Wall clock time and date at job start Mon Mar 30 2020 03:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 H 1.08994 * 109.47205 * 54.83133 * 3 2 1 5 5 C 1.50708 * 109.46752 * 174.83293 * 3 2 1 6 6 H 1.08001 * 119.99742 * 114.65672 * 5 3 2 7 7 C 1.37871 * 119.99692 * 294.65169 * 5 3 2 8 8 N 1.31517 * 120.00557 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99650 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47605 * 59.99680 * 9 7 5 11 11 H 1.48505 * 109.47230 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47006 * 299.99734 * 9 7 5 13 13 N 1.46894 * 109.47034 * 294.82898 * 3 2 1 14 14 C 1.48559 * 111.00329 * 299.29439 * 13 3 2 15 15 C 1.54381 * 104.59614 * 200.96135 * 14 13 3 16 16 H 1.09002 * 110.32282 * 264.85240 * 15 14 13 17 17 O 1.42901 * 110.32650 * 142.74711 * 15 14 13 18 18 C 1.54256 * 105.06282 * 23.85130 * 15 14 13 19 19 H 1.08998 * 110.32984 * 241.11146 * 18 15 14 20 20 C 1.53000 * 110.32490 * 118.89443 * 18 15 14 21 21 C 1.52998 * 109.47097 * 175.00320 * 20 18 15 22 22 C 1.48566 * 110.99984 * 183.87478 * 13 3 2 23 23 H 1.09001 * 109.46779 * 295.29713 * 1 2 3 24 24 H 1.09002 * 109.46993 * 55.29931 * 1 2 3 25 25 H 1.08997 * 109.47089 * 175.30435 * 1 2 3 26 26 H 1.08998 * 109.46913 * 240.00161 * 2 1 3 27 27 H 1.08998 * 109.47208 * 120.00392 * 2 1 3 28 28 H 0.96999 * 120.00179 * 179.97438 * 8 7 5 29 29 H 1.08999 * 110.41514 * 82.18066 * 14 13 3 30 30 H 1.09002 * 110.51147 * 319.78619 * 14 13 3 31 31 H 0.96708 * 113.99696 * 61.45443 * 17 15 14 32 32 H 1.08992 * 109.47195 * 295.00100 * 20 18 15 33 33 H 1.08996 * 109.47269 * 55.00532 * 20 18 15 34 34 H 1.09008 * 109.47286 * 300.00112 * 21 20 18 35 35 H 1.08998 * 109.47393 * 60.00068 * 21 20 18 36 36 H 1.09001 * 109.47418 * 180.02562 * 21 20 18 37 37 H 1.09002 * 110.40932 * 277.82137 * 22 13 3 38 38 H 1.09001 * 110.40827 * 40.26488 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6030 1.9823 0.8400 5 6 3.5416 1.4444 0.1280 6 1 4.1523 1.8096 -0.6845 7 6 4.1356 0.9800 1.2823 8 7 3.3919 0.5349 2.2715 9 14 5.9969 0.9830 1.4411 10 1 6.5026 2.3731 1.3116 11 1 6.3813 0.4374 2.7677 12 1 6.5864 0.1400 0.3701 13 7 1.6549 2.0980 -1.2569 14 6 2.2474 1.3981 -2.4257 15 6 2.2289 2.4475 -3.5579 16 1 1.3365 2.3263 -4.1719 17 8 3.4038 2.3300 -4.3629 18 6 2.2062 3.8122 -2.8393 19 1 1.3017 4.3621 -3.0992 20 6 3.4485 4.6266 -3.2059 21 6 3.3462 6.0208 -2.5839 22 6 2.2130 3.4727 -1.3332 23 1 -0.3633 0.4391 0.9291 24 1 -0.3633 0.5851 -0.8449 25 1 -0.3633 -1.0242 -0.0841 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8099 0.2079 3.0834 29 1 1.6419 0.5339 -2.6985 30 1 3.2706 1.0912 -2.2087 31 1 3.4943 1.4742 -4.8040 32 1 4.3378 4.1237 -2.8261 33 1 3.5171 4.7166 -4.2900 34 1 2.4568 6.5238 -2.9638 35 1 3.2777 5.9309 -1.4998 36 1 4.2310 6.6012 -2.8455 37 1 1.5813 4.1704 -0.7834 38 1 3.2308 3.4919 -0.9438 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400040010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:15 Heat of formation + Delta-G solvation = -81.051592 kcal Electronic energy + Delta-G solvation = -17132.380230 eV Core-core repulsion = 14587.296362 eV Total energy + Delta-G solvation = -2545.083867 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.56957 -37.46778 -35.70456 -34.26644 -33.06427 -30.16497 -28.58714 -27.84545 -25.22451 -23.58291 -22.83583 -21.04011 -20.35837 -18.64026 -17.86688 -17.21745 -16.41626 -15.80941 -15.40069 -15.10807 -14.81800 -14.41767 -14.29892 -13.94000 -13.34605 -13.21054 -13.18362 -13.02842 -12.77825 -12.61528 -12.46436 -12.31925 -11.99819 -11.70088 -11.68352 -11.45660 -11.32213 -11.15845 -10.98844 -10.67281 -10.45715 -9.07453 -8.07957 -6.26500 1.35399 1.36291 1.43544 2.38057 3.13747 3.26061 3.71657 3.78452 3.98569 4.08071 4.39592 4.47551 4.53378 4.65063 4.70233 4.72260 4.75600 4.86022 4.97603 5.03250 5.12130 5.18779 5.22183 5.23490 5.31111 5.38999 5.44083 5.47522 5.55721 5.62208 5.75060 5.95764 6.14952 6.31000 6.45551 6.93436 6.97270 7.42772 8.90502 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.010769 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.241977 B = 2599.328530 C = 3258.898460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 C 0.209 3.791 4 H 0.005 0.995 5 C -0.547 4.547 6 H 0.050 0.950 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 0.942 3.058 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.274 1.274 13 N -0.506 5.506 14 C 0.008 3.992 15 C 0.109 3.891 16 H 0.081 0.919 17 O -0.572 6.572 18 C -0.081 4.081 19 H 0.095 0.905 20 C -0.093 4.093 21 C -0.150 4.150 22 C 0.042 3.958 23 H 0.032 0.968 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.050 0.950 28 H 0.262 0.738 29 H 0.075 0.925 30 H 0.037 0.963 31 H 0.389 0.611 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 4.214 -11.037 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.139 4.139 3 C 0.101 3.899 4 H 0.023 0.977 5 C -0.586 4.586 6 H 0.068 0.932 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.768 3.232 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.230 5.230 14 C -0.121 4.121 15 C 0.049 3.951 16 H 0.099 0.901 17 O -0.379 6.379 18 C -0.100 4.100 19 H 0.114 0.886 20 C -0.131 4.131 21 C -0.207 4.207 22 C -0.087 4.087 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.238 0.762 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.021 4.733 -10.639 12.030 hybrid contribution 1.928 -0.880 0.704 2.233 sum -1.093 3.854 -9.935 10.712 Atomic orbital electron populations 1.21603 0.96023 1.00225 1.00758 1.21375 0.94762 0.97939 0.99818 1.19143 0.91987 0.91626 0.87108 0.97682 1.21863 0.93899 1.41936 1.00879 0.93187 1.25578 1.01551 0.94983 0.95644 1.70021 1.36325 1.42782 1.05951 0.85867 0.81761 0.78315 0.77257 1.20168 1.20784 1.19915 1.65651 1.52147 1.02142 1.03024 1.23691 0.98547 0.97728 0.92139 1.22532 0.87694 0.94453 0.90385 0.90124 1.86502 1.44676 1.40839 1.65843 1.22023 0.99750 0.94862 0.93396 0.88645 1.21146 0.96127 0.95030 1.00766 1.21803 1.02249 0.96273 1.00374 1.23061 0.98280 0.91472 0.95875 0.94877 0.92140 0.93192 0.94697 0.93110 0.92930 0.90695 0.94475 0.76218 0.94548 0.91028 0.91414 0.93916 0.92173 0.91780 0.94843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.86 71.98 0.71 -4.37 16 2 C -0.10 -4.75 5.15 30.59 0.16 -4.59 16 3 C 0.21 10.50 1.80 44.17 0.08 10.58 16 4 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 5 C -0.55 -29.75 6.42 25.60 0.16 -29.58 16 6 H 0.05 2.77 5.70 -2.91 -0.02 2.75 16 7 C 0.02 1.25 5.30 84.65 0.45 1.69 16 8 N -0.91 -52.62 11.71 21.45 0.25 -52.37 16 9 Si 0.94 44.16 29.54 68.60 2.03 46.19 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 13 N -0.51 -21.26 4.81 -860.70 -4.14 -25.40 16 14 C 0.01 0.29 4.89 86.45 0.42 0.71 16 15 C 0.11 3.27 4.40 31.49 0.14 3.41 16 16 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 17 O -0.57 -16.15 11.54 -148.98 -1.72 -17.87 16 18 C -0.08 -2.54 3.06 -9.90 -0.03 -2.57 16 19 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 20 C -0.09 -2.76 4.38 30.59 0.13 -2.62 16 21 C -0.15 -3.83 9.78 71.98 0.70 -3.13 16 22 C 0.04 1.64 5.09 86.45 0.44 2.08 16 23 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 2.25 7.63 -2.39 -0.02 2.23 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.03 1.59 6.70 -2.39 -0.02 1.57 16 27 H 0.05 2.72 6.41 -2.39 -0.02 2.71 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.68 16 29 H 0.07 2.60 7.55 -2.39 -0.02 2.58 16 30 H 0.04 1.62 6.03 -2.39 -0.01 1.60 16 31 H 0.39 7.77 9.11 -74.05 -0.67 7.10 16 32 H 0.04 1.27 7.90 -2.39 -0.02 1.25 16 33 H 0.07 1.98 7.68 -2.39 -0.02 1.96 16 34 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.04 1.20 7.58 -2.39 -0.02 1.18 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.03 1.53 5.65 -2.39 -0.01 1.52 16 Total: -1.00 -60.90 290.44 0.14 -60.77 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.35 Total: 17.08 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 3.37 Total: -28.39 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -3.89 Total: -77.78 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -1.72 Total: -17.87 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -60.90 0.14 -60.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400040010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.283 kcal (2) G-P(sol) polarization free energy of solvation -60.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds