Wall clock time and date at job start Mon Mar 30 2020 03:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47381 * 2 1 4 4 H 1.08994 * 109.54036 * 305.10902 * 3 2 1 5 5 C 1.53093 * 109.50552 * 184.99638 * 3 2 1 6 6 N 1.47020 * 109.25569 * 183.21491 * 5 3 2 7 7 C 1.46895 * 111.00226 * 182.39312 * 6 5 3 8 8 H 1.08998 * 109.47509 * 296.05405 * 7 6 5 9 9 C 1.52996 * 109.47640 * 176.05019 * 7 6 5 10 10 C 1.50704 * 109.46989 * 56.04938 * 7 6 5 11 11 H 1.08004 * 119.99870 * 5.37929 * 10 7 6 12 12 C 1.37872 * 120.00015 * 185.37782 * 10 7 6 13 13 N 1.31524 * 119.99894 * 187.33818 * 12 10 7 14 14 Si 1.86795 * 120.00365 * 7.34138 * 12 10 7 15 15 H 1.48497 * 109.47286 * 270.00044 * 14 12 10 16 16 H 1.48498 * 109.47333 * 149.99635 * 14 12 10 17 17 H 1.48502 * 109.46925 * 29.99841 * 14 12 10 18 18 C 1.47020 * 110.74676 * 58.62017 * 6 5 3 19 19 H 1.09001 * 109.50207 * 181.44732 * 18 6 5 20 20 C 1.52996 * 109.50669 * 61.32226 * 18 6 5 21 21 C 1.53097 * 109.26057 * 301.38199 * 18 6 5 22 22 O 1.43015 * 109.25864 * 56.84886 * 21 18 6 23 23 H 1.08999 * 109.47153 * 59.99888 * 1 2 3 24 24 H 1.09002 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46974 * 299.99767 * 1 2 3 26 26 H 1.08998 * 109.46974 * 240.00233 * 2 1 3 27 27 H 1.09004 * 109.47091 * 120.00598 * 2 1 3 28 28 H 1.08997 * 109.50552 * 63.28770 * 5 3 2 29 29 H 1.08993 * 109.54980 * 303.17612 * 5 3 2 30 30 H 1.08999 * 109.47041 * 65.89094 * 9 7 6 31 31 H 1.08993 * 109.47434 * 185.89757 * 9 7 6 32 32 H 1.09006 * 109.46743 * 305.90297 * 9 7 6 33 33 H 0.96994 * 119.99451 * 355.54339 * 13 12 10 34 34 H 1.09000 * 109.47837 * 59.99526 * 20 18 6 35 35 H 1.09004 * 109.47098 * 179.97438 * 20 18 6 36 36 H 1.09008 * 109.47235 * 299.99332 * 20 18 6 37 37 H 1.08998 * 109.50277 * 296.91905 * 21 18 6 38 38 H 1.08998 * 109.53892 * 176.80722 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9831 -0.8403 5 6 3.5658 1.4452 -0.1257 6 7 4.0563 2.8289 -0.0476 7 6 5.5140 2.8814 -0.2211 8 1 5.9971 2.3544 0.6017 9 6 5.9742 4.3404 -0.2324 10 6 5.8885 2.2264 -1.5257 11 1 5.1167 1.8905 -2.2024 12 6 7.2164 2.0560 -1.8553 13 7 7.5462 1.6185 -3.0510 14 14 8.5470 2.4463 -0.6038 15 1 8.9527 3.8683 -0.7399 16 1 9.7227 1.5711 -0.8420 17 1 8.0232 2.2099 0.7655 18 6 3.6539 3.4534 1.2211 19 1 4.0053 4.4848 1.2466 20 6 4.2638 2.6759 2.3892 21 6 2.1272 3.4305 1.3333 22 8 1.6663 2.0810 1.2240 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8528 1.0108 -1.0833 29 1 3.9995 0.8590 0.6844 30 1 5.7981 4.7846 0.7473 31 1 7.0381 4.3841 -0.4653 32 1 5.4140 4.8922 -0.9874 33 1 6.8552 1.3544 -3.6783 34 1 5.3506 2.6893 2.3066 35 1 3.9655 3.1396 3.3295 36 1 3.9102 1.6451 2.3637 37 1 1.6944 4.0290 0.5318 38 1 1.8264 3.8409 2.2973 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403930005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:29 Heat of formation + Delta-G solvation = -70.517983 kcal Electronic energy + Delta-G solvation = -17237.310178 eV Core-core repulsion = 14692.683082 eV Total energy + Delta-G solvation = -2544.627096 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.09122 -37.74003 -35.27623 -34.65862 -32.39417 -31.57701 -28.21176 -27.04887 -26.88292 -24.32463 -22.94818 -21.58205 -20.03260 -19.51852 -17.70236 -17.38170 -16.33437 -16.19060 -15.77145 -15.36916 -15.01121 -14.71320 -14.49230 -14.09144 -13.80680 -13.54156 -13.40024 -13.02604 -12.93176 -12.71911 -12.54159 -12.26169 -12.06292 -11.91962 -11.84498 -11.77525 -11.62383 -11.15217 -10.78139 -10.64442 -10.39605 -9.01429 -8.74038 -6.36713 1.38830 1.48626 1.64750 2.43982 2.81724 3.05347 3.10890 3.84641 3.97367 4.06070 4.12601 4.17063 4.34622 4.38681 4.52921 4.59217 4.62203 4.71123 4.73207 4.76612 4.80793 4.82230 4.93614 4.94829 5.07705 5.09445 5.16171 5.18954 5.32516 5.42805 5.53143 5.80386 6.01242 6.17021 6.25783 6.54613 6.70223 7.41445 8.66093 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031673 B = 0.009100 C = 0.007773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.826786 B = 3076.038725 C = 3601.422229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.102 3.898 4 H 0.053 0.947 5 C 0.040 3.960 6 N -0.532 5.532 7 C 0.182 3.818 8 H -0.002 1.002 9 C -0.139 4.139 10 C -0.578 4.578 11 H 0.025 0.975 12 C -0.026 4.026 13 N -0.946 5.946 14 Si 1.089 2.911 15 H -0.260 1.260 16 H -0.292 1.292 17 H -0.259 1.259 18 C 0.031 3.969 19 H 0.098 0.902 20 C -0.173 4.173 21 C 0.073 3.927 22 O -0.385 6.385 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.025 0.975 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.251 0.749 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.936 2.117 11.403 15.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C 0.044 3.956 4 H 0.071 0.929 5 C -0.088 4.088 6 N -0.257 5.257 7 C 0.074 3.926 8 H 0.015 0.985 9 C -0.196 4.196 10 C -0.617 4.617 11 H 0.043 0.957 12 C -0.223 4.223 13 N -0.584 5.584 14 Si 0.912 3.088 15 H -0.185 1.185 16 H -0.219 1.219 17 H -0.184 1.184 18 C -0.078 4.078 19 H 0.116 0.884 20 C -0.232 4.232 21 C -0.004 4.004 22 O -0.304 6.304 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.640 2.372 11.359 15.086 hybrid contribution -0.811 -0.651 -0.617 1.209 sum -10.451 1.722 10.742 15.086 Atomic orbital electron populations 1.21634 0.93580 1.02312 1.02049 1.21522 0.97900 0.93089 1.02681 1.22164 0.91857 0.94804 0.86824 0.92881 1.22529 0.95591 0.90367 1.00332 1.62366 1.13978 1.17038 1.32268 1.19607 0.84724 0.93742 0.94539 0.98469 1.22027 0.99817 0.97299 1.00499 1.22235 0.93326 1.41368 1.04737 0.95706 1.27078 1.01473 0.94161 0.99543 1.70943 1.36455 1.44653 1.06317 0.83435 0.73413 0.77639 0.74287 1.18519 1.21858 1.18351 1.22593 0.97131 0.99920 0.88142 0.88431 1.22269 1.00242 1.01041 0.99602 1.22763 0.91312 0.83218 1.03115 1.87880 1.76576 1.27134 1.38804 0.92796 0.91245 0.92342 0.90658 0.91425 0.92394 0.95698 0.92113 0.93979 0.93256 0.94015 0.93946 0.89843 0.93414 0.92818 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.81 71.98 0.71 -2.36 16 2 C -0.11 -3.11 5.64 30.59 0.17 -2.94 16 3 C 0.10 3.33 2.80 30.63 0.09 3.41 16 4 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 5 C 0.04 1.63 4.24 86.31 0.37 2.00 16 6 N -0.53 -22.02 4.54 -849.30 -3.85 -25.87 16 7 C 0.18 8.53 1.31 44.17 0.06 8.59 16 8 H 0.00 -0.10 4.80 -2.39 -0.01 -0.11 16 9 C -0.14 -5.81 8.39 71.98 0.60 -5.20 16 10 C -0.58 -32.98 8.11 25.60 0.21 -32.77 16 11 H 0.02 1.57 6.86 -2.91 -0.02 1.55 16 12 C -0.03 -1.49 5.42 84.65 0.46 -1.04 16 13 N -0.95 -60.02 13.70 21.45 0.29 -59.73 16 14 Si 1.09 50.98 25.43 68.60 1.74 52.72 16 15 H -0.26 -11.16 6.75 99.48 0.67 -10.48 16 16 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 17 H -0.26 -11.06 6.36 99.48 0.63 -10.42 16 18 C 0.03 0.99 2.67 44.92 0.12 1.11 16 19 H 0.10 2.93 6.33 -2.39 -0.02 2.92 16 20 C -0.17 -5.30 8.39 71.98 0.60 -4.70 16 21 C 0.07 1.99 6.41 72.01 0.46 2.45 16 22 O -0.38 -11.82 9.47 -148.98 -1.41 -13.23 16 23 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.32 7.83 -2.39 -0.02 1.30 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.06 2.72 6.26 -2.39 -0.01 2.70 16 29 H 0.02 1.03 6.39 -2.39 -0.02 1.02 16 30 H 0.06 2.09 6.69 -2.39 -0.02 2.07 16 31 H 0.04 1.80 4.54 -2.39 -0.01 1.79 16 32 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.25 16.18 8.72 -92.71 -0.81 15.37 16 34 H 0.04 1.43 6.46 -2.39 -0.02 1.41 16 35 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.05 1.58 6.07 -2.38 -0.01 1.56 16 37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -65.33 280.75 1.49 -63.83 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.88 Total: 13.72 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 3.84 Total: -31.45 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -3.56 Total: -85.60 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -1.41 Total: -13.23 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 1.74 Total: 52.72 kcal Total: -65.33 1.49 -63.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403930005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.683 kcal (2) G-P(sol) polarization free energy of solvation -65.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds