Wall clock time and date at job start Mon Mar 30 2020 03:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47457 * 2 1 4 4 H 1.09001 * 109.46831 * 305.00774 * 3 2 1 5 5 C 1.50693 * 109.47308 * 185.00356 * 3 2 1 6 6 H 1.08004 * 119.99966 * 240.00165 * 5 3 2 7 7 C 1.37875 * 119.99957 * 60.00285 * 5 3 2 8 8 N 1.31513 * 120.00089 * 359.97438 * 7 5 3 9 9 Si 1.86811 * 119.99938 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46955 * 90.00075 * 9 7 5 11 11 H 1.48492 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48498 * 109.46871 * 330.00295 * 9 7 5 13 13 N 1.46900 * 109.46524 * 65.00435 * 3 2 1 14 14 C 1.47446 * 110.99816 * 180.02562 * 13 3 2 15 15 C 1.54317 * 107.23409 * 236.74428 * 14 13 3 16 16 H 1.08995 * 110.70802 * 96.27356 * 15 14 13 17 17 C 1.53006 * 110.70332 * 219.33325 * 15 14 13 18 18 C 1.52997 * 109.47127 * 293.54229 * 17 15 14 19 19 C 1.55145 * 103.01756 * 337.71198 * 15 14 13 20 20 H 1.08995 * 110.99392 * 277.56488 * 19 15 14 21 21 O 1.42902 * 110.98658 * 153.74661 * 19 15 14 22 22 C 1.47839 * 111.00211 * 59.16118 * 13 3 2 23 23 H 1.08997 * 109.47182 * 59.99054 * 1 2 3 24 24 H 1.08996 * 109.47351 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46916 * 299.99436 * 1 2 3 26 26 H 1.09002 * 109.46916 * 240.00564 * 2 1 3 27 27 H 1.08994 * 109.47680 * 120.00892 * 2 1 3 28 28 H 0.97008 * 120.00020 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.89086 * 117.33746 * 14 13 3 30 30 H 1.09005 * 109.88810 * 356.14608 * 14 13 3 31 31 H 1.08998 * 109.46505 * 173.54100 * 17 15 14 32 32 H 1.08996 * 109.46884 * 53.54981 * 17 15 14 33 33 H 1.09002 * 109.47153 * 180.02562 * 18 17 15 34 34 H 1.09001 * 109.46832 * 60.00321 * 18 17 15 35 35 H 1.09004 * 109.47261 * 300.00303 * 18 17 15 36 36 H 0.96702 * 113.99472 * 180.02562 * 21 19 15 37 37 H 1.09004 * 110.37126 * 265.19250 * 22 13 3 38 38 H 1.08998 * 110.37602 * 27.41367 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8812 -1.3821 10 1 6.5548 -0.3502 -0.7606 11 1 6.3828 0.9224 -2.8175 12 1 6.5569 2.0737 -0.6903 13 7 1.6515 2.0991 1.2553 14 6 2.1267 3.4945 1.2908 15 6 2.9984 3.6486 2.5548 16 1 4.0541 3.5284 2.3118 17 6 2.7496 5.0030 3.2217 18 6 3.2467 6.1221 2.3045 19 6 2.5052 2.4912 3.4627 20 1 1.6005 2.7750 4.0002 21 8 3.5298 2.0805 4.3702 22 6 2.2076 1.3822 2.4225 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 3.8291 -0.0611 -2.9501 29 1 1.2764 4.1746 1.3416 30 1 2.7213 3.7064 0.4022 31 1 3.2858 5.0450 4.1697 32 1 1.6820 5.1283 3.4022 33 1 3.0699 7.0869 2.7797 34 1 2.7105 6.0799 1.3564 35 1 4.3144 5.9966 2.1239 36 1 3.2681 1.3588 4.9582 37 1 1.4768 0.6767 2.8180 38 1 3.1250 0.8622 2.1467 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400040005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:10 Heat of formation + Delta-G solvation = -63.583111 kcal Electronic energy + Delta-G solvation = -17106.471283 eV Core-core repulsion = 14562.144905 eV Total energy + Delta-G solvation = -2544.326377 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.03179 -35.87462 -34.52083 -32.51375 -31.24622 -28.50903 -27.17218 -26.09459 -23.42636 -22.08246 -21.12128 -19.60467 -18.90545 -16.98448 -16.33238 -15.21397 -14.92300 -14.45727 -13.74318 -13.50709 -13.05117 -12.86293 -12.63909 -12.34619 -12.22067 -11.67396 -11.58959 -11.33143 -11.17893 -11.06133 -10.87574 -10.62781 -10.46779 -10.21150 -10.05593 -9.88052 -9.61500 -9.45657 -9.35356 -9.00226 -8.35804 -7.17547 -5.98592 -4.11222 3.27435 3.34712 3.38562 4.40425 4.49515 5.05745 5.15029 5.25493 5.32916 5.42244 5.55840 5.70402 5.81617 6.02892 6.06153 6.17196 6.25672 6.34012 6.45770 6.48366 6.51698 6.55926 6.66865 6.73016 6.81661 6.92298 7.06356 7.18401 7.31361 7.62453 7.74628 7.93554 8.01776 8.15460 8.28159 8.45138 8.98981 9.55894 11.00697 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.010673 C = 0.008784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.735104 B = 2622.803946 C = 3187.024926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.208 3.792 4 H 0.040 0.960 5 C -0.541 4.541 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.524 5.524 14 C 0.057 3.943 15 C -0.096 4.096 16 H 0.081 0.919 17 C -0.109 4.109 18 C -0.151 4.151 19 C 0.092 3.908 20 H 0.060 0.940 21 O -0.565 6.565 22 C 0.019 3.981 23 H 0.039 0.961 24 H 0.025 0.975 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.372 0.628 37 H 0.059 0.941 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.684 4.618 8.771 10.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.101 3.899 4 H 0.057 0.943 5 C -0.580 4.580 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.249 5.249 14 C -0.071 4.071 15 C -0.116 4.116 16 H 0.099 0.901 17 C -0.147 4.147 18 C -0.208 4.208 19 C 0.033 3.967 20 H 0.078 0.922 21 O -0.369 6.369 22 C -0.109 4.109 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.111 0.889 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.218 0.782 37 H 0.077 0.923 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.889 4.992 8.278 10.089 hybrid contribution 1.657 -0.587 0.008 1.758 sum -1.231 4.406 8.286 9.465 Atomic orbital electron populations 1.21715 0.98867 0.98403 1.00585 1.21606 0.92247 0.99243 1.01977 1.19480 0.93126 0.91189 0.86095 0.94261 1.21778 0.92668 1.38025 1.05482 0.92396 1.24912 0.97762 0.95049 0.95711 1.69876 1.34754 1.38316 1.09438 0.86696 0.86312 0.78485 0.77164 1.20719 1.21220 1.19985 1.63911 1.55954 1.01101 1.03944 1.22679 0.96172 0.91734 0.96565 1.22357 1.01279 0.92780 0.95154 0.90058 1.21479 1.00685 0.94101 0.98470 1.21770 1.01415 0.97587 1.00066 1.23116 0.89136 0.95013 0.89477 0.92201 1.86496 1.41448 1.56701 1.52215 1.23517 0.99663 0.96265 0.91479 0.94134 0.95604 0.93494 0.88920 0.95069 0.92920 0.92431 0.91272 0.92349 0.92245 0.93342 0.92267 0.92866 0.78234 0.92267 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.80 37.16 0.36 -2.46 16 2 C -0.11 -2.66 5.10 -26.73 -0.14 -2.80 16 3 C 0.21 5.09 1.67 -68.87 -0.11 4.98 16 4 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 5 C -0.54 -14.34 6.23 -34.44 -0.21 -14.56 16 6 H 0.06 1.57 6.38 -52.48 -0.33 1.23 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -24.81 11.29 55.43 0.63 -24.19 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.52 -11.07 4.66 -224.66 -1.05 -12.12 16 14 C 0.06 1.10 4.93 -2.84 -0.01 1.09 16 15 C -0.10 -1.69 2.51 -88.79 -0.22 -1.92 16 16 H 0.08 1.63 7.91 -51.93 -0.41 1.21 16 17 C -0.11 -1.57 5.32 -26.73 -0.14 -1.71 16 18 C -0.15 -2.01 9.76 37.16 0.36 -1.64 16 19 C 0.09 1.55 3.87 -24.57 -0.10 1.45 16 20 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 21 O -0.56 -9.10 13.47 -35.23 -0.47 -9.58 16 22 C 0.02 0.38 4.70 -2.28 -0.01 0.37 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.92 7.75 -51.93 -0.40 0.51 16 26 H 0.09 2.46 5.95 -51.93 -0.31 2.15 16 27 H 0.03 0.72 6.85 -51.93 -0.36 0.37 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.06 1.02 7.76 -51.93 -0.40 0.62 16 30 H 0.07 1.50 6.84 -51.93 -0.36 1.14 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.80 7.49 -51.93 -0.39 0.41 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.37 4.25 9.12 45.56 0.42 4.67 16 37 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 38 H 0.07 1.60 6.20 -51.93 -0.32 1.28 16 LS Contribution 293.09 15.07 4.42 4.42 Total: -1.00 -28.28 293.09 -7.61 -35.90 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.80 Total: 4.74 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -0.32 Total: -15.45 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.42 Total: -36.30 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.47 Total: -9.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.28 -7.61 -35.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400040005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.687 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds