Wall clock time and date at job start Mon Mar 30 2020 03:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47364 * 2 1 4 4 H 1.08997 * 109.46987 * 179.20353 * 3 2 1 5 5 C 1.50699 * 109.47099 * 59.20109 * 3 2 1 6 6 H 1.07999 * 120.00520 * 240.00107 * 5 3 2 7 7 C 1.37881 * 119.99810 * 59.99862 * 5 3 2 8 8 N 1.31514 * 119.99980 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99838 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47295 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46884 * 120.00626 * 9 7 5 12 12 H 1.48500 * 109.46914 * 239.99998 * 9 7 5 13 13 N 1.46899 * 109.46911 * 299.20417 * 3 2 1 14 14 C 1.47902 * 111.00250 * 300.02478 * 13 3 2 15 15 C 1.53992 * 107.05885 * 214.16281 * 14 13 3 16 16 H 1.09004 * 110.30382 * 242.30508 * 15 14 13 17 17 O 1.42896 * 110.30958 * 120.14193 * 15 14 13 18 18 C 1.54595 * 105.14399 * 1.22182 * 15 14 13 19 19 H 1.09001 * 110.72555 * 263.60537 * 18 15 14 20 20 C 1.52995 * 110.72220 * 140.49471 * 18 15 14 21 21 C 1.53003 * 109.46908 * 175.00396 * 20 18 15 22 22 C 1.48540 * 110.99784 * 182.63131 * 13 3 2 23 23 H 1.08991 * 109.47210 * 184.53850 * 1 2 3 24 24 H 1.09002 * 109.46784 * 304.54000 * 1 2 3 25 25 H 1.08998 * 109.46962 * 64.53372 * 1 2 3 26 26 H 1.09004 * 109.46465 * 239.99910 * 2 1 3 27 27 H 1.08998 * 109.46879 * 120.00510 * 2 1 3 28 28 H 0.97002 * 119.99780 * 180.02562 * 8 7 5 29 29 H 1.08993 * 109.91623 * 94.80635 * 14 13 3 30 30 H 1.09004 * 109.91604 * 333.51447 * 14 13 3 31 31 H 0.96705 * 113.99891 * 64.28514 * 17 15 14 32 32 H 1.08995 * 109.47469 * 295.00154 * 20 18 15 33 33 H 1.08996 * 109.47293 * 55.00510 * 20 18 15 34 34 H 1.09000 * 109.47521 * 60.00049 * 21 20 18 35 35 H 1.08997 * 109.47368 * 180.02562 * 21 20 18 36 36 H 1.09006 * 109.47295 * 300.00295 * 21 20 18 37 37 H 1.09005 * 110.66499 * 41.28420 * 22 13 3 38 38 H 1.09000 * 110.81387 * 278.22436 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4424 0.0143 5 6 1.5217 2.1586 1.2204 6 1 0.9022 3.0362 1.1092 7 6 1.8383 1.6933 2.4792 8 7 2.5930 0.6248 2.6147 9 14 1.1963 2.5814 3.9920 10 1 0.3767 3.7461 3.5717 11 1 0.3605 1.6521 4.7939 12 1 2.3409 3.0514 4.8130 13 7 1.5662 2.1293 -1.2089 14 6 2.0560 1.4526 -2.4295 15 6 2.3049 2.5471 -3.4838 16 1 1.6551 2.3966 -4.3459 17 8 3.6755 2.5439 -3.8880 18 6 1.9574 3.8766 -2.7756 19 1 0.9369 4.1818 -3.0071 20 6 2.9501 4.9734 -3.1658 21 6 2.5093 6.3029 -2.5499 22 6 2.0947 3.5160 -1.2750 23 1 -0.3633 -1.0244 0.0813 24 1 -0.3633 0.5827 0.8465 25 1 -0.3633 0.4419 -0.9278 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.8154 0.2973 3.5002 29 1 1.3044 0.7516 -2.7923 30 1 2.9857 0.9260 -2.2144 31 1 3.9509 1.7337 -4.3384 32 1 3.9423 4.7135 -2.7970 33 1 2.9791 5.0678 -4.2513 34 1 2.4802 6.2086 -1.4644 35 1 3.2162 7.0844 -2.8283 36 1 1.5170 6.5629 -2.9187 37 1 3.1399 3.5444 -0.9666 38 1 1.4955 4.1885 -0.6613 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400040007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:11 Heat of formation + Delta-G solvation = -80.390318 kcal Electronic energy + Delta-G solvation = -16999.293108 eV Core-core repulsion = 14454.237915 eV Total energy + Delta-G solvation = -2545.055192 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54675 -37.49381 -35.76333 -34.40838 -32.83007 -30.18356 -28.80056 -27.67093 -25.47845 -23.68299 -22.67155 -21.06865 -20.41322 -18.49659 -17.85274 -17.25792 -16.32432 -15.78124 -15.47729 -15.32640 -14.73682 -14.49629 -14.39799 -13.96297 -13.69539 -13.16303 -13.02922 -12.93507 -12.84972 -12.58905 -12.42883 -12.36193 -12.04660 -11.74821 -11.59074 -11.54025 -11.21771 -11.10604 -10.83418 -10.78101 -10.49719 -9.02958 -8.09979 -6.19733 1.38878 1.41144 1.52416 2.41813 3.17460 3.25712 3.55112 3.73381 3.87369 4.04922 4.32213 4.43644 4.56677 4.57699 4.63497 4.70641 4.72599 4.86376 4.87302 5.01024 5.01934 5.14244 5.17941 5.23845 5.25200 5.39337 5.44014 5.45141 5.58248 5.71860 5.74246 5.84350 6.25251 6.35468 6.65223 6.91989 6.93060 7.47851 8.96183 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027012 B = 0.008951 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.340770 B = 3127.303650 C = 3773.683090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C 0.217 3.783 4 H -0.049 1.049 5 C -0.502 4.502 6 H 0.054 0.946 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.953 3.047 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.284 1.284 13 N -0.511 5.511 14 C 0.004 3.996 15 C 0.104 3.896 16 H 0.090 0.910 17 O -0.574 6.574 18 C -0.082 4.082 19 H 0.100 0.900 20 C -0.093 4.093 21 C -0.151 4.151 22 C 0.062 3.938 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.052 0.948 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.260 0.740 29 H 0.084 0.916 30 H 0.027 0.973 31 H 0.390 0.610 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.009 0.991 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 4.584 -12.210 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.144 4.144 3 C 0.110 3.890 4 H -0.032 1.032 5 C -0.540 4.540 6 H 0.072 0.928 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.210 1.210 13 N -0.235 5.235 14 C -0.125 4.125 15 C 0.044 3.956 16 H 0.108 0.892 17 O -0.381 6.381 18 C -0.101 4.101 19 H 0.119 0.881 20 C -0.131 4.131 21 C -0.208 4.208 22 C -0.066 4.066 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.045 0.955 31 H 0.240 0.760 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.027 0.973 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.123 5.044 -11.766 12.976 hybrid contribution 0.994 -0.588 1.129 1.615 sum -1.129 4.456 -10.637 11.587 Atomic orbital electron populations 1.21323 0.95477 0.98646 1.01049 1.21405 0.96700 0.97186 0.99081 1.19214 0.90005 0.92157 0.87649 1.03162 1.21247 1.30515 1.11596 0.90681 0.92815 1.25645 0.95518 0.95818 1.01630 1.70027 1.38392 1.24319 1.23347 0.85576 0.78078 0.78836 0.79620 1.19122 1.20522 1.20995 1.64796 1.54977 1.02008 1.01767 1.23656 0.98533 0.97809 0.92458 1.22668 0.83099 0.94226 0.95557 0.89209 1.86507 1.27080 1.44550 1.79979 1.22281 1.00628 0.94112 0.93104 0.88141 1.21143 0.97550 0.93540 1.00840 1.21808 1.01896 0.96787 1.00353 1.22958 0.96142 0.91256 0.96262 0.94441 0.94417 0.92888 0.95529 0.92206 0.93109 0.89811 0.95494 0.76048 0.93709 0.90761 0.94081 0.91801 0.91636 0.97291 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.71 9.53 71.98 0.69 -4.03 16 2 C -0.11 -5.14 5.26 30.60 0.16 -4.98 16 3 C 0.22 11.26 1.43 44.17 0.06 11.32 16 4 H -0.05 -2.94 8.00 -2.39 -0.02 -2.96 16 5 C -0.50 -27.85 6.75 25.60 0.17 -27.67 16 6 H 0.05 3.00 7.12 -2.91 -0.02 2.98 16 7 C 0.01 0.68 5.30 84.66 0.45 1.13 16 8 N -0.92 -53.83 11.33 21.45 0.24 -53.59 16 9 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 N -0.51 -21.99 4.46 -862.23 -3.84 -25.83 16 14 C 0.00 0.15 5.21 86.45 0.45 0.60 16 15 C 0.10 2.92 4.23 31.47 0.13 3.05 16 16 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 17 O -0.57 -15.57 11.80 -148.98 -1.76 -17.33 16 18 C -0.08 -2.49 3.01 -9.59 -0.03 -2.52 16 19 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 20 C -0.09 -2.51 4.59 30.59 0.14 -2.37 16 21 C -0.15 -3.63 9.80 71.98 0.71 -2.93 16 22 C 0.06 2.49 4.68 86.65 0.41 2.90 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 1.80 7.03 -2.39 -0.02 1.78 16 25 H 0.05 2.14 7.77 -2.39 -0.02 2.12 16 26 H 0.03 1.18 7.03 -2.38 -0.02 1.16 16 27 H 0.06 3.30 6.09 -2.39 -0.01 3.29 16 28 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.03 1.04 7.34 -2.39 -0.02 1.02 16 31 H 0.39 7.20 9.12 -74.05 -0.68 6.52 16 32 H 0.04 1.41 7.62 -2.39 -0.02 1.39 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.04 1.12 7.67 -2.39 -0.02 1.10 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.01 0.40 7.78 -2.38 -0.02 0.38 16 38 H 0.06 2.69 7.52 -2.39 -0.02 2.68 16 Total: -1.00 -63.56 293.64 0.35 -63.21 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.34 Total: 12.61 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 3.34 Total: -25.49 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -3.60 Total: -79.43 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -1.76 Total: -17.33 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -63.56 0.35 -63.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400040007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.181 kcal (2) G-P(sol) polarization free energy of solvation -63.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds