Wall clock time and date at job start Mon Mar 30 2020 03:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47123 * 2 1 4 4 H 1.09004 * 109.47448 * 54.24233 * 3 2 1 5 5 C 1.50704 * 109.47133 * 294.24668 * 3 2 1 6 6 H 1.08008 * 119.99402 * 275.63567 * 5 3 2 7 7 C 1.37873 * 120.00166 * 95.64103 * 5 3 2 8 8 N 1.31515 * 120.00263 * 4.42134 * 7 5 3 9 9 Si 1.86796 * 119.99780 * 184.42544 * 7 5 3 10 10 H 1.48500 * 109.47284 * 59.99896 * 9 7 5 11 11 H 1.48506 * 109.47173 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47464 * 299.99731 * 9 7 5 13 13 N 1.46896 * 109.47202 * 174.24670 * 3 2 1 14 14 C 1.46907 * 110.99459 * 288.73328 * 13 3 2 15 15 C 1.53003 * 109.47156 * 288.19503 * 14 13 3 16 16 C 1.53001 * 109.46727 * 181.61010 * 15 14 13 17 17 O 1.42901 * 109.46942 * 180.02562 * 16 15 14 18 18 C 1.46894 * 111.00135 * 52.68319 * 13 3 2 19 19 C 1.53006 * 117.51612 * 100.95521 * 18 13 3 20 20 C 1.53001 * 60.00277 * 107.48124 * 19 18 13 21 21 H 1.08994 * 109.47038 * 182.01324 * 1 2 3 22 22 H 1.09007 * 109.47157 * 302.01586 * 1 2 3 23 23 H 1.09006 * 109.47376 * 62.01327 * 1 2 3 24 24 H 1.08999 * 109.47111 * 240.00545 * 2 1 3 25 25 H 1.08995 * 109.47259 * 119.99702 * 2 1 3 26 26 H 0.96997 * 120.00396 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.47154 * 48.19938 * 14 13 3 28 28 H 1.08999 * 109.46840 * 168.19817 * 14 13 3 29 29 H 1.09001 * 109.47002 * 301.61009 * 15 14 13 30 30 H 1.08992 * 109.46835 * 61.60943 * 15 14 13 31 31 H 1.09004 * 109.46919 * 299.99594 * 16 15 14 32 32 H 1.08992 * 109.47517 * 60.00351 * 16 15 14 33 33 H 0.96691 * 114.00244 * 179.97438 * 17 16 15 34 34 H 1.08996 * 115.55418 * 315.25289 * 18 13 3 35 35 H 1.08997 * 117.49824 * 214.97185 * 19 18 13 36 36 H 1.08999 * 117.49448 * 359.97438 * 19 18 13 37 37 H 1.08992 * 117.50187 * 252.51647 * 20 19 18 38 38 H 1.08995 * 117.50250 * 107.48609 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9853 0.8340 5 6 1.6573 2.1106 -1.2955 6 1 2.2798 1.9896 -2.1699 7 6 0.5129 2.8764 -1.3645 8 7 -0.1981 3.0955 -0.2801 9 14 -0.0279 3.6025 -2.9984 10 1 -0.2701 2.5069 -3.9711 11 1 -1.2795 4.3781 -2.8054 12 1 1.0357 4.4994 -3.5178 13 7 3.5024 1.4449 0.1388 14 6 3.9029 1.0489 1.4956 15 6 3.5693 2.1758 2.4753 16 6 4.0229 1.7797 3.8818 17 8 3.7107 2.8320 4.7969 18 6 4.1283 0.5784 -0.8688 19 6 4.7403 1.2522 -2.0986 20 6 5.6487 0.6563 -1.0213 21 1 -0.3633 -1.0270 0.0361 22 1 -0.3634 0.5449 0.8714 23 1 -0.3634 0.4823 -0.9075 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 -1.0035 3.6339 -0.3287 27 1 3.3654 0.1456 1.7841 28 1 4.9754 0.8555 1.5159 29 1 4.0844 3.0867 2.1703 30 1 2.4933 2.3498 2.4760 31 1 3.5076 0.8688 4.1867 32 1 5.0988 1.6058 3.8811 33 1 3.9704 2.6490 5.7101 34 1 3.6576 -0.3945 -1.0099 35 1 4.6721 0.7226 -3.0488 36 1 4.6781 2.3387 -2.1603 37 1 6.1844 1.3507 -0.3742 38 1 6.1782 -0.2653 -1.2627 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404319125.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:46 Heat of formation + Delta-G solvation = -49.580188 kcal Electronic energy + Delta-G solvation = -16786.288260 eV Core-core repulsion = 14242.569095 eV Total energy + Delta-G solvation = -2543.719165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.86417 -37.88567 -36.32039 -34.73286 -33.18568 -31.31389 -28.33564 -25.66837 -24.65864 -23.23721 -22.74452 -21.99855 -20.04164 -18.43716 -18.16974 -17.12112 -16.44451 -16.31733 -15.99661 -15.31902 -15.02287 -14.53970 -14.32847 -13.93138 -13.62507 -13.20088 -13.06839 -12.75621 -12.70704 -12.24879 -12.23193 -12.12857 -12.01311 -11.98362 -11.80816 -11.23810 -10.98252 -10.89055 -10.71900 -10.67190 -10.36523 -8.71226 -8.00950 -6.05295 1.42760 1.43715 1.50179 2.47832 3.03599 3.11501 3.35333 3.71049 4.05350 4.21565 4.28608 4.35121 4.42616 4.47934 4.51115 4.59831 4.64544 4.74323 4.80667 4.88563 4.89566 4.97529 5.14578 5.22296 5.25556 5.30888 5.40866 5.47460 5.52331 5.74571 5.76912 5.86523 6.28410 6.75988 6.86922 6.98668 7.07503 7.58822 9.06558 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.009735 C = 0.007991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.058761 B = 2875.551837 C = 3503.165384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.131 4.131 3 C 0.208 3.792 4 H 0.038 0.962 5 C -0.495 4.495 6 H 0.055 0.945 7 C 0.021 3.979 8 N -0.918 5.918 9 Si 0.939 3.061 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.520 5.520 14 C 0.065 3.935 15 C -0.110 4.110 16 C 0.087 3.913 17 O -0.598 6.598 18 C 0.007 3.993 19 C -0.167 4.167 20 C -0.156 4.156 21 H 0.044 0.956 22 H 0.030 0.970 23 H 0.038 0.962 24 H 0.046 0.954 25 H 0.037 0.963 26 H 0.256 0.744 27 H 0.029 0.971 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.397 0.603 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.538 -6.764 4.411 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.171 4.171 3 C 0.101 3.899 4 H 0.056 0.944 5 C -0.534 4.534 6 H 0.073 0.927 7 C -0.177 4.177 8 N -0.559 5.559 9 Si 0.766 3.234 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.243 5.243 14 C -0.063 4.063 15 C -0.149 4.149 16 C 0.009 3.991 17 O -0.407 6.407 18 C -0.102 4.102 19 C -0.205 4.205 20 C -0.193 4.193 21 H 0.063 0.937 22 H 0.049 0.951 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.247 0.753 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.319 -5.906 3.856 11.687 hybrid contribution -0.953 -0.269 -0.246 1.021 sum 8.366 -6.175 3.609 11.007 Atomic orbital electron populations 1.21301 0.96218 0.98264 1.01026 1.22072 0.96462 1.00255 0.98313 1.19374 0.82197 0.91202 0.97095 0.94413 1.21249 1.06630 1.29110 0.96449 0.92688 1.25504 0.97334 0.96428 0.98473 1.70046 1.16844 1.40477 1.28494 0.85910 0.77279 0.78589 0.81585 1.19749 1.21545 1.20327 1.62173 1.10583 1.50076 1.01511 1.21870 1.00460 0.95034 0.88893 1.21392 1.00410 0.99215 0.93846 1.22083 0.99596 0.89193 0.88248 1.86482 1.86230 1.45001 1.22958 1.22242 0.94575 0.95796 0.97561 1.22863 1.04198 0.99975 0.93451 1.23067 0.91298 1.03068 1.01870 0.93712 0.95105 0.94275 0.93550 0.94414 0.93474 0.95293 0.89718 0.92907 0.94665 0.92787 0.91289 0.75338 0.90514 0.88545 0.90653 0.88814 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.98 9.01 71.98 0.65 -4.33 16 2 C -0.13 -5.79 4.65 30.60 0.14 -5.65 16 3 C 0.21 10.24 1.84 44.17 0.08 10.32 16 4 H 0.04 2.16 5.48 -2.38 -0.01 2.15 16 5 C -0.50 -26.83 7.61 25.60 0.19 -26.64 16 6 H 0.05 2.97 6.31 -2.91 -0.02 2.95 16 7 C 0.02 1.18 4.35 84.65 0.37 1.55 16 8 N -0.92 -53.43 12.11 21.45 0.26 -53.17 16 9 Si 0.94 44.54 29.54 68.60 2.03 46.57 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 N -0.52 -21.96 4.52 -850.23 -3.84 -25.80 16 14 C 0.07 2.29 4.83 86.30 0.42 2.71 16 15 C -0.11 -4.07 5.61 30.60 0.17 -3.90 16 16 C 0.09 2.36 7.05 71.98 0.51 2.87 16 17 O -0.60 -17.01 13.66 -148.98 -2.03 -19.04 16 18 C 0.01 0.26 4.04 44.92 0.18 0.44 16 19 C -0.17 -5.74 9.23 30.60 0.28 -5.46 16 20 C -0.16 -4.42 9.69 30.60 0.30 -4.12 16 21 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.04 1.94 6.64 -2.38 -0.02 1.93 16 24 H 0.05 1.99 6.40 -2.39 -0.02 1.97 16 25 H 0.04 1.52 6.37 -2.39 -0.02 1.50 16 26 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.03 1.01 6.25 -2.39 -0.01 0.99 16 28 H 0.08 2.50 7.20 -2.39 -0.02 2.48 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.03 1.58 6.63 -2.39 -0.02 1.56 16 31 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.40 6.44 9.12 -74.06 -0.68 5.77 16 34 H 0.08 2.84 6.03 -2.39 -0.01 2.83 16 35 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.09 2.62 7.96 -2.39 -0.02 2.60 16 38 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -63.98 296.88 0.06 -63.92 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.36 Total: 19.74 kcal Atomic # 6 Polarization: -35.51 SS G_CDS: 3.29 Total: -32.22 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -3.58 Total: -78.97 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -2.03 Total: -19.04 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -63.98 0.06 -63.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404319125.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.339 kcal (2) G-P(sol) polarization free energy of solvation -63.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds