Wall clock time and date at job start Mon Mar 30 2020 03:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47457 * 2 1 4 4 H 1.09001 * 109.46831 * 305.00774 * 3 2 1 5 5 C 1.50693 * 109.47308 * 185.00356 * 3 2 1 6 6 H 1.08004 * 119.99966 * 240.00165 * 5 3 2 7 7 C 1.37875 * 119.99957 * 60.00285 * 5 3 2 8 8 N 1.31513 * 120.00089 * 359.97438 * 7 5 3 9 9 Si 1.86811 * 119.99938 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46955 * 90.00075 * 9 7 5 11 11 H 1.48492 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48498 * 109.46871 * 330.00295 * 9 7 5 13 13 N 1.46900 * 109.46524 * 65.00435 * 3 2 1 14 14 C 1.47446 * 110.99816 * 180.02562 * 13 3 2 15 15 C 1.54317 * 107.23409 * 236.74428 * 14 13 3 16 16 H 1.08995 * 110.70802 * 96.27356 * 15 14 13 17 17 C 1.53006 * 110.70332 * 219.33325 * 15 14 13 18 18 C 1.52997 * 109.47127 * 293.54229 * 17 15 14 19 19 C 1.55145 * 103.01756 * 337.71198 * 15 14 13 20 20 H 1.08995 * 110.99392 * 277.56488 * 19 15 14 21 21 O 1.42902 * 110.98658 * 153.74661 * 19 15 14 22 22 C 1.47839 * 111.00211 * 59.16118 * 13 3 2 23 23 H 1.08997 * 109.47182 * 59.99054 * 1 2 3 24 24 H 1.08996 * 109.47351 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46916 * 299.99436 * 1 2 3 26 26 H 1.09002 * 109.46916 * 240.00564 * 2 1 3 27 27 H 1.08994 * 109.47680 * 120.00892 * 2 1 3 28 28 H 0.97008 * 120.00020 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.89086 * 117.33746 * 14 13 3 30 30 H 1.09005 * 109.88810 * 356.14608 * 14 13 3 31 31 H 1.08998 * 109.46505 * 173.54100 * 17 15 14 32 32 H 1.08996 * 109.46884 * 53.54981 * 17 15 14 33 33 H 1.09002 * 109.47153 * 180.02562 * 18 17 15 34 34 H 1.09001 * 109.46832 * 60.00321 * 18 17 15 35 35 H 1.09004 * 109.47261 * 300.00303 * 18 17 15 36 36 H 0.96702 * 113.99472 * 180.02562 * 21 19 15 37 37 H 1.09004 * 110.37126 * 265.19250 * 22 13 3 38 38 H 1.08998 * 110.37602 * 27.41367 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8812 -1.3821 10 1 6.5548 -0.3502 -0.7606 11 1 6.3828 0.9224 -2.8175 12 1 6.5569 2.0737 -0.6903 13 7 1.6515 2.0991 1.2553 14 6 2.1267 3.4945 1.2908 15 6 2.9984 3.6486 2.5548 16 1 4.0541 3.5284 2.3118 17 6 2.7496 5.0030 3.2217 18 6 3.2467 6.1221 2.3045 19 6 2.5052 2.4912 3.4627 20 1 1.6005 2.7750 4.0002 21 8 3.5298 2.0805 4.3702 22 6 2.2076 1.3822 2.4225 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 3.8291 -0.0611 -2.9501 29 1 1.2764 4.1746 1.3416 30 1 2.7213 3.7064 0.4022 31 1 3.2858 5.0450 4.1697 32 1 1.6820 5.1283 3.4022 33 1 3.0699 7.0869 2.7797 34 1 2.7105 6.0799 1.3564 35 1 4.3144 5.9966 2.1239 36 1 3.2681 1.3588 4.9582 37 1 1.4768 0.6767 2.8180 38 1 3.1250 0.8622 2.1467 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400040005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:10 Heat of formation + Delta-G solvation = -83.558497 kcal Electronic energy + Delta-G solvation = -17107.337480 eV Core-core repulsion = 14562.144905 eV Total energy + Delta-G solvation = -2545.192575 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57676 -37.42754 -35.94267 -34.29754 -33.00417 -30.08344 -28.64366 -27.96082 -25.14955 -23.55956 -22.67123 -21.07189 -20.69136 -18.52143 -18.16961 -16.98083 -16.41582 -16.06932 -15.39695 -14.89533 -14.77545 -14.40326 -14.21820 -13.93256 -13.58736 -13.26064 -13.09946 -13.02181 -12.80680 -12.72829 -12.54980 -12.44476 -12.08841 -11.76713 -11.65068 -11.48704 -11.34430 -11.15523 -10.88359 -10.74103 -10.44567 -8.98116 -8.05220 -6.25987 1.33034 1.35552 1.44083 2.37623 3.12784 3.15953 3.69275 3.80288 3.81708 4.07096 4.35124 4.45409 4.55350 4.60388 4.64765 4.72255 4.77107 4.89273 4.95572 4.99832 5.11140 5.15247 5.18554 5.21786 5.29742 5.40143 5.42965 5.46754 5.54202 5.61392 5.78176 6.02487 6.17516 6.38564 6.55433 6.92430 6.95964 7.43560 8.90019 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.010673 C = 0.008784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.735104 B = 2622.803946 C = 3187.024926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.004 0.996 5 C -0.544 4.544 6 H 0.046 0.954 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.941 3.059 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.276 1.276 13 N -0.523 5.523 14 C 0.058 3.942 15 C -0.095 4.095 16 H 0.048 0.952 17 C -0.101 4.101 18 C -0.151 4.151 19 C 0.105 3.895 20 H 0.090 0.910 21 O -0.576 6.576 22 C 0.020 3.980 23 H 0.033 0.967 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.393 0.607 37 H 0.076 0.924 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 5.230 10.611 12.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.146 4.146 3 C 0.108 3.892 4 H 0.022 0.978 5 C -0.583 4.583 6 H 0.064 0.936 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.767 3.233 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.201 1.201 13 N -0.247 5.247 14 C -0.070 4.070 15 C -0.114 4.114 16 H 0.067 0.933 17 C -0.139 4.139 18 C -0.208 4.208 19 C 0.046 3.954 20 H 0.107 0.893 21 O -0.383 6.383 22 C -0.109 4.109 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.243 0.757 37 H 0.094 0.906 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.471 5.597 10.140 12.091 hybrid contribution 1.839 -0.777 -0.537 2.067 sum -1.632 4.820 9.602 10.867 Atomic orbital electron populations 1.21577 0.96090 0.99888 1.00794 1.21446 0.94677 0.98105 1.00336 1.19224 0.91713 0.91590 0.86700 0.97790 1.21952 0.93923 1.37374 1.05037 0.93562 1.25562 1.01436 0.95101 0.95669 1.69991 1.36063 1.39029 1.09800 0.85828 0.81971 0.78282 0.77209 1.20347 1.20639 1.20127 1.63872 1.55867 1.01839 1.03090 1.22687 0.96839 0.91120 0.96353 1.22299 0.98826 0.95496 0.94819 0.93328 1.21432 1.01975 0.92041 0.98437 1.21770 1.00571 0.98634 0.99835 1.22994 0.90187 0.93167 0.89055 0.89266 1.86457 1.41647 1.57840 1.52368 1.23543 0.98390 0.97245 0.91730 0.94806 0.93476 0.92293 0.91998 0.95145 0.92933 0.90265 0.94569 0.91516 0.90424 0.90808 0.93045 0.93957 0.75720 0.90612 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 9.80 71.98 0.71 -4.31 16 2 C -0.11 -5.12 5.10 30.59 0.16 -4.97 16 3 C 0.22 10.81 1.67 44.17 0.07 10.89 16 4 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 5 C -0.54 -29.74 6.23 25.60 0.16 -29.58 16 6 H 0.05 2.59 6.38 -2.91 -0.02 2.57 16 7 C 0.02 1.23 5.29 84.65 0.45 1.68 16 8 N -0.91 -52.29 11.29 21.45 0.24 -52.04 16 9 Si 0.94 44.55 29.54 68.60 2.03 46.57 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 N -0.52 -21.89 4.66 -864.69 -4.03 -25.92 16 14 C 0.06 2.24 4.93 86.65 0.43 2.67 16 15 C -0.09 -3.23 2.51 -9.61 -0.02 -3.26 16 16 H 0.05 1.96 7.91 -2.39 -0.02 1.95 16 17 C -0.10 -2.63 5.32 30.60 0.16 -2.47 16 18 C -0.15 -3.73 9.76 71.98 0.70 -3.03 16 19 C 0.11 3.30 3.87 31.99 0.12 3.43 16 20 H 0.09 2.36 8.05 -2.39 -0.02 2.34 16 21 O -0.58 -17.22 13.47 -148.98 -2.01 -19.23 16 22 C 0.02 0.74 4.70 86.79 0.41 1.15 16 23 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.06 2.19 7.75 -2.39 -0.02 2.17 16 26 H 0.06 3.36 5.95 -2.39 -0.01 3.34 16 27 H 0.03 1.42 6.85 -2.39 -0.02 1.40 16 28 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 29 H 0.08 2.70 7.76 -2.38 -0.02 2.68 16 30 H 0.04 1.62 6.84 -2.38 -0.02 1.60 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.78 8.06 -2.39 -0.02 1.76 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.34 7.49 -2.39 -0.02 1.32 16 35 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.39 7.85 9.12 -74.06 -0.68 7.18 16 37 H 0.08 2.60 8.10 -2.39 -0.02 2.58 16 38 H 0.04 1.63 6.20 -2.39 -0.01 1.61 16 Total: -1.00 -61.72 293.09 -0.08 -61.79 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.35 Total: 16.63 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 3.34 Total: -27.80 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -3.79 Total: -77.97 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -2.01 Total: -19.23 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -61.72 -0.08 -61.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400040005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.765 kcal (2) G-P(sol) polarization free energy of solvation -61.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds