Wall clock time and date at job start Mon Mar 30 2020 03:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47123 * 2 1 4 4 H 1.09004 * 109.47448 * 54.24233 * 3 2 1 5 5 C 1.50704 * 109.47133 * 294.24668 * 3 2 1 6 6 H 1.08008 * 119.99402 * 275.63567 * 5 3 2 7 7 C 1.37873 * 120.00166 * 95.64103 * 5 3 2 8 8 N 1.31515 * 120.00263 * 4.42134 * 7 5 3 9 9 Si 1.86796 * 119.99780 * 184.42544 * 7 5 3 10 10 H 1.48500 * 109.47284 * 59.99896 * 9 7 5 11 11 H 1.48506 * 109.47173 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47464 * 299.99731 * 9 7 5 13 13 N 1.46896 * 109.47202 * 174.24670 * 3 2 1 14 14 C 1.46907 * 110.99459 * 288.73328 * 13 3 2 15 15 C 1.53003 * 109.47156 * 288.19503 * 14 13 3 16 16 C 1.53001 * 109.46727 * 181.61010 * 15 14 13 17 17 O 1.42901 * 109.46942 * 180.02562 * 16 15 14 18 18 C 1.46894 * 111.00135 * 52.68319 * 13 3 2 19 19 C 1.53006 * 117.51612 * 100.95521 * 18 13 3 20 20 C 1.53001 * 60.00277 * 107.48124 * 19 18 13 21 21 H 1.08994 * 109.47038 * 182.01324 * 1 2 3 22 22 H 1.09007 * 109.47157 * 302.01586 * 1 2 3 23 23 H 1.09006 * 109.47376 * 62.01327 * 1 2 3 24 24 H 1.08999 * 109.47111 * 240.00545 * 2 1 3 25 25 H 1.08995 * 109.47259 * 119.99702 * 2 1 3 26 26 H 0.96997 * 120.00396 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.47154 * 48.19938 * 14 13 3 28 28 H 1.08999 * 109.46840 * 168.19817 * 14 13 3 29 29 H 1.09001 * 109.47002 * 301.61009 * 15 14 13 30 30 H 1.08992 * 109.46835 * 61.60943 * 15 14 13 31 31 H 1.09004 * 109.46919 * 299.99594 * 16 15 14 32 32 H 1.08992 * 109.47517 * 60.00351 * 16 15 14 33 33 H 0.96691 * 114.00244 * 179.97438 * 17 16 15 34 34 H 1.08996 * 115.55418 * 315.25289 * 18 13 3 35 35 H 1.08997 * 117.49824 * 214.97185 * 19 18 13 36 36 H 1.08999 * 117.49448 * 359.97438 * 19 18 13 37 37 H 1.08992 * 117.50187 * 252.51647 * 20 19 18 38 38 H 1.08995 * 117.50250 * 107.48609 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9853 0.8340 5 6 1.6573 2.1106 -1.2955 6 1 2.2798 1.9896 -2.1699 7 6 0.5129 2.8764 -1.3645 8 7 -0.1981 3.0955 -0.2801 9 14 -0.0279 3.6025 -2.9984 10 1 -0.2701 2.5069 -3.9711 11 1 -1.2795 4.3781 -2.8054 12 1 1.0357 4.4994 -3.5178 13 7 3.5024 1.4449 0.1388 14 6 3.9029 1.0489 1.4956 15 6 3.5693 2.1758 2.4753 16 6 4.0229 1.7797 3.8818 17 8 3.7107 2.8320 4.7969 18 6 4.1283 0.5784 -0.8688 19 6 4.7403 1.2522 -2.0986 20 6 5.6487 0.6563 -1.0213 21 1 -0.3633 -1.0270 0.0361 22 1 -0.3634 0.5449 0.8714 23 1 -0.3634 0.4823 -0.9075 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 -1.0035 3.6339 -0.3287 27 1 3.3654 0.1456 1.7841 28 1 4.9754 0.8555 1.5159 29 1 4.0844 3.0867 2.1703 30 1 2.4933 2.3498 2.4760 31 1 3.5076 0.8688 4.1867 32 1 5.0988 1.6058 3.8811 33 1 3.9704 2.6490 5.7101 34 1 3.6576 -0.3945 -1.0099 35 1 4.6721 0.7226 -3.0488 36 1 4.6781 2.3387 -2.1603 37 1 6.1844 1.3507 -0.3742 38 1 6.1782 -0.2653 -1.2627 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404319125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:47 Heat of formation + Delta-G solvation = -29.095203 kcal Electronic energy + Delta-G solvation = -16785.399964 eV Core-core repulsion = 14242.569095 eV Total energy + Delta-G solvation = -2542.830869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.29104 -36.70053 -34.71390 -33.05987 -31.30772 -29.73848 -26.46229 -24.12161 -22.89619 -21.80750 -21.14266 -20.59290 -18.34446 -17.00561 -16.56381 -15.45783 -15.14080 -14.59373 -14.27702 -13.70295 -13.38026 -13.18578 -12.63276 -12.20274 -12.14421 -11.59307 -11.34019 -10.90231 -10.84036 -10.81340 -10.66676 -10.47856 -10.40020 -10.27695 -10.07682 -9.74207 -9.54352 -9.37772 -9.11037 -8.79440 -8.32782 -7.07668 -5.93634 -3.93159 3.36470 3.41379 3.44171 4.31587 4.49920 4.53950 4.95583 5.37077 5.42525 5.50638 5.60937 5.66695 5.79186 5.83727 5.95539 6.11754 6.16111 6.25007 6.32425 6.38213 6.43633 6.61920 6.64941 6.71809 6.85106 6.90689 6.99376 7.20298 7.31928 7.57085 7.63625 7.82211 7.96209 8.17279 8.45944 8.69065 9.14514 9.68318 11.15104 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.009735 C = 0.007991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.058761 B = 2875.551837 C = 3503.165384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.140 4.140 3 C 0.201 3.799 4 H 0.076 0.924 5 C -0.489 4.489 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.502 5.502 14 C 0.060 3.940 15 C -0.114 4.114 16 C 0.079 3.921 17 O -0.573 6.573 18 C 0.032 3.968 19 C -0.155 4.155 20 C -0.194 4.194 21 H 0.013 0.987 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.021 0.979 26 H 0.260 0.740 27 H 0.027 0.973 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.372 0.628 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 -5.265 4.394 10.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.180 4.180 3 C 0.096 3.904 4 H 0.094 0.906 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.530 5.530 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.225 5.225 14 C -0.069 4.069 15 C -0.152 4.152 16 C 0.001 3.999 17 O -0.377 6.377 18 C -0.077 4.077 19 C -0.193 4.193 20 C -0.232 4.232 21 H 0.032 0.968 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.217 0.783 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.509 -4.397 3.827 9.506 hybrid contribution -0.454 -0.741 -0.278 0.913 sum 7.055 -5.138 3.549 9.422 Atomic orbital electron populations 1.21415 0.95837 0.97063 1.03358 1.22217 0.96929 1.01392 0.97429 1.19687 0.80168 0.90778 0.99775 0.90574 1.20961 1.06922 1.29361 0.95563 0.92238 1.24886 0.97022 0.95683 0.95974 1.69909 1.16549 1.39545 1.26965 0.86744 0.77879 0.79209 0.84627 1.20486 1.21507 1.20347 1.62382 1.12339 1.48447 0.99367 1.21852 0.98983 0.95400 0.90634 1.21466 1.03418 0.99636 0.90707 1.22194 0.97865 0.89174 0.90669 1.86549 1.85729 1.44444 1.20992 1.22185 0.92067 0.96165 0.97286 1.22858 1.02735 1.01180 0.92502 1.23007 0.93539 1.02267 1.04347 0.96781 0.93135 0.91660 0.94006 0.96070 0.93041 0.95536 0.92488 0.90935 0.90383 0.94175 0.94274 0.78274 0.90320 0.90025 0.88253 0.89186 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.01 37.16 0.33 -2.35 16 2 C -0.14 -3.12 4.65 -26.73 -0.12 -3.24 16 3 C 0.20 4.87 1.84 -68.86 -0.13 4.75 16 4 H 0.08 2.08 5.48 -51.93 -0.28 1.80 16 5 C -0.49 -13.01 7.61 -34.44 -0.26 -13.28 16 6 H 0.06 1.59 6.31 -52.48 -0.33 1.26 16 7 C 0.07 1.79 4.35 -17.82 -0.08 1.72 16 8 N -0.89 -25.04 12.11 55.43 0.67 -24.37 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.50 -10.68 4.52 -220.09 -0.99 -11.67 16 14 C 0.06 1.09 4.83 -3.82 -0.02 1.07 16 15 C -0.11 -2.10 5.61 -26.73 -0.15 -2.25 16 16 C 0.08 1.15 7.05 37.16 0.26 1.41 16 17 O -0.57 -8.52 13.66 -35.23 -0.48 -9.01 16 18 C 0.03 0.61 4.04 -67.71 -0.27 0.34 16 19 C -0.16 -2.79 9.23 -26.73 -0.25 -3.03 16 20 C -0.19 -3.09 9.69 -26.73 -0.26 -3.35 16 21 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 22 H 0.05 1.19 8.14 -51.92 -0.42 0.77 16 23 H 0.06 1.61 6.64 -51.93 -0.34 1.27 16 24 H 0.04 0.92 6.40 -51.93 -0.33 0.59 16 25 H 0.02 0.44 6.37 -51.93 -0.33 0.10 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.03 0.49 6.25 -51.93 -0.32 0.16 16 28 H 0.06 0.93 7.20 -51.93 -0.37 0.56 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.08 1.67 6.63 -51.93 -0.34 1.33 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.37 3.41 9.12 45.56 0.42 3.83 16 34 H 0.08 1.54 6.03 -51.93 -0.31 1.23 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 37 H 0.09 1.42 7.96 -51.93 -0.41 1.01 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 296.88 15.07 4.47 4.47 Total: -1.00 -28.98 296.88 -7.79 -36.76 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.49 Total: 5.67 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -0.94 Total: -18.20 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.32 Total: -36.04 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.48 Total: -9.01 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.98 -7.79 -36.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404319125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.669 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds