Wall clock time and date at job start Mon Mar 30 2020 03:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47311 * 2 1 4 4 H 1.09009 * 109.50500 * 305.08705 * 3 2 1 5 5 C 1.53098 * 109.50809 * 184.99770 * 3 2 1 6 6 N 1.47016 * 109.25650 * 183.17122 * 5 3 2 7 7 C 1.46904 * 110.99833 * 182.39270 * 6 5 3 8 8 H 1.09001 * 109.47093 * 186.36589 * 7 6 5 9 9 C 1.52999 * 109.46973 * 306.36846 * 7 6 5 10 10 C 1.50708 * 109.46990 * 66.36532 * 7 6 5 11 11 H 1.08000 * 119.99863 * 0.02562 * 10 7 6 12 12 C 1.37871 * 119.99708 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00513 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 119.99761 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47206 * 59.99813 * 14 12 10 16 16 H 1.48500 * 109.47057 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46924 * 299.99397 * 14 12 10 18 18 C 1.47015 * 110.75267 * 58.61888 * 6 5 3 19 19 H 1.08995 * 109.50726 * 61.31950 * 18 6 5 20 20 C 1.52998 * 109.50493 * 181.44603 * 18 6 5 21 21 C 1.53095 * 109.25739 * 301.37969 * 18 6 5 22 22 O 1.43015 * 109.54407 * 65.15010 * 3 2 1 23 23 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47224 * 300.00155 * 1 2 3 25 25 H 1.09001 * 109.46525 * 60.00121 * 1 2 3 26 26 H 1.08998 * 109.47224 * 239.99845 * 2 1 3 27 27 H 1.09001 * 109.46525 * 119.99879 * 2 1 3 28 28 H 1.09000 * 109.50481 * 63.24095 * 5 3 2 29 29 H 1.08995 * 109.54381 * 303.12925 * 5 3 2 30 30 H 1.08996 * 109.47069 * 299.99599 * 9 7 6 31 31 H 1.09001 * 109.47421 * 59.99944 * 9 7 6 32 32 H 1.09004 * 109.47050 * 179.97438 * 9 7 6 33 33 H 0.96995 * 120.00003 * 180.02562 * 13 12 10 34 34 H 1.08997 * 109.47244 * 179.78405 * 20 18 6 35 35 H 1.09003 * 109.47157 * 299.78244 * 20 18 6 36 36 H 1.08998 * 109.47100 * 59.78181 * 20 18 6 37 37 H 1.09002 * 109.50646 * 176.78576 * 21 18 6 38 38 H 1.09003 * 109.50955 * 296.87129 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6045 1.9825 -0.8408 5 6 3.5659 1.4452 -0.1257 6 7 4.0562 2.8290 -0.0487 7 6 5.5140 2.8814 -0.2223 8 1 5.8642 3.8990 -0.0490 9 6 6.1810 1.9352 0.7781 10 6 5.8683 2.4602 -1.6252 11 1 5.0885 2.1818 -2.3187 12 6 7.1879 2.4301 -2.0234 13 7 8.1375 2.7695 -1.1792 14 14 7.6271 1.9087 -3.7626 15 1 6.9803 2.8278 -4.7332 16 1 9.1007 1.9615 -3.9380 17 1 7.1493 0.5227 -3.9993 18 6 3.6538 3.4545 1.2194 19 1 4.0884 2.9014 2.0520 20 6 4.1470 4.9024 1.2540 21 6 2.1272 3.4316 1.3317 22 8 1.6656 2.0823 1.2230 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8530 1.0101 -1.0830 29 1 3.9996 0.8597 0.6849 30 1 5.9248 2.2398 1.7927 31 1 5.8308 0.9176 0.6048 32 1 7.2627 1.9737 0.6490 33 1 9.0659 2.7487 -1.4595 34 1 3.8451 5.3667 2.1928 35 1 5.2340 4.9180 1.1741 36 1 3.7134 5.4539 0.4199 37 1 1.8269 3.8425 2.2956 38 1 1.6942 4.0301 0.5301 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403930004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:27 Heat of formation + Delta-G solvation = -50.277312 kcal Electronic energy + Delta-G solvation = -17111.681357 eV Core-core repulsion = 14567.931962 eV Total energy + Delta-G solvation = -2543.749395 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.38923 -36.08865 -33.91622 -32.74268 -31.03450 -29.03967 -26.57239 -25.47786 -25.19181 -22.69968 -21.41062 -20.48503 -18.53790 -16.48784 -15.96096 -15.72479 -14.64527 -14.48872 -14.18102 -13.92182 -13.39635 -13.18082 -12.97686 -12.38179 -12.08554 -11.89339 -11.43481 -11.38032 -11.07598 -11.01409 -10.84241 -10.78865 -10.73881 -10.43146 -10.42425 -10.16495 -9.99032 -9.66946 -8.91882 -8.80800 -8.34699 -7.17063 -6.01255 -4.04838 3.31788 3.36215 3.38991 4.16691 4.39813 4.78855 5.19248 5.28958 5.31365 5.41741 5.45627 5.64611 5.70640 5.77676 5.90522 6.00571 6.03956 6.09843 6.13978 6.24635 6.32267 6.42506 6.49160 6.60096 6.63808 6.76000 6.82082 6.86687 7.14584 7.44685 7.63646 7.70456 7.83039 8.13636 8.36567 8.58612 9.00424 9.59915 11.05783 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.008857 C = 0.007298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.800785 B = 3160.733501 C = 3835.772020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.090 3.910 4 H 0.060 0.940 5 C 0.034 3.966 6 N -0.525 5.525 7 C 0.207 3.793 8 H 0.048 0.952 9 C -0.172 4.172 10 C -0.499 4.499 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.041 3.959 19 H 0.040 0.960 20 C -0.142 4.142 21 C 0.073 3.927 22 O -0.389 6.389 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.035 0.965 30 H 0.006 0.994 31 H 0.029 0.971 32 H 0.088 0.912 33 H 0.261 0.739 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.424 -1.383 3.730 11.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C 0.033 3.967 4 H 0.078 0.922 5 C -0.095 4.095 6 N -0.250 5.250 7 C 0.101 3.899 8 H 0.066 0.934 9 C -0.231 4.231 10 C -0.538 4.538 11 H 0.079 0.921 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.068 4.068 19 H 0.058 0.942 20 C -0.199 4.199 21 C -0.005 4.005 22 O -0.308 6.308 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.025 0.975 31 H 0.049 0.951 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.537 -1.176 3.488 11.162 hybrid contribution 1.007 -0.605 -0.425 1.249 sum -9.531 -1.781 3.063 10.168 Atomic orbital electron populations 1.21694 0.95657 1.00933 1.02039 1.21510 0.96170 0.95051 1.02590 1.22286 0.94746 0.93009 0.86691 0.92229 1.22624 0.92986 0.91574 1.02312 1.62618 1.16938 1.15562 1.29868 1.19399 0.79692 0.96132 0.94659 0.93411 1.22393 1.05533 0.99211 0.95957 1.21064 0.91819 1.44470 0.96413 0.92145 1.24917 0.96404 0.95543 0.97395 1.69871 1.00069 1.48868 1.34646 0.86594 0.77076 0.79085 0.84838 1.20257 1.21401 1.20383 1.22184 0.95091 0.96308 0.93220 0.94228 1.21787 1.02573 0.94959 1.00596 1.22643 0.93405 0.83424 1.00986 1.87862 1.76807 1.26605 1.39516 0.93206 0.92210 0.93050 0.90613 0.91503 0.89347 0.94704 0.97470 0.95146 0.89361 0.92959 0.93362 0.91352 0.92131 0.89685 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.81 37.16 0.36 -1.41 16 2 C -0.12 -1.62 5.65 -26.73 -0.15 -1.77 16 3 C 0.09 1.53 2.80 -26.68 -0.07 1.46 16 4 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 5 C 0.03 0.67 4.10 -3.71 -0.02 0.66 16 6 N -0.52 -11.34 4.48 -219.79 -0.98 -12.32 16 7 C 0.21 5.16 2.09 -68.86 -0.14 5.02 16 8 H 0.05 1.29 5.76 -51.93 -0.30 0.99 16 9 C -0.17 -4.21 8.21 37.16 0.30 -3.90 16 10 C -0.50 -13.56 7.94 -34.44 -0.27 -13.83 16 11 H 0.06 1.65 7.14 -52.49 -0.37 1.27 16 12 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 13 N -0.90 -25.36 11.32 55.43 0.63 -24.74 16 14 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 C 0.04 0.77 2.33 -67.60 -0.16 0.61 16 19 H 0.04 0.79 6.73 -51.93 -0.35 0.44 16 20 C -0.14 -2.43 8.92 37.16 0.33 -2.10 16 21 C 0.07 1.18 6.29 37.21 0.23 1.41 16 22 O -0.39 -6.75 10.02 -35.23 -0.35 -7.11 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.76 7.83 -51.93 -0.41 0.35 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.09 1.87 6.83 -51.93 -0.35 1.52 16 29 H 0.03 0.73 6.36 -51.93 -0.33 0.40 16 30 H 0.01 0.15 6.74 -51.93 -0.35 -0.20 16 31 H 0.03 0.72 6.38 -51.93 -0.33 0.39 16 32 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.31 6.17 -51.93 -0.32 0.99 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 287.70 15.07 4.34 4.34 Total: -1.00 -28.20 287.70 -7.44 -35.64 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.37 Total: 0.28 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 0.32 Total: -12.35 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.36 Total: -37.06 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.35 Total: -7.11 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.20 -7.44 -35.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403930004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.639 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds