Wall clock time and date at job start Mon Mar 30 2020 03:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47364 * 2 1 4 4 H 1.08997 * 109.46987 * 179.20353 * 3 2 1 5 5 C 1.50699 * 109.47099 * 59.20109 * 3 2 1 6 6 H 1.07999 * 120.00520 * 240.00107 * 5 3 2 7 7 C 1.37881 * 119.99810 * 59.99862 * 5 3 2 8 8 N 1.31514 * 119.99980 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99838 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47295 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46884 * 120.00626 * 9 7 5 12 12 H 1.48500 * 109.46914 * 239.99998 * 9 7 5 13 13 N 1.46899 * 109.46911 * 299.20417 * 3 2 1 14 14 C 1.47902 * 111.00250 * 300.02478 * 13 3 2 15 15 C 1.53992 * 107.05885 * 214.16281 * 14 13 3 16 16 H 1.09004 * 110.30382 * 242.30508 * 15 14 13 17 17 O 1.42896 * 110.30958 * 120.14193 * 15 14 13 18 18 C 1.54595 * 105.14399 * 1.22182 * 15 14 13 19 19 H 1.09001 * 110.72555 * 263.60537 * 18 15 14 20 20 C 1.52995 * 110.72220 * 140.49471 * 18 15 14 21 21 C 1.53003 * 109.46908 * 175.00396 * 20 18 15 22 22 C 1.48540 * 110.99784 * 182.63131 * 13 3 2 23 23 H 1.08991 * 109.47210 * 184.53850 * 1 2 3 24 24 H 1.09002 * 109.46784 * 304.54000 * 1 2 3 25 25 H 1.08998 * 109.46962 * 64.53372 * 1 2 3 26 26 H 1.09004 * 109.46465 * 239.99910 * 2 1 3 27 27 H 1.08998 * 109.46879 * 120.00510 * 2 1 3 28 28 H 0.97002 * 119.99780 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.91623 * 94.80635 * 14 13 3 30 30 H 1.09004 * 109.91604 * 333.51447 * 14 13 3 31 31 H 0.96705 * 113.99891 * 64.28514 * 17 15 14 32 32 H 1.08995 * 109.47469 * 295.00154 * 20 18 15 33 33 H 1.08996 * 109.47293 * 55.00510 * 20 18 15 34 34 H 1.09000 * 109.47521 * 60.00049 * 21 20 18 35 35 H 1.08997 * 109.47368 * 180.02562 * 21 20 18 36 36 H 1.09006 * 109.47295 * 300.00295 * 21 20 18 37 37 H 1.09005 * 110.66499 * 41.28420 * 22 13 3 38 38 H 1.09000 * 110.81387 * 278.22436 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4424 0.0143 5 6 1.5217 2.1586 1.2204 6 1 0.9022 3.0362 1.1092 7 6 1.8383 1.6933 2.4792 8 7 2.5930 0.6248 2.6147 9 14 1.1963 2.5814 3.9920 10 1 0.3767 3.7461 3.5717 11 1 0.3605 1.6521 4.7939 12 1 2.3409 3.0514 4.8130 13 7 1.5662 2.1293 -1.2089 14 6 2.0560 1.4526 -2.4295 15 6 2.3049 2.5471 -3.4838 16 1 1.6551 2.3966 -4.3459 17 8 3.6755 2.5439 -3.8880 18 6 1.9574 3.8766 -2.7756 19 1 0.9369 4.1818 -3.0071 20 6 2.9501 4.9734 -3.1658 21 6 2.5093 6.3029 -2.5499 22 6 2.0947 3.5160 -1.2750 23 1 -0.3633 -1.0244 0.0813 24 1 -0.3633 0.5827 0.8465 25 1 -0.3633 0.4419 -0.9278 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.8154 0.2973 3.5002 29 1 1.3044 0.7516 -2.7923 30 1 2.9857 0.9260 -2.2144 31 1 3.9509 1.7337 -4.3384 32 1 3.9423 4.7135 -2.7970 33 1 2.9791 5.0678 -4.2513 34 1 2.4802 6.2086 -1.4644 35 1 3.2162 7.0844 -2.8283 36 1 1.5170 6.5629 -2.9187 37 1 3.1399 3.5444 -0.9666 38 1 1.4955 4.1885 -0.6613 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400040007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:12 Heat of formation + Delta-G solvation = -60.149599 kcal Electronic energy + Delta-G solvation = -16998.415404 eV Core-core repulsion = 14454.237915 eV Total energy + Delta-G solvation = -2544.177489 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.08615 -35.90623 -34.39619 -32.70453 -30.97646 -28.61631 -27.37093 -25.79237 -23.69316 -22.20591 -21.16546 -19.56604 -18.74214 -17.07742 -15.99370 -15.57003 -14.52543 -14.36483 -14.06621 -13.74061 -13.12464 -12.97818 -12.73317 -12.46214 -12.07184 -11.66238 -11.58708 -11.44539 -11.03640 -10.94417 -10.78375 -10.54000 -10.41631 -10.24550 -10.06312 -9.89191 -9.66684 -9.47908 -9.32691 -8.79599 -8.39860 -7.23260 -5.98622 -4.01570 3.30549 3.38714 3.43014 4.41318 4.48148 4.93652 5.13007 5.19082 5.30046 5.37385 5.50912 5.60298 5.84651 5.93521 5.97966 6.21353 6.26842 6.30759 6.38892 6.47531 6.53511 6.55788 6.60484 6.74181 6.80707 6.82031 7.12888 7.26272 7.42812 7.63174 7.72834 7.85257 7.89196 8.12584 8.35167 8.58066 9.03874 9.62167 11.08237 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027012 B = 0.008951 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.340770 B = 3127.303650 C = 3773.683090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.209 3.791 4 H -0.001 1.001 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.506 5.506 14 C 0.007 3.993 15 C 0.094 3.906 16 H 0.055 0.945 17 O -0.563 6.563 18 C -0.088 4.088 19 H 0.083 0.917 20 C -0.100 4.100 21 C -0.153 4.153 22 C 0.061 3.939 23 H 0.015 0.985 24 H 0.060 0.940 25 H 0.038 0.962 26 H 0.011 0.989 27 H 0.090 0.910 28 H 0.259 0.741 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.371 0.629 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.039 0.961 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.433 3.894 -10.605 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.102 3.898 4 H 0.016 0.984 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.231 5.231 14 C -0.122 4.122 15 C 0.035 3.965 16 H 0.073 0.927 17 O -0.367 6.367 18 C -0.107 4.107 19 H 0.102 0.898 20 C -0.138 4.138 21 C -0.211 4.211 22 C -0.067 4.067 23 H 0.034 0.966 24 H 0.079 0.921 25 H 0.057 0.943 26 H 0.029 0.971 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.217 0.783 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.941 4.359 -10.138 11.075 hybrid contribution 0.570 -0.354 0.670 0.948 sum -0.371 4.005 -9.468 10.287 Atomic orbital electron populations 1.21469 0.97261 0.97578 1.01456 1.21536 0.95264 0.98146 0.99871 1.19464 0.92944 0.91111 0.86239 0.98384 1.21060 1.30793 1.11767 0.89560 0.92058 1.24908 0.95278 0.95126 0.98895 1.69893 1.37431 1.23142 1.22798 0.86522 0.78611 0.79760 0.83038 1.19740 1.21087 1.21213 1.64884 1.55049 1.01295 1.01862 1.23527 0.99014 0.96701 0.92959 1.22742 0.82050 0.96234 0.95497 0.92716 1.86539 1.27379 1.43075 1.79733 1.22271 0.99149 0.92928 0.96391 0.89825 1.21209 0.99246 0.93477 0.99836 1.21826 1.00578 0.97094 1.01576 1.23010 0.98460 0.92078 0.93150 0.96615 0.92072 0.94252 0.97075 0.89132 0.93114 0.91313 0.93737 0.78276 0.91503 0.92585 0.92311 0.93341 0.93149 0.94238 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.53 37.16 0.35 -2.34 16 2 C -0.11 -2.65 5.26 -26.73 -0.14 -2.79 16 3 C 0.21 5.25 1.43 -68.87 -0.10 5.15 16 4 H 0.00 -0.04 8.00 -51.93 -0.42 -0.46 16 5 C -0.49 -13.34 6.75 -34.44 -0.23 -13.57 16 6 H 0.06 1.68 7.12 -52.49 -0.37 1.30 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.42 11.33 55.43 0.63 -24.79 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.51 -10.87 4.46 -223.88 -1.00 -11.86 16 14 C 0.01 0.13 5.21 -2.75 -0.01 0.11 16 15 C 0.09 1.45 4.23 -25.38 -0.11 1.34 16 16 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 17 O -0.56 -8.24 11.80 -35.23 -0.42 -8.66 16 18 C -0.09 -1.42 3.01 -88.76 -0.27 -1.69 16 19 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 20 C -0.10 -1.44 4.59 -26.73 -0.12 -1.57 16 21 C -0.15 -1.98 9.80 37.16 0.36 -1.62 16 22 C 0.06 1.21 4.68 -1.89 -0.01 1.20 16 23 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 1.48 7.03 -51.93 -0.37 1.12 16 25 H 0.04 0.83 7.77 -51.93 -0.40 0.43 16 26 H 0.01 0.24 7.03 -51.93 -0.36 -0.13 16 27 H 0.09 2.44 6.09 -51.93 -0.32 2.12 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.04 0.86 7.34 -51.93 -0.38 0.48 16 31 H 0.37 3.88 9.12 45.56 0.42 4.29 16 32 H 0.07 1.07 7.62 -51.93 -0.40 0.68 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.81 7.67 -51.93 -0.40 0.42 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.04 0.86 7.78 -51.93 -0.40 0.45 16 38 H 0.08 1.56 7.52 -51.93 -0.39 1.17 16 LS Contribution 293.64 15.07 4.43 4.43 Total: -1.00 -28.96 293.64 -7.64 -36.59 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.89 Total: 2.18 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.37 Total: -14.24 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.37 Total: -36.65 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.42 Total: -8.66 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.96 -7.64 -36.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400040007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.556 kcal (2) G-P(sol) polarization free energy of solvation -28.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds