Wall clock time and date at job start Mon Mar 30 2020 03:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47181 * 2 1 4 4 H 1.08992 * 109.47234 * 59.28200 * 3 2 1 5 5 C 1.50694 * 109.47114 * 179.28651 * 3 2 1 6 6 H 1.08003 * 119.99930 * 119.99705 * 5 3 2 7 7 C 1.37874 * 120.00342 * 300.00188 * 5 3 2 8 8 N 1.31516 * 119.99679 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00415 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47541 * 89.99327 * 9 7 5 11 11 H 1.48499 * 109.47232 * 209.99698 * 9 7 5 12 12 H 1.48499 * 109.47289 * 329.99639 * 9 7 5 13 13 N 1.46900 * 109.46866 * 299.28484 * 3 2 1 14 14 C 1.46908 * 111.00090 * 85.42559 * 13 3 2 15 15 C 1.52993 * 109.47050 * 77.61146 * 14 13 3 16 16 C 1.53002 * 109.46775 * 184.51444 * 15 14 13 17 17 O 1.42906 * 109.47075 * 180.02562 * 16 15 14 18 18 C 1.46903 * 111.00435 * 321.46866 * 13 3 2 19 19 C 1.52999 * 117.49816 * 262.47424 * 18 13 3 20 20 C 1.52995 * 117.50028 * 193.81201 * 18 13 3 21 21 H 1.08995 * 109.47488 * 69.93175 * 1 2 3 22 22 H 1.09004 * 109.47199 * 189.93309 * 1 2 3 23 23 H 1.09005 * 109.47103 * 309.93398 * 1 2 3 24 24 H 1.09002 * 109.47034 * 239.99989 * 2 1 3 25 25 H 1.08996 * 109.47004 * 120.00142 * 2 1 3 26 26 H 0.97003 * 119.99860 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.47199 * 197.61548 * 14 13 3 28 28 H 1.08998 * 109.46622 * 317.61387 * 14 13 3 29 29 H 1.09000 * 109.47546 * 304.50639 * 15 14 13 30 30 H 1.09000 * 109.47687 * 64.51456 * 15 14 13 31 31 H 1.09006 * 109.47180 * 299.99486 * 16 15 14 32 32 H 1.08992 * 109.47546 * 59.99932 * 16 15 14 33 33 H 0.96700 * 114.00242 * 180.02562 * 17 16 15 34 34 H 1.08999 * 115.54346 * 48.13746 * 18 13 3 35 35 H 1.08999 * 117.50026 * 359.97438 * 19 18 13 36 36 H 1.08995 * 117.49556 * 145.01905 * 19 18 13 37 37 H 1.09001 * 117.49976 * 214.98267 * 20 18 13 38 38 H 1.09002 * 117.49850 * 0.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6662 1.9600 0.8834 5 6 3.5468 1.4425 0.0177 6 1 4.0963 1.9068 -0.7879 7 6 4.2241 0.8498 1.0622 8 7 3.5549 0.2848 2.0434 9 14 6.0919 0.8504 1.0845 10 1 6.5782 2.0659 1.7855 11 1 6.5789 -0.3591 1.7952 12 1 6.6036 0.8450 -0.3095 13 7 1.5645 2.1299 -1.2080 14 6 0.2186 2.6825 -1.0040 15 6 0.3148 3.9686 -0.1809 16 6 -1.0928 4.4831 0.1273 17 8 -1.0031 5.6847 0.8956 18 6 1.5945 1.2326 -2.3708 19 6 2.8036 1.3254 -3.3036 20 6 1.4445 1.8655 -3.7556 21 1 -0.3634 0.3526 -0.9652 22 1 -0.3634 -1.0123 0.1773 23 1 -0.3633 0.6597 0.7880 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 4.0314 -0.1319 2.7784 27 1 -0.2341 2.9028 -1.9708 28 1 -0.3956 1.9558 -0.4723 29 1 0.8393 3.7643 0.7525 30 1 0.8613 4.7226 -0.7473 31 1 -1.6174 4.6875 -0.8061 32 1 -1.6394 3.7293 0.6937 33 1 -1.8599 6.0678 1.1282 34 1 1.1521 0.2484 -2.2165 35 1 3.5766 2.0525 -3.0549 36 1 3.1564 0.4023 -3.7635 37 1 0.9037 1.2976 -4.5126 38 1 1.3239 2.9478 -3.8039 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404319124.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:45 Heat of formation + Delta-G solvation = -38.326559 kcal Electronic energy + Delta-G solvation = -16878.333605 eV Core-core repulsion = 14335.102434 eV Total energy + Delta-G solvation = -2543.231171 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.13893 -37.88670 -36.25848 -34.71258 -33.19907 -31.10479 -28.91132 -25.80414 -24.53571 -23.10831 -22.64909 -21.86917 -20.22943 -18.54289 -18.17145 -17.20295 -16.53962 -16.37235 -16.22800 -15.12069 -14.88435 -14.74143 -14.01501 -13.98099 -13.69797 -13.14786 -13.03594 -12.70820 -12.67908 -12.54603 -12.22856 -12.13682 -12.05896 -11.87478 -11.67321 -11.28610 -11.05410 -10.88590 -10.81419 -10.59893 -10.36722 -8.67662 -8.04569 -6.12591 1.40662 1.41913 1.51610 2.45073 3.07776 3.13333 3.23536 3.68903 4.07715 4.23386 4.30105 4.35160 4.44910 4.47071 4.49423 4.57362 4.65029 4.68952 4.80667 4.85510 4.89285 4.98195 5.07985 5.19568 5.23923 5.28504 5.41790 5.45829 5.49758 5.63423 5.81297 5.92924 6.37719 6.67078 6.83571 6.97715 7.01074 7.55357 9.00372 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019681 B = 0.009511 C = 0.008074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.321749 B = 2943.159239 C = 3466.896285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.143 4.143 3 C 0.229 3.771 4 H 0.002 0.998 5 C -0.499 4.499 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.516 5.516 14 C 0.047 3.953 15 C -0.110 4.110 16 C 0.085 3.915 17 O -0.598 6.598 18 C 0.005 3.995 19 C -0.169 4.169 20 C -0.154 4.154 21 H 0.063 0.937 22 H 0.049 0.951 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.061 0.939 26 H 0.258 0.742 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.397 0.603 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.014 3.235 -7.813 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.182 4.182 3 C 0.122 3.878 4 H 0.020 0.980 5 C -0.538 4.538 6 H 0.069 0.931 7 C -0.189 4.189 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.208 1.208 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.239 5.239 14 C -0.081 4.081 15 C -0.148 4.148 16 C 0.008 3.992 17 O -0.406 6.406 18 C -0.104 4.104 19 C -0.207 4.207 20 C -0.191 4.191 21 H 0.082 0.918 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.247 0.753 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.030 3.425 -7.811 12.421 hybrid contribution 0.278 -0.684 0.858 1.132 sum -8.752 2.741 -6.953 11.509 Atomic orbital electron populations 1.22015 0.96608 1.00550 1.00765 1.22003 0.94100 1.00986 1.01125 1.18995 0.93515 0.88872 0.86435 0.98008 1.21426 0.92470 1.34023 1.05896 0.93135 1.25615 1.02092 0.95656 0.95529 1.70009 1.36194 1.39116 1.10951 0.85675 0.81422 0.77179 0.78045 1.20788 1.21030 1.19498 1.61909 1.22588 1.35231 1.04221 1.22286 0.90758 0.95160 0.99880 1.21403 0.96595 0.97364 0.99471 1.22090 0.96128 0.85999 0.95031 1.86469 1.36731 1.42040 1.75383 1.22374 1.03847 0.96281 0.87917 1.22856 0.92071 1.02520 1.03266 1.23072 0.99363 1.00931 0.95767 0.91842 0.93168 0.93944 0.94216 0.92048 0.93319 0.89930 0.92893 0.94820 0.92569 0.91251 0.93094 0.75346 0.89802 0.90730 0.88688 0.86785 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.30 7.96 71.98 0.57 -4.73 16 2 C -0.14 -6.69 4.66 30.59 0.14 -6.55 16 3 C 0.23 11.48 1.84 44.17 0.08 11.56 16 4 H 0.00 0.12 6.56 -2.39 -0.02 0.10 16 5 C -0.50 -28.01 8.62 25.60 0.22 -27.79 16 6 H 0.05 2.88 7.50 -2.91 -0.02 2.86 16 7 C 0.01 0.49 5.30 84.65 0.45 0.94 16 8 N -0.92 -53.96 11.32 21.45 0.24 -53.71 16 9 Si 0.95 45.27 29.54 68.60 2.03 47.29 16 10 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 N -0.52 -21.50 4.37 -850.30 -3.72 -25.21 16 14 C 0.05 1.60 4.26 86.30 0.37 1.97 16 15 C -0.11 -3.90 5.75 30.59 0.18 -3.73 16 16 C 0.09 2.27 7.05 71.98 0.51 2.77 16 17 O -0.60 -16.37 13.66 -148.98 -2.04 -18.41 16 18 C 0.00 0.17 3.45 44.91 0.16 0.32 16 19 C -0.17 -5.89 10.41 30.62 0.32 -5.58 16 20 C -0.15 -4.38 9.76 30.62 0.30 -4.08 16 21 H 0.06 2.09 5.11 -2.39 -0.01 2.08 16 22 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.04 1.60 7.32 -2.38 -0.02 1.58 16 24 H 0.04 1.85 6.13 -2.39 -0.01 1.83 16 25 H 0.06 3.33 6.05 -2.39 -0.01 3.31 16 26 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.08 2.39 7.37 -2.39 -0.02 2.37 16 28 H 0.05 1.80 3.98 -2.39 -0.01 1.79 16 29 H 0.03 1.46 6.84 -2.39 -0.02 1.44 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.40 6.16 9.12 -74.06 -0.68 5.49 16 34 H 0.08 3.10 4.93 -2.39 -0.01 3.09 16 35 H 0.07 2.93 7.88 -2.39 -0.02 2.91 16 36 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -65.05 293.35 0.17 -64.88 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.37 Total: 20.05 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 3.29 Total: -34.88 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -3.48 Total: -78.93 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -2.04 Total: -18.41 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -65.05 0.17 -64.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404319124.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.549 kcal (2) G-P(sol) polarization free energy of solvation -65.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds