Wall clock time and date at job start Mon Mar 30 2020 03:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47431 * 2 1 4 4 H 1.08996 * 109.46843 * 55.00099 * 3 2 1 5 5 C 1.50696 * 109.47443 * 175.00136 * 3 2 1 6 6 H 1.07993 * 120.00247 * 120.00062 * 5 3 2 7 7 C 1.37884 * 119.99916 * 300.00457 * 5 3 2 8 8 N 1.31516 * 120.00038 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 119.99852 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47446 * 59.99894 * 9 7 5 11 11 H 1.48505 * 109.47059 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47439 * 299.99629 * 9 7 5 13 13 N 1.46899 * 109.47146 * 295.00202 * 3 2 1 14 14 C 1.48721 * 111.01657 * 179.61265 * 13 3 2 15 15 C 1.54376 * 104.52014 * 158.96479 * 14 13 3 16 16 H 1.09001 * 110.32102 * 95.21346 * 15 14 13 17 17 C 1.52992 * 110.32720 * 217.32143 * 15 14 13 18 18 C 1.52997 * 109.47482 * 292.17438 * 17 15 14 19 19 C 1.54264 * 105.14928 * 336.27524 * 15 14 13 20 20 H 1.08995 * 110.32218 * 241.05025 * 19 15 14 21 21 O 1.42899 * 110.32584 * 118.94307 * 19 15 14 22 22 C 1.48558 * 111.00172 * 295.12445 * 13 3 2 23 23 H 1.09004 * 109.46447 * 299.99772 * 1 2 3 24 24 H 1.09002 * 109.46666 * 59.99458 * 1 2 3 25 25 H 1.08993 * 109.47089 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47164 * 240.00430 * 2 1 3 27 27 H 1.08997 * 109.47530 * 120.00464 * 2 1 3 28 28 H 0.96997 * 119.99812 * 180.02562 * 8 7 5 29 29 H 1.09005 * 110.38458 * 40.24250 * 14 13 3 30 30 H 1.09003 * 110.50842 * 277.75328 * 14 13 3 31 31 H 1.09002 * 109.47103 * 172.17191 * 17 15 14 32 32 H 1.08998 * 109.46862 * 52.18003 * 17 15 14 33 33 H 1.09002 * 109.47153 * 59.99783 * 18 17 15 34 34 H 1.09001 * 109.46832 * 299.99974 * 18 17 15 35 35 H 1.09004 * 109.47261 * 179.97438 * 18 17 15 36 36 H 0.96700 * 113.99634 * 179.97438 * 21 19 15 37 37 H 1.09004 * 110.41182 * 82.18097 * 22 13 3 38 38 H 1.09007 * 110.50785 * 319.78799 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1434 0.8782 1.2279 8 7 3.4063 0.3372 2.1733 9 14 6.0050 0.8799 1.3810 10 1 6.5006 2.2797 1.3807 11 1 6.3979 0.2165 2.6502 12 1 6.5967 0.1451 0.2341 13 7 1.6515 2.0993 -1.2552 14 6 2.1231 3.5094 -1.2876 15 6 2.1405 3.8773 -2.7867 16 1 1.2122 4.3763 -3.0649 17 6 3.3396 4.7745 -3.0999 18 6 3.1491 6.1344 -2.4251 19 6 2.2691 2.5320 -3.5306 20 1 3.1865 2.5108 -4.1187 21 8 1.1350 2.3206 -4.3738 22 6 2.3202 1.4622 -2.4187 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8294 -0.0606 2.9502 29 1 3.1256 3.5842 -0.8661 30 1 1.4326 4.1555 -0.7455 31 1 3.4187 4.9119 -4.1783 32 1 4.2504 4.3074 -2.7254 33 1 3.0699 5.9969 -1.3467 34 1 2.2382 6.6014 -2.7997 35 1 4.0036 6.7734 -2.6478 36 1 1.1613 1.4895 -4.8673 37 1 1.7779 0.5681 -2.7263 38 1 3.3538 1.2145 -2.1767 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400040009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:13 Heat of formation + Delta-G solvation = -81.685705 kcal Electronic energy + Delta-G solvation = -17072.010174 eV Core-core repulsion = 14526.898810 eV Total energy + Delta-G solvation = -2545.111365 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.53689 -37.37774 -35.93189 -34.24061 -32.99857 -30.09724 -28.66107 -27.89975 -25.23468 -23.54775 -22.75277 -21.22068 -20.39624 -18.51117 -17.87339 -17.21422 -16.29409 -16.13567 -15.55256 -14.84485 -14.71794 -14.37083 -14.25231 -13.76343 -13.67511 -13.25669 -13.20925 -12.89264 -12.80817 -12.54736 -12.44542 -12.40491 -12.04619 -11.70522 -11.62772 -11.46506 -11.35718 -11.27405 -10.96962 -10.72381 -10.42703 -9.00649 -8.03881 -6.25599 1.38310 1.39002 1.46065 2.39608 3.14942 3.34176 3.54409 3.76630 3.91226 4.21370 4.34061 4.42940 4.51447 4.62461 4.67776 4.71323 4.79569 4.87865 4.95579 4.97568 5.09561 5.13016 5.15541 5.22559 5.25360 5.39087 5.41272 5.43969 5.50987 5.61324 5.75723 6.02569 6.16259 6.34821 6.48393 6.94742 7.00062 7.44266 8.92211 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.010527 C = 0.008180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.185464 B = 2659.125873 C = 3422.326714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.208 3.792 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.946 3.054 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.510 5.510 14 C 0.043 3.957 15 C -0.079 4.079 16 H 0.080 0.920 17 C -0.110 4.110 18 C -0.148 4.148 19 C 0.110 3.890 20 H 0.074 0.926 21 O -0.572 6.572 22 C 0.009 3.991 23 H 0.031 0.969 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.030 0.970 27 H 0.063 0.937 28 H 0.261 0.739 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.390 0.610 37 H 0.070 0.930 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 4.944 -10.647 11.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.101 3.899 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.075 0.925 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.233 5.233 14 C -0.086 4.086 15 C -0.098 4.098 16 H 0.098 0.902 17 C -0.148 4.148 18 C -0.206 4.206 19 C 0.050 3.950 20 H 0.092 0.908 21 O -0.379 6.379 22 C -0.119 4.119 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.239 0.761 37 H 0.089 0.911 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.034 5.380 -10.239 11.612 hybrid contribution 1.986 -0.800 0.664 2.242 sum 0.953 4.580 -9.575 10.657 Atomic orbital electron populations 1.21576 0.96524 0.99806 1.00498 1.21400 0.94312 0.98161 1.00313 1.19156 0.92220 0.91586 0.86978 0.98306 1.21891 0.93697 1.37772 1.05417 0.92535 1.25634 1.01848 0.94916 0.95522 1.70005 1.36422 1.38881 1.09781 0.85798 0.81326 0.78291 0.77372 1.19894 1.21126 1.19664 1.65670 1.52340 1.01917 1.03376 1.23053 0.98731 0.90960 0.95808 1.21898 0.99911 0.94640 0.93321 0.90186 1.21552 0.96285 0.95643 1.01275 1.21741 1.02302 0.96206 1.00306 1.22607 0.88313 0.94219 0.89828 0.90792 1.86473 1.44976 1.45337 1.61131 1.23695 0.98128 0.97791 0.92323 0.94978 0.92782 0.93395 0.95106 0.91884 0.92959 0.94140 0.92235 0.90327 0.92747 0.93739 0.91991 0.91423 0.76105 0.91119 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 9.80 71.98 0.71 -4.56 16 2 C -0.10 -5.01 5.18 30.59 0.16 -4.85 16 3 C 0.21 10.55 1.83 44.17 0.08 10.63 16 4 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 5 C -0.55 -29.21 6.51 25.60 0.17 -29.05 16 6 H 0.06 2.97 5.69 -2.91 -0.02 2.95 16 7 C 0.02 1.12 5.29 84.66 0.45 1.57 16 8 N -0.91 -52.03 11.29 21.45 0.24 -51.79 16 9 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 N -0.51 -22.06 4.85 -860.28 -4.17 -26.23 16 14 C 0.04 1.69 5.04 86.42 0.44 2.12 16 15 C -0.08 -2.49 2.88 -9.90 -0.03 -2.52 16 16 H 0.08 2.57 7.98 -2.39 -0.02 2.55 16 17 C -0.11 -2.86 5.11 30.59 0.16 -2.71 16 18 C -0.15 -3.50 9.77 71.98 0.70 -2.79 16 19 C 0.11 3.39 4.07 31.49 0.13 3.52 16 20 H 0.07 1.99 7.71 -2.39 -0.02 1.97 16 21 O -0.57 -16.51 13.27 -148.98 -1.98 -18.48 16 22 C 0.01 0.36 5.06 86.45 0.44 0.79 16 23 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.05 2.17 7.75 -2.39 -0.02 2.15 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.03 1.44 6.84 -2.38 -0.02 1.43 16 27 H 0.06 3.44 5.95 -2.39 -0.01 3.42 16 28 H 0.26 14.28 8.31 -92.71 -0.77 13.50 16 29 H 0.04 1.75 5.90 -2.38 -0.01 1.74 16 30 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.52 8.02 -2.39 -0.02 1.51 16 33 H 0.04 1.17 7.53 -2.39 -0.02 1.16 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.39 7.78 9.12 -74.06 -0.68 7.10 16 37 H 0.07 2.60 7.52 -2.38 -0.02 2.59 16 38 H 0.04 1.89 5.88 -2.38 -0.01 1.88 16 Total: -1.00 -60.48 292.00 -0.14 -60.62 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.35 Total: 18.85 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 3.39 Total: -27.85 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -3.93 Total: -78.02 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -1.98 Total: -18.48 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -60.48 -0.14 -60.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400040009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.068 kcal (2) G-P(sol) polarization free energy of solvation -60.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds