Wall clock time and date at job start Mon Mar 30 2020 03:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47381 * 2 1 4 4 H 1.08994 * 109.54036 * 305.10902 * 3 2 1 5 5 C 1.53093 * 109.50552 * 184.99638 * 3 2 1 6 6 N 1.47020 * 109.25569 * 183.21491 * 5 3 2 7 7 C 1.46895 * 111.00226 * 182.39312 * 6 5 3 8 8 H 1.08998 * 109.47509 * 296.05405 * 7 6 5 9 9 C 1.52996 * 109.47640 * 176.05019 * 7 6 5 10 10 C 1.50704 * 109.46989 * 56.04938 * 7 6 5 11 11 H 1.08004 * 119.99870 * 5.37929 * 10 7 6 12 12 C 1.37872 * 120.00015 * 185.37782 * 10 7 6 13 13 N 1.31524 * 119.99894 * 187.33818 * 12 10 7 14 14 Si 1.86795 * 120.00365 * 7.34138 * 12 10 7 15 15 H 1.48497 * 109.47286 * 270.00044 * 14 12 10 16 16 H 1.48498 * 109.47333 * 149.99635 * 14 12 10 17 17 H 1.48502 * 109.46925 * 29.99841 * 14 12 10 18 18 C 1.47020 * 110.74676 * 58.62017 * 6 5 3 19 19 H 1.09001 * 109.50207 * 181.44732 * 18 6 5 20 20 C 1.52996 * 109.50669 * 61.32226 * 18 6 5 21 21 C 1.53097 * 109.26057 * 301.38199 * 18 6 5 22 22 O 1.43015 * 109.25864 * 56.84886 * 21 18 6 23 23 H 1.08999 * 109.47153 * 59.99888 * 1 2 3 24 24 H 1.09002 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46974 * 299.99767 * 1 2 3 26 26 H 1.08998 * 109.46974 * 240.00233 * 2 1 3 27 27 H 1.09004 * 109.47091 * 120.00598 * 2 1 3 28 28 H 1.08997 * 109.50552 * 63.28770 * 5 3 2 29 29 H 1.08993 * 109.54980 * 303.17612 * 5 3 2 30 30 H 1.08999 * 109.47041 * 65.89094 * 9 7 6 31 31 H 1.08993 * 109.47434 * 185.89757 * 9 7 6 32 32 H 1.09006 * 109.46743 * 305.90297 * 9 7 6 33 33 H 0.96994 * 119.99451 * 355.54339 * 13 12 10 34 34 H 1.09000 * 109.47837 * 59.99526 * 20 18 6 35 35 H 1.09004 * 109.47098 * 179.97438 * 20 18 6 36 36 H 1.09008 * 109.47235 * 299.99332 * 20 18 6 37 37 H 1.08998 * 109.50277 * 296.91905 * 21 18 6 38 38 H 1.08998 * 109.53892 * 176.80722 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9831 -0.8403 5 6 3.5658 1.4452 -0.1257 6 7 4.0563 2.8289 -0.0476 7 6 5.5140 2.8814 -0.2211 8 1 5.9971 2.3544 0.6017 9 6 5.9742 4.3404 -0.2324 10 6 5.8885 2.2264 -1.5257 11 1 5.1167 1.8905 -2.2024 12 6 7.2164 2.0560 -1.8553 13 7 7.5462 1.6185 -3.0510 14 14 8.5470 2.4463 -0.6038 15 1 8.9527 3.8683 -0.7399 16 1 9.7227 1.5711 -0.8420 17 1 8.0232 2.2099 0.7655 18 6 3.6539 3.4534 1.2211 19 1 4.0053 4.4848 1.2466 20 6 4.2638 2.6759 2.3892 21 6 2.1272 3.4305 1.3333 22 8 1.6663 2.0810 1.2240 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8528 1.0108 -1.0833 29 1 3.9995 0.8590 0.6844 30 1 5.7981 4.7846 0.7473 31 1 7.0381 4.3841 -0.4653 32 1 5.4140 4.8922 -0.9874 33 1 6.8552 1.3544 -3.6783 34 1 5.3506 2.6893 2.3066 35 1 3.9655 3.1396 3.3295 36 1 3.9102 1.6451 2.3637 37 1 1.6944 4.0290 0.5318 38 1 1.8264 3.8409 2.2973 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403930005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:29 Heat of formation + Delta-G solvation = -49.689439 kcal Electronic energy + Delta-G solvation = -17236.406985 eV Core-core repulsion = 14692.683082 eV Total energy + Delta-G solvation = -2543.723902 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64211 -36.17025 -33.89705 -32.78790 -30.71990 -30.05018 -26.84932 -25.67632 -24.89562 -22.89468 -21.48829 -19.99265 -18.40415 -17.48620 -16.17719 -16.01726 -14.85015 -14.53037 -14.40053 -13.73334 -13.51736 -13.34533 -12.93498 -12.57633 -12.17078 -12.09497 -11.78683 -11.60219 -11.31822 -11.18421 -10.99930 -10.84783 -10.70626 -10.45910 -10.34367 -10.13656 -9.82418 -9.67936 -9.02962 -8.66945 -8.44305 -7.33918 -6.44718 -4.07509 3.34323 3.40498 3.55319 4.09504 4.45518 4.61091 5.13114 5.24500 5.29032 5.31970 5.41298 5.48797 5.61250 5.70232 5.83189 5.84642 5.95258 6.04186 6.09155 6.15224 6.20587 6.27587 6.32023 6.38933 6.43557 6.49919 6.57640 6.73600 6.75971 6.89125 7.31217 7.55663 7.70288 7.95904 8.28050 8.42782 8.94788 9.61350 10.96271 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.009100 C = 0.007773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.826786 B = 3076.038725 C = 3601.422229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.092 3.908 4 H 0.060 0.940 5 C 0.035 3.965 6 N -0.517 5.517 7 C 0.179 3.821 8 H 0.004 0.996 9 C -0.143 4.143 10 C -0.582 4.582 11 H 0.064 0.936 12 C 0.027 3.973 13 N -0.913 5.913 14 Si 1.053 2.947 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.282 1.282 18 C 0.036 3.964 19 H 0.086 0.914 20 C -0.179 4.179 21 C 0.073 3.927 22 O -0.385 6.385 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.033 0.967 30 H 0.024 0.976 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.267 0.733 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.011 0.943 8.834 13.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C 0.034 3.966 4 H 0.078 0.922 5 C -0.093 4.093 6 N -0.242 5.242 7 C 0.072 3.928 8 H 0.021 0.979 9 C -0.201 4.201 10 C -0.621 4.621 11 H 0.082 0.918 12 C -0.178 4.178 13 N -0.548 5.548 14 Si 0.883 3.117 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.208 1.208 18 C -0.074 4.074 19 H 0.104 0.896 20 C -0.238 4.238 21 C -0.004 4.004 22 O -0.304 6.304 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.112 0.888 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.677 1.186 8.780 12.401 hybrid contribution -1.004 -0.273 0.203 1.060 sum -9.681 0.913 8.983 13.238 Atomic orbital electron populations 1.21690 0.95587 1.00997 1.02024 1.21505 0.96216 0.94922 1.02652 1.22273 0.94507 0.93149 0.86671 0.92222 1.22618 0.93095 0.90902 1.02709 1.62442 1.15866 1.16499 1.29350 1.19776 0.82663 0.92980 0.97363 0.97885 1.22138 1.00500 0.98869 0.98606 1.22041 0.94216 1.42176 1.03650 0.91824 1.25690 0.98630 0.94638 0.98810 1.70816 1.36975 1.41909 1.05133 0.83865 0.75851 0.76523 0.75437 1.21017 1.21612 1.20789 1.22396 0.95402 0.99771 0.89820 0.89567 1.22338 1.01469 1.01611 0.98380 1.22578 0.93077 0.83725 1.01009 1.87868 1.76827 1.26396 1.39325 0.93049 0.93149 0.92208 0.90572 0.91483 0.88826 0.94839 0.95726 0.93319 0.92598 0.92279 0.92352 0.93128 0.92112 0.93023 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.81 37.15 0.36 -1.40 16 2 C -0.12 -1.62 5.64 -26.73 -0.15 -1.77 16 3 C 0.09 1.53 2.80 -26.68 -0.07 1.46 16 4 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 5 C 0.04 0.70 4.24 -3.71 -0.02 0.68 16 6 N -0.52 -10.85 4.54 -219.80 -1.00 -11.85 16 7 C 0.18 4.26 1.31 -68.87 -0.09 4.17 16 8 H 0.00 0.09 4.80 -51.93 -0.25 -0.16 16 9 C -0.14 -3.15 8.39 37.16 0.31 -2.84 16 10 C -0.58 -16.12 8.11 -34.44 -0.28 -16.40 16 11 H 0.06 1.90 6.86 -52.48 -0.36 1.54 16 12 C 0.03 0.76 5.42 -17.82 -0.10 0.67 16 13 N -0.91 -27.96 13.70 55.43 0.76 -27.20 16 14 Si 1.05 25.58 25.43 -169.99 -4.32 21.26 16 15 H -0.28 -6.54 6.75 56.52 0.38 -6.16 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.45 6.36 56.52 0.36 -6.09 16 18 C 0.04 0.62 2.67 -67.60 -0.18 0.44 16 19 H 0.09 1.46 6.33 -51.93 -0.33 1.13 16 20 C -0.18 -3.01 8.39 37.16 0.31 -2.70 16 21 C 0.07 1.12 6.41 37.21 0.24 1.36 16 22 O -0.38 -6.38 9.47 -35.23 -0.33 -6.71 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.75 7.83 -51.93 -0.41 0.34 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.09 2.07 6.26 -51.93 -0.33 1.74 16 29 H 0.03 0.69 6.39 -51.93 -0.33 0.35 16 30 H 0.02 0.46 6.69 -51.93 -0.35 0.11 16 31 H 0.05 1.10 4.54 -51.93 -0.24 0.87 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.27 8.15 8.72 -40.82 -0.36 7.79 16 34 H 0.06 1.06 6.46 -51.93 -0.34 0.73 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.07 6.07 -51.92 -0.32 0.75 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 280.75 15.07 4.23 4.23 Total: -1.00 -29.54 280.75 -6.58 -36.12 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.25 Total: 0.48 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 0.34 Total: -16.33 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.24 Total: -39.05 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.33 Total: -6.71 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.32 Total: 21.26 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.54 -6.58 -36.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403930005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.568 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds