Wall clock time and date at job start Mon Mar 30 2020 03:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47029 * 2 1 4 4 H 1.08999 * 109.47493 * 321.60038 * 3 2 1 5 5 C 1.50705 * 109.47221 * 201.60542 * 3 2 1 6 6 H 1.07999 * 120.00213 * 242.57468 * 5 3 2 7 7 C 1.37881 * 119.99603 * 62.56908 * 5 3 2 8 8 N 1.31514 * 119.99832 * 198.96439 * 7 5 3 9 9 Si 1.86795 * 119.99993 * 18.97089 * 7 5 3 10 10 H 1.48500 * 109.47402 * 90.59625 * 9 7 5 11 11 H 1.48506 * 109.47267 * 210.59387 * 9 7 5 12 12 H 1.48500 * 109.47222 * 330.59505 * 9 7 5 13 13 N 1.46896 * 109.47668 * 81.60701 * 3 2 1 14 14 C 1.46907 * 111.00096 * 51.79967 * 13 3 2 15 15 C 1.46903 * 111.00176 * 287.84818 * 13 3 2 16 16 H 1.09005 * 110.98808 * 76.77845 * 15 13 3 17 17 C 1.54949 * 111.15839 * 312.56270 * 15 13 3 18 18 O 1.43644 * 105.13640 * 205.62110 * 17 15 13 19 19 C 1.43233 * 109.97064 * 24.42056 * 18 17 15 20 20 H 1.09000 * 109.83526 * 238.77705 * 19 18 17 21 21 C 1.53004 * 109.82895 * 117.80712 * 19 18 17 22 22 C 1.54384 * 107.59221 * 358.29236 * 19 18 17 23 23 H 1.08999 * 109.47469 * 304.28513 * 1 2 3 24 24 H 1.08996 * 109.47063 * 64.28852 * 1 2 3 25 25 H 1.09000 * 109.46819 * 184.29024 * 1 2 3 26 26 H 1.08998 * 109.47623 * 239.99529 * 2 1 3 27 27 H 1.09006 * 109.47162 * 119.99287 * 2 1 3 28 28 H 0.97001 * 120.00022 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46842 * 296.05267 * 14 13 3 30 30 H 1.09001 * 109.46927 * 56.04426 * 14 13 3 31 31 H 1.08998 * 109.46972 * 176.05041 * 14 13 3 32 32 H 1.09000 * 110.30623 * 324.53144 * 17 15 13 33 33 H 1.08996 * 110.31383 * 86.70173 * 17 15 13 34 34 H 1.09000 * 109.46700 * 301.86499 * 21 19 18 35 35 H 1.08993 * 109.47056 * 61.86628 * 21 19 18 36 36 H 1.09005 * 109.47292 * 181.86859 * 21 19 18 37 37 H 1.08998 * 110.84907 * 220.44865 * 22 19 18 38 38 H 1.09003 * 110.84804 * 96.82940 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.4018 2.0535 -0.6383 5 6 3.4529 1.4758 -0.5232 6 1 4.2569 1.8133 0.1141 7 6 3.7191 1.0753 -1.8154 8 7 4.9440 0.7455 -2.1625 9 14 2.3400 1.0013 -3.0731 10 1 2.2400 2.3058 -3.7756 11 1 2.6265 -0.0713 -4.0595 12 1 1.0569 0.7105 -2.3843 13 7 2.0126 1.9716 1.3701 14 6 2.7026 1.0658 2.2982 15 6 0.6338 2.2250 1.8092 16 1 0.1317 1.2948 2.0755 17 6 -0.1632 3.0006 0.7303 18 8 -1.1921 3.6963 1.4519 19 6 -0.7874 3.8948 2.8115 20 1 -1.5065 3.4265 3.4835 21 6 -0.6929 5.3921 3.1116 22 6 0.5983 3.2371 2.9866 23 1 -0.3634 0.5789 0.8491 24 1 -0.3633 0.4458 -0.9259 25 1 -0.3633 -1.0248 0.0769 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 5.1313 0.4641 -3.0717 29 1 2.1698 0.1159 2.3422 30 1 3.7211 0.8951 1.9494 31 1 2.7288 1.5141 3.2913 32 1 0.4859 3.7108 0.2181 33 1 -0.6055 2.3072 0.0151 34 1 0.0153 5.8562 2.4252 35 1 -1.6739 5.8503 2.9863 36 1 -0.3527 5.5364 4.1371 37 1 0.6644 2.7207 3.9442 38 1 1.3937 3.9758 2.8872 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401429121.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:20 Heat of formation + Delta-G solvation = -30.552040 kcal Electronic energy + Delta-G solvation = -17277.584749 eV Core-core repulsion = 14734.690707 eV Total energy + Delta-G solvation = -2542.894043 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.75396 -37.19484 -32.89522 -32.02951 -31.30224 -30.02812 -27.46617 -26.17498 -24.24596 -22.60817 -21.14219 -20.67223 -18.71259 -16.95709 -16.83501 -15.65320 -15.26632 -14.38466 -14.12194 -13.91246 -13.50385 -13.00724 -12.67119 -12.57157 -12.49273 -12.34871 -11.85486 -11.71257 -11.54077 -11.01507 -10.95561 -10.81634 -10.69738 -10.57811 -10.48198 -10.09344 -9.70157 -9.58078 -9.26420 -9.21602 -8.33928 -7.34818 -6.12166 -4.02755 3.27944 3.37234 3.40347 4.02268 4.41763 4.69174 4.82410 5.06866 5.15260 5.18477 5.44942 5.45691 5.54489 5.74228 5.79709 5.84942 5.92683 6.01484 6.03111 6.04781 6.13473 6.18597 6.25160 6.30599 6.43078 6.51524 6.63651 6.75822 6.78669 6.94662 7.20711 7.31744 7.61354 7.91352 8.06202 8.63311 9.01693 9.55184 11.00468 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033159 B = 0.008876 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.225885 B = 3153.713784 C = 3316.841738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.160 4.160 3 C 0.187 3.813 4 H 0.038 0.962 5 C -0.510 4.510 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.889 5.889 9 Si 0.854 3.146 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.252 1.252 13 N -0.511 5.511 14 C 0.031 3.969 15 C 0.043 3.957 16 H 0.060 0.940 17 C 0.050 3.950 18 O -0.385 6.385 19 C 0.076 3.924 20 H 0.072 0.928 21 C -0.160 4.160 22 C -0.142 4.142 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.263 0.737 29 H 0.021 0.979 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.167 2.804 8.960 13.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.199 4.199 3 C 0.079 3.921 4 H 0.056 0.944 5 C -0.548 4.548 6 H 0.097 0.903 7 C -0.125 4.125 8 N -0.526 5.526 9 Si 0.680 3.320 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.176 1.176 13 N -0.235 5.235 14 C -0.117 4.117 15 C -0.066 4.066 16 H 0.077 0.923 17 C -0.026 4.026 18 O -0.304 6.304 19 C 0.018 3.982 20 H 0.090 0.910 21 C -0.217 4.217 22 C -0.180 4.180 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.983 3.268 8.720 13.652 hybrid contribution -0.814 -1.010 -0.801 1.524 sum -10.797 2.258 7.919 13.579 Atomic orbital electron populations 1.22421 0.98557 1.00487 1.01562 1.22672 0.93107 1.02050 1.02078 1.19794 0.98003 0.89068 0.85196 0.94406 1.20842 0.91586 1.44121 0.98245 0.90255 1.24835 0.95117 0.94187 0.98364 1.69998 1.20252 1.43268 1.19070 0.87315 0.84617 0.77967 0.82059 1.20521 1.21526 1.17580 1.62293 1.10758 1.46742 1.03705 1.22343 1.00640 0.93724 0.95020 1.23455 0.91731 0.96989 0.94465 0.92296 1.23692 0.89287 0.95249 0.94344 1.88389 1.41998 1.78245 1.21807 1.22647 0.95566 0.95592 0.84399 0.90985 1.22123 1.02263 0.95821 1.01524 1.23208 0.96995 0.99132 0.98705 0.92103 0.93108 0.94191 0.91957 0.92206 0.92700 0.96065 0.89985 0.93501 0.90906 0.89487 0.91962 0.92409 0.91836 0.90954 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 8.24 37.16 0.31 -2.80 16 2 C -0.16 -3.36 4.36 -26.73 -0.12 -3.47 16 3 C 0.19 4.21 1.29 -68.87 -0.09 4.12 16 4 H 0.04 0.88 4.52 -51.93 -0.23 0.65 16 5 C -0.51 -13.84 8.41 -34.44 -0.29 -14.13 16 6 H 0.08 2.36 7.42 -52.49 -0.39 1.98 16 7 C 0.08 2.17 5.11 -17.82 -0.09 2.08 16 8 N -0.89 -26.52 13.96 55.43 0.77 -25.74 16 9 Si 0.85 20.70 25.84 -169.99 -4.39 16.31 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.25 -5.67 4.63 56.52 0.26 -5.41 16 13 N -0.51 -10.15 4.59 -225.60 -1.04 -11.18 16 14 C 0.03 0.57 8.64 60.07 0.52 1.09 16 15 C 0.04 0.72 1.79 -65.46 -0.12 0.61 16 16 H 0.06 0.99 5.80 -51.93 -0.30 0.68 16 17 C 0.05 0.88 5.36 38.19 0.20 1.08 16 18 O -0.39 -6.39 11.02 -35.23 -0.39 -6.78 16 19 C 0.08 1.03 4.16 -26.00 -0.11 0.92 16 20 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 21 C -0.16 -1.87 9.44 37.16 0.35 -1.52 16 22 C -0.14 -2.02 5.74 -24.79 -0.14 -2.16 16 23 H 0.06 1.02 3.54 -51.93 -0.18 0.84 16 24 H 0.05 0.93 6.57 -51.93 -0.34 0.59 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.43 5.52 -51.93 -0.29 1.14 16 27 H 0.06 1.22 5.31 -51.93 -0.28 0.94 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.02 0.37 5.99 -51.93 -0.31 0.06 16 30 H 0.08 1.69 6.86 -51.93 -0.36 1.33 16 31 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 32 H 0.07 1.37 7.76 -51.93 -0.40 0.97 16 33 H 0.09 1.52 5.48 -51.93 -0.28 1.24 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.32 7.85 -51.93 -0.41 0.91 16 LS Contribution 274.34 15.07 4.13 4.13 Total: -1.00 -28.83 274.34 -6.47 -35.30 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.99 Total: 2.15 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 0.43 Total: -14.18 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.26 Total: -36.93 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.39 Total: -6.78 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.39 Total: 16.31 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.83 -6.47 -35.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401429121.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.745 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds