Wall clock time and date at job start Mon Mar 30 2020 03:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 H 1.08994 * 109.47205 * 54.83133 * 3 2 1 5 5 C 1.50708 * 109.46752 * 174.83293 * 3 2 1 6 6 H 1.08001 * 119.99742 * 114.65672 * 5 3 2 7 7 C 1.37871 * 119.99692 * 294.65169 * 5 3 2 8 8 N 1.31517 * 120.00557 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99650 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47605 * 59.99680 * 9 7 5 11 11 H 1.48505 * 109.47230 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47006 * 299.99734 * 9 7 5 13 13 N 1.46894 * 109.47034 * 294.82898 * 3 2 1 14 14 C 1.48559 * 111.00329 * 299.29439 * 13 3 2 15 15 C 1.54381 * 104.59614 * 200.96135 * 14 13 3 16 16 H 1.09002 * 110.32282 * 264.85240 * 15 14 13 17 17 O 1.42901 * 110.32650 * 142.74711 * 15 14 13 18 18 C 1.54256 * 105.06282 * 23.85130 * 15 14 13 19 19 H 1.08998 * 110.32984 * 241.11146 * 18 15 14 20 20 C 1.53000 * 110.32490 * 118.89443 * 18 15 14 21 21 C 1.52998 * 109.47097 * 175.00320 * 20 18 15 22 22 C 1.48566 * 110.99984 * 183.87478 * 13 3 2 23 23 H 1.09001 * 109.46779 * 295.29713 * 1 2 3 24 24 H 1.09002 * 109.46993 * 55.29931 * 1 2 3 25 25 H 1.08997 * 109.47089 * 175.30435 * 1 2 3 26 26 H 1.08998 * 109.46913 * 240.00161 * 2 1 3 27 27 H 1.08998 * 109.47208 * 120.00392 * 2 1 3 28 28 H 0.96999 * 120.00179 * 179.97438 * 8 7 5 29 29 H 1.08999 * 110.41514 * 82.18066 * 14 13 3 30 30 H 1.09002 * 110.51147 * 319.78619 * 14 13 3 31 31 H 0.96708 * 113.99696 * 61.45443 * 17 15 14 32 32 H 1.08992 * 109.47195 * 295.00100 * 20 18 15 33 33 H 1.08996 * 109.47269 * 55.00532 * 20 18 15 34 34 H 1.09008 * 109.47286 * 300.00112 * 21 20 18 35 35 H 1.08998 * 109.47393 * 60.00068 * 21 20 18 36 36 H 1.09001 * 109.47418 * 180.02562 * 21 20 18 37 37 H 1.09002 * 110.40932 * 277.82137 * 22 13 3 38 38 H 1.09001 * 110.40827 * 40.26488 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9823 0.8400 5 6 3.5416 1.4444 0.1280 6 1 4.1523 1.8096 -0.6845 7 6 4.1356 0.9800 1.2823 8 7 3.3919 0.5349 2.2715 9 14 5.9969 0.9830 1.4411 10 1 6.5026 2.3731 1.3116 11 1 6.3813 0.4374 2.7677 12 1 6.5864 0.1400 0.3701 13 7 1.6549 2.0980 -1.2569 14 6 2.2474 1.3981 -2.4257 15 6 2.2289 2.4475 -3.5579 16 1 1.3365 2.3263 -4.1719 17 8 3.4038 2.3300 -4.3629 18 6 2.2062 3.8122 -2.8393 19 1 1.3017 4.3621 -3.0992 20 6 3.4485 4.6266 -3.2059 21 6 3.3462 6.0208 -2.5839 22 6 2.2130 3.4727 -1.3332 23 1 -0.3633 0.4391 0.9291 24 1 -0.3633 0.5851 -0.8449 25 1 -0.3633 -1.0242 -0.0841 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8099 0.2079 3.0834 29 1 1.6419 0.5339 -2.6985 30 1 3.2706 1.0912 -2.2087 31 1 3.4943 1.4742 -4.8040 32 1 4.3378 4.1237 -2.8261 33 1 3.5171 4.7166 -4.2900 34 1 2.4568 6.5238 -2.9638 35 1 3.2777 5.9309 -1.4998 36 1 4.2310 6.6012 -2.8455 37 1 1.5813 4.1704 -0.7834 38 1 3.2308 3.4919 -0.9438 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400040010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:15 Heat of formation + Delta-G solvation = -61.511611 kcal Electronic energy + Delta-G solvation = -17131.532912 eV Core-core repulsion = 14587.296362 eV Total energy + Delta-G solvation = -2544.236550 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.05599 -35.90578 -34.29685 -32.47047 -31.31133 -28.60463 -27.11943 -25.99717 -23.46366 -22.12874 -21.27236 -19.38987 -18.76574 -16.98473 -16.24095 -15.53431 -14.70532 -14.26609 -13.95282 -13.47903 -13.12374 -12.83238 -12.71590 -12.49954 -11.82149 -11.70000 -11.60324 -11.32996 -11.06281 -10.88945 -10.86761 -10.64948 -10.38766 -10.18515 -9.96436 -9.84195 -9.68021 -9.51154 -9.31235 -9.12367 -8.37524 -7.25021 -6.01156 -4.12186 3.28187 3.33203 3.36472 4.39628 4.56516 5.11966 5.21113 5.25298 5.35328 5.45675 5.62358 5.71560 5.95105 6.04726 6.07950 6.27405 6.30978 6.36835 6.42884 6.51747 6.55975 6.63188 6.65742 6.79223 6.82287 6.96745 7.02536 7.14688 7.24886 7.55983 7.70230 7.91190 7.99608 8.10153 8.19733 8.39898 8.97726 9.54476 11.00578 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.010769 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.241977 B = 2599.328530 C = 3258.898460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C 0.202 3.798 4 H 0.044 0.956 5 C -0.544 4.544 6 H 0.059 0.941 7 C 0.070 3.930 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.507 5.507 14 C 0.006 3.994 15 C 0.098 3.902 16 H 0.053 0.947 17 O -0.564 6.564 18 C -0.085 4.085 19 H 0.072 0.928 20 C -0.100 4.100 21 C -0.153 4.153 22 C 0.041 3.959 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.025 0.975 26 H 0.031 0.969 27 H 0.082 0.918 28 H 0.262 0.738 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.370 0.630 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 3.763 -9.133 10.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C 0.095 3.905 4 H 0.062 0.938 5 C -0.583 4.583 6 H 0.077 0.923 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.231 5.231 14 C -0.123 4.123 15 C 0.039 3.961 16 H 0.071 0.929 17 O -0.368 6.368 18 C -0.104 4.104 19 H 0.091 0.909 20 C -0.137 4.137 21 C -0.210 4.210 22 C -0.087 4.087 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.216 0.784 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.646 4.289 -8.714 10.066 hybrid contribution 1.810 -0.746 0.139 1.962 sum -0.837 3.543 -8.574 9.315 Atomic orbital electron populations 1.21738 0.98721 0.98579 1.00773 1.21533 0.92402 0.99205 1.01318 1.19393 0.93320 0.91151 0.86596 0.93818 1.21660 0.92690 1.42690 1.01230 0.92288 1.24904 0.97736 0.94956 0.95732 1.69905 1.34922 1.41887 1.05602 0.86761 0.86276 0.78424 0.77195 1.20280 1.21271 1.20328 1.65739 1.52143 1.01485 1.03781 1.23664 1.00374 0.96413 0.91818 1.22631 0.86294 0.96138 0.91008 0.92895 1.86536 1.44970 1.39252 1.66065 1.22002 0.98280 0.94039 0.96082 0.90912 1.21225 0.97869 0.94452 1.00198 1.21829 1.00665 0.97091 1.01430 1.23088 1.00352 0.92082 0.93200 0.94073 0.93146 0.95548 0.94992 0.89963 0.92840 0.91788 0.91437 0.78373 0.91702 0.92167 0.93343 0.92447 0.93402 0.91879 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.86 37.16 0.37 -2.48 16 2 C -0.11 -2.49 5.15 -26.73 -0.14 -2.62 16 3 C 0.20 4.96 1.80 -68.86 -0.12 4.84 16 4 H 0.04 1.21 8.14 -51.93 -0.42 0.78 16 5 C -0.54 -14.39 6.42 -34.44 -0.22 -14.61 16 6 H 0.06 1.59 5.70 -52.49 -0.30 1.29 16 7 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 8 N -0.89 -24.88 11.71 55.43 0.65 -24.23 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.51 -10.71 4.81 -223.40 -1.08 -11.79 16 14 C 0.01 0.12 4.89 -2.18 -0.01 0.11 16 15 C 0.10 1.61 4.40 -25.35 -0.11 1.50 16 16 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 17 O -0.56 -8.67 11.54 -35.23 -0.41 -9.08 16 18 C -0.09 -1.42 3.06 -89.24 -0.27 -1.69 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 20 C -0.10 -1.56 4.38 -26.73 -0.12 -1.68 16 21 C -0.15 -2.10 9.78 37.16 0.36 -1.74 16 22 C 0.04 0.81 5.09 -2.18 -0.01 0.80 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.98 7.63 -51.93 -0.40 0.59 16 25 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.03 0.73 6.70 -51.93 -0.35 0.38 16 27 H 0.08 2.16 6.41 -51.93 -0.33 1.82 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.06 1.17 7.55 -51.93 -0.39 0.78 16 30 H 0.07 1.47 6.03 -51.93 -0.31 1.16 16 31 H 0.37 4.20 9.11 45.56 0.41 4.62 16 32 H 0.06 1.15 7.90 -51.93 -0.41 0.74 16 33 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 34 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.06 0.83 7.58 -51.93 -0.39 0.44 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 1.46 5.65 -51.93 -0.29 1.17 16 LS Contribution 290.44 15.07 4.38 4.38 Total: -1.00 -28.01 290.44 -7.53 -35.54 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.68 Total: 4.84 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -0.37 Total: -15.80 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.43 Total: -36.02 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.41 Total: -9.08 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.01 -7.53 -35.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400040010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.976 kcal (2) G-P(sol) polarization free energy of solvation -28.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds