Wall clock time and date at job start Mon Mar 30 2020 03:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47311 * 2 1 4 4 H 1.09009 * 109.50500 * 305.08705 * 3 2 1 5 5 C 1.53098 * 109.50809 * 184.99770 * 3 2 1 6 6 N 1.47016 * 109.25650 * 183.17122 * 5 3 2 7 7 C 1.46904 * 110.99833 * 182.39270 * 6 5 3 8 8 H 1.09001 * 109.47093 * 186.36589 * 7 6 5 9 9 C 1.52999 * 109.46973 * 306.36846 * 7 6 5 10 10 C 1.50708 * 109.46990 * 66.36532 * 7 6 5 11 11 H 1.08000 * 119.99863 * 0.02562 * 10 7 6 12 12 C 1.37871 * 119.99708 * 180.02562 * 10 7 6 13 13 N 1.31516 * 120.00513 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 119.99761 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47206 * 59.99813 * 14 12 10 16 16 H 1.48500 * 109.47057 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46924 * 299.99397 * 14 12 10 18 18 C 1.47015 * 110.75267 * 58.61888 * 6 5 3 19 19 H 1.08995 * 109.50726 * 61.31950 * 18 6 5 20 20 C 1.52998 * 109.50493 * 181.44603 * 18 6 5 21 21 C 1.53095 * 109.25739 * 301.37969 * 18 6 5 22 22 O 1.43015 * 109.54407 * 65.15010 * 3 2 1 23 23 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47224 * 300.00155 * 1 2 3 25 25 H 1.09001 * 109.46525 * 60.00121 * 1 2 3 26 26 H 1.08998 * 109.47224 * 239.99845 * 2 1 3 27 27 H 1.09001 * 109.46525 * 119.99879 * 2 1 3 28 28 H 1.09000 * 109.50481 * 63.24095 * 5 3 2 29 29 H 1.08995 * 109.54381 * 303.12925 * 5 3 2 30 30 H 1.08996 * 109.47069 * 299.99599 * 9 7 6 31 31 H 1.09001 * 109.47421 * 59.99944 * 9 7 6 32 32 H 1.09004 * 109.47050 * 179.97438 * 9 7 6 33 33 H 0.96995 * 120.00003 * 180.02562 * 13 12 10 34 34 H 1.08997 * 109.47244 * 179.78405 * 20 18 6 35 35 H 1.09003 * 109.47157 * 299.78244 * 20 18 6 36 36 H 1.08998 * 109.47100 * 59.78181 * 20 18 6 37 37 H 1.09002 * 109.50646 * 176.78576 * 21 18 6 38 38 H 1.09003 * 109.50955 * 296.87129 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6045 1.9825 -0.8408 5 6 3.5659 1.4452 -0.1257 6 7 4.0562 2.8290 -0.0487 7 6 5.5140 2.8814 -0.2223 8 1 5.8642 3.8990 -0.0490 9 6 6.1810 1.9352 0.7781 10 6 5.8683 2.4602 -1.6252 11 1 5.0885 2.1818 -2.3187 12 6 7.1879 2.4301 -2.0234 13 7 8.1375 2.7695 -1.1792 14 14 7.6271 1.9087 -3.7626 15 1 6.9803 2.8278 -4.7332 16 1 9.1007 1.9615 -3.9380 17 1 7.1493 0.5227 -3.9993 18 6 3.6538 3.4545 1.2194 19 1 4.0884 2.9014 2.0520 20 6 4.1470 4.9024 1.2540 21 6 2.1272 3.4316 1.3317 22 8 1.6656 2.0823 1.2230 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8530 1.0101 -1.0830 29 1 3.9996 0.8597 0.6849 30 1 5.9248 2.2398 1.7927 31 1 5.8308 0.9176 0.6048 32 1 7.2627 1.9737 0.6490 33 1 9.0659 2.7487 -1.4595 34 1 3.8451 5.3667 2.1928 35 1 5.2340 4.9180 1.1741 36 1 3.7134 5.4539 0.4199 37 1 1.8269 3.8425 2.2956 38 1 1.6942 4.0301 0.5301 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403930004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:27 Heat of formation + Delta-G solvation = -68.218264 kcal Electronic energy + Delta-G solvation = -17112.459335 eV Core-core repulsion = 14567.931962 eV Total energy + Delta-G solvation = -2544.527373 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.89485 -37.70913 -35.29619 -34.56848 -32.52810 -30.80319 -27.97276 -27.33330 -26.94502 -24.04313 -23.05887 -21.87733 -20.21815 -18.36917 -17.48331 -17.30051 -16.49639 -16.04762 -15.57000 -15.47263 -14.79666 -14.70601 -14.46955 -13.95590 -13.76611 -13.19581 -13.14406 -12.91606 -12.83183 -12.61233 -12.44485 -12.37298 -12.29241 -12.02268 -11.85924 -11.83281 -11.72146 -11.14156 -10.88386 -10.50614 -10.29143 -8.91894 -8.11258 -6.21869 1.42063 1.43327 1.50895 2.41874 2.86294 3.16858 3.21655 3.87180 4.01871 4.12741 4.20795 4.24194 4.37463 4.45917 4.62642 4.68094 4.72041 4.77947 4.83558 4.84061 4.90804 4.97927 5.04467 5.11696 5.13259 5.21426 5.26079 5.36364 5.47694 5.52421 5.68000 5.76541 6.18949 6.28212 6.44829 6.70555 6.90243 7.46923 8.94703 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.008857 C = 0.007298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.800785 B = 3160.733501 C = 3835.772020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C 0.097 3.903 4 H 0.059 0.941 5 C 0.037 3.963 6 N -0.534 5.534 7 C 0.212 3.788 8 H 0.024 0.976 9 C -0.156 4.156 10 C -0.514 4.514 11 H 0.054 0.946 12 C 0.012 3.988 13 N -0.921 5.921 14 Si 0.958 3.042 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.037 3.963 19 H 0.026 0.974 20 C -0.135 4.135 21 C 0.076 3.924 22 O -0.392 6.392 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.022 0.978 30 H 0.018 0.982 31 H 0.027 0.973 32 H 0.062 0.938 33 H 0.261 0.739 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.118 0.882 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.074 -1.613 3.617 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C 0.039 3.961 4 H 0.077 0.923 5 C -0.092 4.092 6 N -0.258 5.258 7 C 0.105 3.895 8 H 0.042 0.958 9 C -0.216 4.216 10 C -0.553 4.553 11 H 0.073 0.927 12 C -0.187 4.187 13 N -0.561 5.561 14 Si 0.783 3.217 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.072 4.072 19 H 0.044 0.956 20 C -0.192 4.192 21 C -0.001 4.001 22 O -0.311 6.311 23 H 0.088 0.912 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.135 0.865 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.208 -1.406 3.382 12.745 hybrid contribution 1.517 -0.505 -0.346 1.635 sum -10.691 -1.911 3.036 11.277 Atomic orbital electron populations 1.21644 0.93772 1.02273 1.01999 1.21535 0.97749 0.92963 1.02891 1.22273 0.92174 0.94896 0.86717 0.92270 1.22618 0.95393 0.90394 1.00774 1.62550 1.14670 1.16670 1.31940 1.19153 0.81983 0.94568 0.93792 0.95818 1.22192 1.03637 0.99081 0.96659 1.21330 0.91960 1.44550 0.97455 0.92748 1.25671 0.96337 0.95556 1.01091 1.69999 1.00255 1.49579 1.36291 0.85619 0.76814 0.78900 0.80341 1.19790 1.21039 1.19684 1.22351 0.97127 0.96576 0.91117 0.95622 1.21729 1.00621 0.94329 1.02566 1.22755 0.91096 0.83220 1.03052 1.87874 1.76544 1.27166 1.39548 0.91229 0.92764 0.92534 0.89823 0.91770 0.91102 0.96011 0.96289 0.95391 0.91915 0.92979 0.89784 0.94169 0.92087 0.86455 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.81 71.98 0.71 -2.31 16 2 C -0.11 -2.99 5.65 30.59 0.17 -2.82 16 3 C 0.10 3.17 2.80 30.63 0.09 3.25 16 4 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 5 C 0.04 1.47 4.10 86.31 0.35 1.83 16 6 N -0.53 -23.12 4.48 -849.28 -3.80 -26.93 16 7 C 0.21 10.81 2.09 44.17 0.09 10.90 16 8 H 0.02 1.33 5.76 -2.39 -0.01 1.32 16 9 C -0.16 -7.85 8.21 71.98 0.59 -7.26 16 10 C -0.51 -28.42 7.94 25.60 0.20 -28.22 16 11 H 0.05 3.00 7.14 -2.91 -0.02 2.98 16 12 C 0.01 0.66 5.30 84.65 0.45 1.10 16 13 N -0.92 -53.15 11.32 21.45 0.24 -52.91 16 14 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 C 0.04 1.36 2.33 44.92 0.10 1.46 16 19 H 0.03 1.01 6.73 -2.39 -0.02 1.00 16 20 C -0.14 -4.50 8.92 71.98 0.64 -3.86 16 21 C 0.08 2.27 6.29 72.01 0.45 2.72 16 22 O -0.39 -12.77 10.02 -148.98 -1.49 -14.26 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.05 1.23 7.83 -2.39 -0.02 1.22 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 3.04 6.83 -2.39 -0.02 3.03 16 29 H 0.02 0.92 6.36 -2.39 -0.02 0.90 16 30 H 0.02 0.86 6.74 -2.39 -0.02 0.84 16 31 H 0.03 1.36 6.38 -2.39 -0.02 1.34 16 32 H 0.06 3.47 6.07 -2.38 -0.01 3.45 16 33 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.04 1.55 6.17 -2.39 -0.01 1.54 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -60.39 287.70 1.84 -58.55 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.01 Total: 12.92 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 3.85 Total: -23.19 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -3.56 Total: -79.84 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -1.49 Total: -14.26 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -60.39 1.84 -58.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403930004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.673 kcal (2) G-P(sol) polarization free energy of solvation -60.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds