Wall clock time and date at job start Mon Mar 30 2020 03:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47431 * 2 1 4 4 H 1.08996 * 109.46843 * 55.00099 * 3 2 1 5 5 C 1.50696 * 109.47443 * 175.00136 * 3 2 1 6 6 H 1.07993 * 120.00247 * 120.00062 * 5 3 2 7 7 C 1.37884 * 119.99916 * 300.00457 * 5 3 2 8 8 N 1.31516 * 120.00038 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99852 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47446 * 59.99894 * 9 7 5 11 11 H 1.48505 * 109.47059 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47439 * 299.99629 * 9 7 5 13 13 N 1.46899 * 109.47146 * 295.00202 * 3 2 1 14 14 C 1.48721 * 111.01657 * 179.61265 * 13 3 2 15 15 C 1.54376 * 104.52014 * 158.96479 * 14 13 3 16 16 H 1.09001 * 110.32102 * 95.21346 * 15 14 13 17 17 C 1.52992 * 110.32720 * 217.32143 * 15 14 13 18 18 C 1.52997 * 109.47482 * 292.17438 * 17 15 14 19 19 C 1.54264 * 105.14928 * 336.27524 * 15 14 13 20 20 H 1.08995 * 110.32218 * 241.05025 * 19 15 14 21 21 O 1.42899 * 110.32584 * 118.94307 * 19 15 14 22 22 C 1.48558 * 111.00172 * 295.12445 * 13 3 2 23 23 H 1.09004 * 109.46447 * 299.99772 * 1 2 3 24 24 H 1.09002 * 109.46666 * 59.99458 * 1 2 3 25 25 H 1.08993 * 109.47089 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47164 * 240.00430 * 2 1 3 27 27 H 1.08997 * 109.47530 * 120.00464 * 2 1 3 28 28 H 0.96997 * 119.99812 * 180.02562 * 8 7 5 29 29 H 1.09005 * 110.38458 * 40.24250 * 14 13 3 30 30 H 1.09003 * 110.50842 * 277.75328 * 14 13 3 31 31 H 1.09002 * 109.47103 * 172.17191 * 17 15 14 32 32 H 1.08998 * 109.46862 * 52.18003 * 17 15 14 33 33 H 1.09002 * 109.47153 * 59.99783 * 18 17 15 34 34 H 1.09001 * 109.46832 * 299.99974 * 18 17 15 35 35 H 1.09004 * 109.47261 * 179.97438 * 18 17 15 36 36 H 0.96700 * 113.99634 * 179.97438 * 21 19 15 37 37 H 1.09004 * 110.41182 * 82.18097 * 22 13 3 38 38 H 1.09007 * 110.50785 * 319.78799 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1434 0.8782 1.2279 8 7 3.4063 0.3372 2.1733 9 14 6.0050 0.8799 1.3810 10 1 6.5006 2.2797 1.3807 11 1 6.3979 0.2165 2.6502 12 1 6.5967 0.1451 0.2341 13 7 1.6515 2.0993 -1.2552 14 6 2.1231 3.5094 -1.2876 15 6 2.1405 3.8773 -2.7867 16 1 1.2122 4.3763 -3.0649 17 6 3.3396 4.7745 -3.0999 18 6 3.1491 6.1344 -2.4251 19 6 2.2691 2.5320 -3.5306 20 1 3.1865 2.5108 -4.1187 21 8 1.1350 2.3206 -4.3738 22 6 2.3202 1.4622 -2.4187 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8294 -0.0606 2.9502 29 1 3.1256 3.5842 -0.8661 30 1 1.4326 4.1555 -0.7455 31 1 3.4187 4.9119 -4.1783 32 1 4.2504 4.3074 -2.7254 33 1 3.0699 5.9969 -1.3467 34 1 2.2382 6.6014 -2.7997 35 1 4.0036 6.7734 -2.6478 36 1 1.1613 1.4895 -4.8673 37 1 1.7779 0.5681 -2.7263 38 1 3.3538 1.2145 -2.1767 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400040009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:13 Heat of formation + Delta-G solvation = -61.885495 kcal Electronic energy + Delta-G solvation = -17071.151573 eV Core-core repulsion = 14526.898810 eV Total energy + Delta-G solvation = -2544.252763 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.01239 -35.79654 -34.56888 -32.46533 -31.23434 -28.56046 -27.17427 -26.07597 -23.48528 -22.12224 -21.19229 -19.61739 -18.75406 -16.65141 -16.48422 -15.47226 -14.86871 -14.34384 -14.10357 -13.33704 -12.97757 -12.84123 -12.74684 -12.27561 -12.23250 -11.63255 -11.49369 -11.29993 -11.22261 -10.99673 -10.82056 -10.65976 -10.54850 -10.19713 -9.99830 -9.93051 -9.65773 -9.45514 -9.36589 -9.07413 -8.37367 -7.19217 -6.00933 -4.14323 3.24873 3.30774 3.32535 4.36503 4.56848 5.03143 5.13171 5.23083 5.31537 5.42807 5.59016 5.70780 5.79913 5.98329 6.05389 6.18408 6.27603 6.35793 6.43900 6.48284 6.49561 6.57570 6.66970 6.70908 6.73333 6.90164 7.08302 7.19930 7.30130 7.57764 7.72351 7.96210 8.03128 8.13461 8.23954 8.42437 8.95771 9.52326 10.98420 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.010527 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.185464 B = 2659.125873 C = 3422.326714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C 0.201 3.799 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.503 5.503 14 C 0.043 3.957 15 C -0.085 4.085 16 H 0.080 0.920 17 C -0.115 4.115 18 C -0.149 4.149 19 C 0.100 3.900 20 H 0.051 0.949 21 O -0.563 6.563 22 C 0.009 3.991 23 H 0.039 0.961 24 H 0.048 0.952 25 H 0.025 0.975 26 H 0.029 0.971 27 H 0.091 0.909 28 H 0.262 0.738 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.370 0.630 37 H 0.067 0.933 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 4.435 -8.776 9.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.094 3.906 4 H 0.057 0.943 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.227 5.227 14 C -0.086 4.086 15 C -0.105 4.105 16 H 0.099 0.901 17 C -0.152 4.152 18 C -0.207 4.207 19 C 0.040 3.960 20 H 0.069 0.931 21 O -0.368 6.368 22 C -0.120 4.120 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.216 0.784 37 H 0.085 0.915 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.510 4.875 -8.341 9.778 hybrid contribution 2.192 -0.641 0.099 2.286 sum 0.682 4.234 -8.241 9.291 Atomic orbital electron populations 1.21717 0.98826 0.98396 1.00696 1.21549 0.92288 0.99072 1.01788 1.19401 0.93100 0.91401 0.86650 0.94319 1.21660 0.92792 1.38355 1.05533 0.92451 1.24910 0.97756 0.95010 0.95678 1.69867 1.34881 1.38047 1.09355 0.86759 0.86227 0.78241 0.77392 1.20321 1.21213 1.20356 1.65755 1.51945 1.00939 1.04030 1.23064 1.00204 0.92007 0.93297 1.21938 0.98646 0.93961 0.95908 0.90146 1.21581 0.98091 0.95712 0.99866 1.21750 1.00959 0.96531 1.01445 1.22725 0.87010 0.95803 0.90419 0.93149 1.86511 1.45295 1.43759 1.61252 1.23669 0.99637 0.96594 0.92100 0.94202 0.93285 0.95631 0.95207 0.89034 0.92806 0.92132 0.91781 0.92488 0.91835 0.92148 0.92970 0.93204 0.78415 0.91456 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.80 37.16 0.36 -2.56 16 2 C -0.11 -2.60 5.18 -26.73 -0.14 -2.74 16 3 C 0.20 4.97 1.83 -68.87 -0.13 4.85 16 4 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 5 C -0.54 -14.24 6.51 -34.44 -0.22 -14.47 16 6 H 0.06 1.49 5.69 -52.49 -0.30 1.19 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.63 11.29 55.43 0.63 -24.00 16 9 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.50 -10.86 4.85 -223.27 -1.08 -11.94 16 14 C 0.04 0.84 5.04 -2.09 -0.01 0.83 16 15 C -0.09 -1.43 2.88 -89.24 -0.26 -1.69 16 16 H 0.08 1.38 7.98 -51.93 -0.41 0.97 16 17 C -0.11 -1.63 5.11 -26.74 -0.14 -1.77 16 18 C -0.15 -1.92 9.77 37.16 0.36 -1.55 16 19 C 0.10 1.66 4.07 -25.35 -0.10 1.56 16 20 H 0.05 0.76 7.71 -51.93 -0.40 0.36 16 21 O -0.56 -9.00 13.27 -35.23 -0.47 -9.47 16 22 C 0.01 0.17 5.06 -2.18 -0.01 0.16 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.05 1.01 7.75 -51.93 -0.40 0.61 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.03 0.70 6.84 -51.93 -0.36 0.34 16 27 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.06 1.29 5.90 -51.93 -0.31 0.98 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.95 8.02 -51.93 -0.42 0.53 16 33 H 0.06 0.82 7.53 -51.93 -0.39 0.43 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.37 4.30 9.12 45.56 0.42 4.72 16 37 H 0.07 1.29 7.52 -51.93 -0.39 0.89 16 38 H 0.06 1.38 5.88 -51.93 -0.31 1.08 16 LS Contribution 292.00 15.07 4.40 4.40 Total: -1.00 -28.23 292.00 -7.59 -35.82 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.67 Total: 5.06 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -0.37 Total: -15.61 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.46 Total: -35.94 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.47 Total: -9.47 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.23 -7.59 -35.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400040009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.064 kcal (2) G-P(sol) polarization free energy of solvation -28.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds