Wall clock time and date at job start Mon Mar 30 2020 03:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47181 * 2 1 4 4 H 1.08992 * 109.47234 * 59.28200 * 3 2 1 5 5 C 1.50694 * 109.47114 * 179.28651 * 3 2 1 6 6 H 1.08003 * 119.99930 * 119.99705 * 5 3 2 7 7 C 1.37874 * 120.00342 * 300.00188 * 5 3 2 8 8 N 1.31516 * 119.99679 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00415 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47541 * 89.99327 * 9 7 5 11 11 H 1.48499 * 109.47232 * 209.99698 * 9 7 5 12 12 H 1.48499 * 109.47289 * 329.99639 * 9 7 5 13 13 N 1.46900 * 109.46866 * 299.28484 * 3 2 1 14 14 C 1.46908 * 111.00090 * 85.42559 * 13 3 2 15 15 C 1.52993 * 109.47050 * 77.61146 * 14 13 3 16 16 C 1.53002 * 109.46775 * 184.51444 * 15 14 13 17 17 O 1.42906 * 109.47075 * 180.02562 * 16 15 14 18 18 C 1.46903 * 111.00435 * 321.46866 * 13 3 2 19 19 C 1.52999 * 117.49816 * 262.47424 * 18 13 3 20 20 C 1.52995 * 117.50028 * 193.81201 * 18 13 3 21 21 H 1.08995 * 109.47488 * 69.93175 * 1 2 3 22 22 H 1.09004 * 109.47199 * 189.93309 * 1 2 3 23 23 H 1.09005 * 109.47103 * 309.93398 * 1 2 3 24 24 H 1.09002 * 109.47034 * 239.99989 * 2 1 3 25 25 H 1.08996 * 109.47004 * 120.00142 * 2 1 3 26 26 H 0.97003 * 119.99860 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.47199 * 197.61548 * 14 13 3 28 28 H 1.08998 * 109.46622 * 317.61387 * 14 13 3 29 29 H 1.09000 * 109.47546 * 304.50639 * 15 14 13 30 30 H 1.09000 * 109.47687 * 64.51456 * 15 14 13 31 31 H 1.09006 * 109.47180 * 299.99486 * 16 15 14 32 32 H 1.08992 * 109.47546 * 59.99932 * 16 15 14 33 33 H 0.96700 * 114.00242 * 180.02562 * 17 16 15 34 34 H 1.08999 * 115.54346 * 48.13746 * 18 13 3 35 35 H 1.08999 * 117.50026 * 359.97438 * 19 18 13 36 36 H 1.08995 * 117.49556 * 145.01905 * 19 18 13 37 37 H 1.09001 * 117.49976 * 214.98267 * 20 18 13 38 38 H 1.09002 * 117.49850 * 0.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6662 1.9600 0.8834 5 6 3.5468 1.4425 0.0177 6 1 4.0963 1.9068 -0.7879 7 6 4.2241 0.8498 1.0622 8 7 3.5549 0.2848 2.0434 9 14 6.0919 0.8504 1.0845 10 1 6.5782 2.0659 1.7855 11 1 6.5789 -0.3591 1.7952 12 1 6.6036 0.8450 -0.3095 13 7 1.5645 2.1299 -1.2080 14 6 0.2186 2.6825 -1.0040 15 6 0.3148 3.9686 -0.1809 16 6 -1.0928 4.4831 0.1273 17 8 -1.0031 5.6847 0.8956 18 6 1.5945 1.2326 -2.3708 19 6 2.8036 1.3254 -3.3036 20 6 1.4445 1.8655 -3.7556 21 1 -0.3634 0.3526 -0.9652 22 1 -0.3634 -1.0123 0.1773 23 1 -0.3633 0.6597 0.7880 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 4.0314 -0.1319 2.7784 27 1 -0.2341 2.9028 -1.9708 28 1 -0.3956 1.9558 -0.4723 29 1 0.8393 3.7643 0.7525 30 1 0.8613 4.7226 -0.7473 31 1 -1.6174 4.6875 -0.8061 32 1 -1.6394 3.7293 0.6937 33 1 -1.8599 6.0678 1.1282 34 1 1.1521 0.2484 -2.2165 35 1 3.5766 2.0525 -3.0549 36 1 3.1564 0.4023 -3.7635 37 1 0.9037 1.2976 -4.5126 38 1 1.3239 2.9478 -3.8039 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404319124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:45 Heat of formation + Delta-G solvation = -17.528859 kcal Electronic energy + Delta-G solvation = -16877.431749 eV Core-core repulsion = 14335.102434 eV Total energy + Delta-G solvation = -2542.329315 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.55792 -36.73660 -34.69692 -32.95252 -31.44120 -29.54871 -27.06868 -24.23511 -22.82147 -21.73469 -21.05370 -20.43892 -18.56581 -17.09107 -16.56397 -15.46090 -15.12773 -14.96408 -14.36737 -13.60149 -13.29534 -13.28113 -12.50721 -12.36620 -12.14621 -11.54614 -11.21192 -11.07088 -10.90554 -10.82608 -10.78803 -10.61066 -10.36658 -10.27891 -9.93156 -9.74239 -9.57828 -9.47263 -9.18546 -8.83480 -8.27233 -7.04177 -5.93446 -3.94921 3.35999 3.42241 3.46075 4.29619 4.49489 4.54681 4.98907 5.34265 5.37641 5.48897 5.62407 5.66717 5.77310 5.84801 5.94939 6.09971 6.12132 6.13156 6.20886 6.26423 6.38829 6.41541 6.62172 6.67481 6.79090 6.84434 6.91046 6.99876 7.28773 7.47699 7.78118 7.78771 7.95109 8.27815 8.44841 8.66070 9.11505 9.69102 11.13492 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.009511 C = 0.008074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.321749 B = 2943.159239 C = 3466.896285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.151 4.151 3 C 0.220 3.780 4 H 0.038 0.962 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.503 5.503 14 C 0.044 3.956 15 C -0.113 4.113 16 C 0.078 3.922 17 O -0.574 6.574 18 C 0.029 3.971 19 C -0.155 4.155 20 C -0.194 4.194 21 H 0.042 0.958 22 H 0.033 0.967 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.097 0.903 26 H 0.258 0.742 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.372 0.628 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.638 3.079 -6.092 11.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.191 4.191 3 C 0.114 3.886 4 H 0.056 0.944 5 C -0.525 4.525 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.227 5.227 14 C -0.084 4.084 15 C -0.151 4.151 16 C 0.000 4.000 17 O -0.378 6.378 18 C -0.080 4.080 19 C -0.192 4.192 20 C -0.231 4.231 21 H 0.060 0.940 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.115 0.885 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.218 0.782 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.630 3.253 -6.081 10.285 hybrid contribution -0.144 -0.692 0.336 0.782 sum -7.774 2.562 -5.745 10.000 Atomic orbital electron populations 1.22164 0.99856 0.99428 0.99733 1.22220 0.91214 1.02475 1.03164 1.19338 0.95003 0.88258 0.86004 0.94376 1.21139 0.90581 1.34442 1.06324 0.91947 1.24921 0.98185 0.95724 0.95677 1.69875 1.34906 1.38478 1.10552 0.86564 0.85998 0.77239 0.77982 1.20857 1.21539 1.20001 1.62051 1.20482 1.35156 1.05008 1.22243 0.92213 0.95466 0.98517 1.21464 0.94497 0.97367 1.01782 1.22204 0.98621 0.85726 0.93427 1.86535 1.34217 1.41925 1.75164 1.22307 1.02332 0.96050 0.87278 1.22842 0.91741 1.02098 1.02536 1.23013 1.01783 1.00472 0.97856 0.93961 0.94830 0.93519 0.93873 0.88491 0.93181 0.92662 0.93225 0.90544 0.91353 0.94287 0.94047 0.78221 0.89618 0.88387 0.89974 0.90069 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 7.96 37.16 0.30 -2.68 16 2 C -0.15 -3.51 4.66 -26.73 -0.12 -3.63 16 3 C 0.22 5.37 1.84 -68.87 -0.13 5.24 16 4 H 0.04 1.04 6.56 -51.93 -0.34 0.70 16 5 C -0.49 -13.23 8.62 -34.44 -0.30 -13.52 16 6 H 0.06 1.73 7.50 -52.48 -0.39 1.34 16 7 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 8 N -0.90 -25.51 11.32 55.43 0.63 -24.88 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.50 -10.53 4.37 -220.11 -0.96 -11.49 16 14 C 0.04 0.78 4.26 -3.82 -0.02 0.77 16 15 C -0.11 -2.01 5.75 -26.73 -0.15 -2.17 16 16 C 0.08 1.12 7.05 37.16 0.26 1.38 16 17 O -0.57 -8.30 13.66 -35.23 -0.48 -8.79 16 18 C 0.03 0.56 3.45 -67.71 -0.23 0.32 16 19 C -0.15 -2.79 10.41 -26.69 -0.28 -3.06 16 20 C -0.19 -3.08 9.76 -26.69 -0.26 -3.34 16 21 H 0.04 0.75 5.11 -51.93 -0.27 0.48 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.90 7.32 -51.93 -0.38 0.52 16 24 H 0.04 1.00 6.13 -51.93 -0.32 0.68 16 25 H 0.10 2.55 6.05 -51.93 -0.31 2.24 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.05 0.89 7.37 -51.93 -0.38 0.51 16 28 H 0.05 0.89 3.98 -51.93 -0.21 0.68 16 29 H 0.08 1.59 6.84 -51.93 -0.36 1.23 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.37 3.31 9.12 45.56 0.42 3.73 16 34 H 0.09 1.67 4.93 -51.93 -0.26 1.41 16 35 H 0.10 1.92 7.88 -51.93 -0.41 1.51 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 293.35 15.07 4.42 4.42 Total: -1.00 -29.29 293.35 -7.74 -37.03 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.30 Total: 6.35 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -1.03 Total: -19.27 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.34 Total: -36.37 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.48 Total: -8.79 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.29 -7.74 -37.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404319124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.500 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds