Wall clock time and date at job start Mon Mar 30 2020 03:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47029 * 2 1 4 4 H 1.08999 * 109.47493 * 321.60038 * 3 2 1 5 5 C 1.50705 * 109.47221 * 201.60542 * 3 2 1 6 6 H 1.07999 * 120.00213 * 242.57468 * 5 3 2 7 7 C 1.37881 * 119.99603 * 62.56908 * 5 3 2 8 8 N 1.31514 * 119.99832 * 198.96439 * 7 5 3 9 9 Si 1.86795 * 119.99993 * 18.97089 * 7 5 3 10 10 H 1.48500 * 109.47402 * 90.59625 * 9 7 5 11 11 H 1.48506 * 109.47267 * 210.59387 * 9 7 5 12 12 H 1.48500 * 109.47222 * 330.59505 * 9 7 5 13 13 N 1.46896 * 109.47668 * 81.60701 * 3 2 1 14 14 C 1.46907 * 111.00096 * 51.79967 * 13 3 2 15 15 C 1.46903 * 111.00176 * 287.84818 * 13 3 2 16 16 H 1.09005 * 110.98808 * 76.77845 * 15 13 3 17 17 C 1.54949 * 111.15839 * 312.56270 * 15 13 3 18 18 O 1.43644 * 105.13640 * 205.62110 * 17 15 13 19 19 C 1.43233 * 109.97064 * 24.42056 * 18 17 15 20 20 H 1.09000 * 109.83526 * 238.77705 * 19 18 17 21 21 C 1.53004 * 109.82895 * 117.80712 * 19 18 17 22 22 C 1.54384 * 107.59221 * 358.29236 * 19 18 17 23 23 H 1.08999 * 109.47469 * 304.28513 * 1 2 3 24 24 H 1.08996 * 109.47063 * 64.28852 * 1 2 3 25 25 H 1.09000 * 109.46819 * 184.29024 * 1 2 3 26 26 H 1.08998 * 109.47623 * 239.99529 * 2 1 3 27 27 H 1.09006 * 109.47162 * 119.99287 * 2 1 3 28 28 H 0.97001 * 120.00022 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46842 * 296.05267 * 14 13 3 30 30 H 1.09001 * 109.46927 * 56.04426 * 14 13 3 31 31 H 1.08998 * 109.46972 * 176.05041 * 14 13 3 32 32 H 1.09000 * 110.30623 * 324.53144 * 17 15 13 33 33 H 1.08996 * 110.31383 * 86.70173 * 17 15 13 34 34 H 1.09000 * 109.46700 * 301.86499 * 21 19 18 35 35 H 1.08993 * 109.47056 * 61.86628 * 21 19 18 36 36 H 1.09005 * 109.47292 * 181.86859 * 21 19 18 37 37 H 1.08998 * 110.84907 * 220.44865 * 22 19 18 38 38 H 1.09003 * 110.84804 * 96.82940 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.4018 2.0535 -0.6383 5 6 3.4529 1.4758 -0.5232 6 1 4.2569 1.8133 0.1141 7 6 3.7191 1.0753 -1.8154 8 7 4.9440 0.7455 -2.1625 9 14 2.3400 1.0013 -3.0731 10 1 2.2400 2.3058 -3.7756 11 1 2.6265 -0.0713 -4.0595 12 1 1.0569 0.7105 -2.3843 13 7 2.0126 1.9716 1.3701 14 6 2.7026 1.0658 2.2982 15 6 0.6338 2.2250 1.8092 16 1 0.1317 1.2948 2.0755 17 6 -0.1632 3.0006 0.7303 18 8 -1.1921 3.6963 1.4519 19 6 -0.7874 3.8948 2.8115 20 1 -1.5065 3.4265 3.4835 21 6 -0.6929 5.3921 3.1116 22 6 0.5983 3.2371 2.9866 23 1 -0.3634 0.5789 0.8491 24 1 -0.3633 0.4458 -0.9259 25 1 -0.3633 -1.0248 0.0769 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 5.1313 0.4641 -3.0717 29 1 2.1698 0.1159 2.3422 30 1 3.7211 0.8951 1.9494 31 1 2.7288 1.5141 3.2913 32 1 0.4859 3.7108 0.2181 33 1 -0.6055 2.3072 0.0151 34 1 0.0153 5.8562 2.4252 35 1 -1.6739 5.8503 2.9863 36 1 -0.3527 5.5364 4.1371 37 1 0.6644 2.7207 3.9442 38 1 1.3937 3.9758 2.8872 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401429121.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:19 Heat of formation + Delta-G solvation = -51.078744 kcal Electronic energy + Delta-G solvation = -17278.474854 eV Core-core repulsion = 14734.690707 eV Total energy + Delta-G solvation = -2543.784147 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.08527 -38.68801 -34.77648 -33.51966 -32.65045 -31.41875 -29.24470 -27.41100 -25.79314 -24.32163 -22.53922 -21.87285 -20.32598 -18.83916 -18.14752 -17.18588 -16.87408 -15.84148 -15.69073 -15.36240 -14.83326 -14.72477 -14.23691 -14.03317 -13.81946 -13.56572 -13.36891 -13.13634 -12.84631 -12.66116 -12.56573 -12.40027 -12.18325 -11.99043 -11.79306 -11.56187 -11.50066 -11.28890 -11.09545 -10.48613 -10.44053 -8.89452 -8.29149 -6.23016 1.33454 1.38865 1.46364 2.36504 2.77870 3.04319 3.33304 3.57880 3.91041 4.02390 4.16819 4.26325 4.33756 4.39249 4.42275 4.51868 4.57914 4.71224 4.74115 4.82228 4.86848 4.88229 4.93382 5.06254 5.13280 5.18449 5.19371 5.27751 5.30216 5.40564 5.59366 5.66220 6.05279 6.10420 6.42308 6.72395 6.81318 7.38531 8.87209 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033159 B = 0.008876 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.225885 B = 3153.713784 C = 3316.841738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.158 4.158 3 C 0.193 3.807 4 H 0.036 0.964 5 C -0.511 4.511 6 H 0.036 0.964 7 C 0.023 3.977 8 N -0.939 5.939 9 Si 0.915 3.085 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.223 1.223 13 N -0.527 5.527 14 C 0.036 3.964 15 C 0.042 3.958 16 H 0.071 0.929 17 C 0.053 3.947 18 O -0.397 6.397 19 C 0.070 3.930 20 H 0.096 0.904 21 C -0.157 4.157 22 C -0.135 4.135 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.040 0.960 27 H 0.063 0.937 28 H 0.264 0.736 29 H 0.032 0.968 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.983 2.739 10.337 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.197 4.197 3 C 0.085 3.915 4 H 0.053 0.947 5 C -0.549 4.549 6 H 0.054 0.946 7 C -0.175 4.175 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.146 1.146 13 N -0.252 5.252 14 C -0.112 4.112 15 C -0.066 4.066 16 H 0.089 0.911 17 C -0.023 4.023 18 O -0.316 6.316 19 C 0.013 3.987 20 H 0.113 0.887 21 C -0.215 4.215 22 C -0.173 4.173 23 H 0.093 0.907 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.824 3.213 10.126 16.653 hybrid contribution 0.132 -0.934 -1.110 1.456 sum -12.692 2.279 9.017 15.735 Atomic orbital electron populations 1.22337 0.95581 1.02250 1.02095 1.22535 0.95679 1.00249 1.01279 1.19566 0.94762 0.90352 0.86836 0.94656 1.21119 0.93157 1.42767 0.97813 0.94563 1.25625 0.97397 0.94102 1.00424 1.70134 1.22729 1.45450 1.19548 0.86332 0.82771 0.77662 0.79347 1.20592 1.21656 1.14584 1.62165 1.13204 1.47047 1.02741 1.22278 0.98672 0.94396 0.95837 1.23508 0.89676 0.98061 0.95397 0.91112 1.23549 0.89295 0.94839 0.94658 1.88381 1.41720 1.78214 1.23299 1.22921 0.95586 0.96913 0.83310 0.88664 1.22115 1.02363 0.94448 1.02531 1.23195 0.97147 0.98272 0.98682 0.90742 0.93300 0.91964 0.94126 0.91827 0.92736 0.94979 0.93399 0.90553 0.93108 0.89503 0.93474 0.91750 0.89522 0.88397 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.38 8.24 71.98 0.59 -4.79 16 2 C -0.16 -6.39 4.36 30.59 0.13 -6.25 16 3 C 0.19 8.62 1.29 44.17 0.06 8.67 16 4 H 0.04 1.61 4.52 -2.39 -0.01 1.60 16 5 C -0.51 -28.56 8.41 25.60 0.22 -28.35 16 6 H 0.04 2.28 7.42 -2.91 -0.02 2.26 16 7 C 0.02 1.30 5.11 84.66 0.43 1.73 16 8 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 9 Si 0.91 43.11 25.84 68.60 1.77 44.88 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.22 -9.38 4.63 99.48 0.46 -8.92 16 13 N -0.53 -20.43 4.59 -867.67 -3.98 -24.42 16 14 C 0.04 1.28 8.64 127.69 1.10 2.39 16 15 C 0.04 1.32 1.79 46.37 0.08 1.40 16 16 H 0.07 2.08 5.80 -2.38 -0.01 2.07 16 17 C 0.05 1.75 5.36 72.65 0.39 2.14 16 18 O -0.40 -12.13 11.02 -148.98 -1.64 -13.77 16 19 C 0.07 1.66 4.16 31.07 0.13 1.79 16 20 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 21 C -0.16 -3.21 9.44 71.98 0.68 -2.53 16 22 C -0.14 -3.40 5.74 31.85 0.18 -3.22 16 23 H 0.07 2.21 3.54 -2.39 -0.01 2.20 16 24 H 0.05 1.61 6.57 -2.39 -0.02 1.59 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.04 1.80 5.52 -2.39 -0.01 1.79 16 27 H 0.06 2.49 5.31 -2.38 -0.01 2.48 16 28 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.03 1.06 5.99 -2.39 -0.01 1.05 16 30 H 0.05 2.01 6.86 -2.39 -0.02 2.00 16 31 H 0.08 2.24 7.79 -2.39 -0.02 2.22 16 32 H 0.05 1.88 7.76 -2.39 -0.02 1.86 16 33 H 0.09 2.83 5.48 -2.39 -0.01 2.82 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.08 2.14 7.85 -2.39 -0.02 2.12 16 Total: -1.00 -63.89 274.34 1.24 -62.66 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.79 Total: 15.53 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 4.00 Total: -27.02 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -3.68 Total: -82.28 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -1.64 Total: -13.77 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.77 Total: 44.88 kcal Total: -63.89 1.24 -62.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401429121.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.577 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds