Wall clock time and date at job start Mon Mar 30 2020 03:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47015 * 2 1 4 4 H 1.09004 * 109.87435 * 306.01268 * 3 2 1 5 5 C 1.54100 * 109.88140 * 185.00027 * 3 2 1 6 6 C 1.54807 * 104.19191 * 238.40138 * 5 3 2 7 7 H 1.08998 * 110.91039 * 97.34846 * 6 5 3 8 8 N 1.46906 * 110.90770 * 220.92127 * 6 5 3 9 9 C 1.46899 * 110.99904 * 204.99840 * 8 6 5 10 10 C 1.52996 * 109.46973 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47328 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47457 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00087 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99956 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00308 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99908 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46845 * 60.00735 * 16 14 12 18 18 H 1.48503 * 109.47399 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47295 * 300.00832 * 16 14 12 20 20 C 1.54998 * 102.09027 * 339.11567 * 6 5 3 21 21 O 1.43750 * 110.00234 * 67.09672 * 3 2 1 22 22 H 1.08993 * 109.47358 * 59.99632 * 1 2 3 23 23 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46831 * 299.99717 * 1 2 3 25 25 H 1.09007 * 109.46661 * 240.00368 * 2 1 3 26 26 H 1.08993 * 109.47358 * 120.00368 * 2 1 3 27 27 H 1.08998 * 110.48859 * 119.71909 * 5 3 2 28 28 H 1.09004 * 110.59619 * 357.13371 * 5 3 2 29 29 H 1.00901 * 110.99468 * 328.94974 * 8 6 5 30 30 H 1.09001 * 109.47354 * 59.99669 * 9 8 6 31 31 H 1.09000 * 109.47162 * 299.99651 * 9 8 6 32 32 H 1.09001 * 109.47372 * 59.99654 * 10 9 8 33 33 H 1.09000 * 109.46870 * 299.99804 * 10 9 8 34 34 H 1.09001 * 109.47194 * 59.99524 * 11 10 9 35 35 H 1.09004 * 109.46724 * 300.00183 * 11 10 9 36 36 H 0.97000 * 119.99806 * 0.02562 * 15 14 12 37 37 H 1.09000 * 110.61845 * 155.52786 * 20 6 5 38 38 H 1.09000 * 110.61977 * 278.52045 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5952 1.9927 -0.8292 5 6 3.5757 1.4553 -0.1263 6 6 4.0544 2.2074 1.1393 7 1 4.3469 1.5064 1.9211 8 7 5.1581 3.1226 0.8194 9 6 5.9898 3.3783 2.0029 10 6 7.1255 4.3338 1.6313 11 6 7.9922 4.5996 2.8638 12 6 9.1112 5.5402 2.4976 13 1 9.1956 5.9117 1.4870 14 6 10.0267 5.9274 3.4531 15 7 9.9238 5.4756 4.6838 16 14 11.4134 7.0940 2.9994 17 1 10.8427 8.3745 2.5097 18 1 12.2547 7.3519 4.1956 19 1 12.2454 6.4826 1.9320 20 6 2.7838 2.9950 1.5489 21 8 1.7083 2.0813 1.2443 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.8801 1.9902 -1.0259 28 1 3.9682 0.4384 -0.1371 29 1 5.7141 2.7657 0.0568 30 1 6.4083 2.4384 2.3629 31 1 5.3791 3.8276 2.7860 32 1 6.7066 5.2736 1.2716 33 1 7.7363 3.8848 0.8480 34 1 8.4111 3.6596 3.2230 35 1 7.3816 5.0483 3.6474 36 1 9.2040 4.8695 4.9193 37 1 2.8017 3.2254 2.6141 38 1 2.6910 3.9072 0.9595 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594922318.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:06 Heat of formation + Delta-G solvation = -78.472489 kcal Electronic energy + Delta-G solvation = -15544.379507 eV Core-core repulsion = 12999.407478 eV Total energy + Delta-G solvation = -2544.972029 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.80530 -36.29290 -33.97167 -33.67718 -31.80236 -29.65718 -27.77106 -25.43269 -23.73146 -22.46898 -21.20716 -21.05375 -20.29092 -16.77965 -16.36341 -16.07728 -15.71370 -15.28066 -14.16561 -13.96418 -13.76251 -13.70677 -13.42156 -13.31771 -12.94919 -12.20458 -11.97127 -11.76528 -11.52292 -11.40850 -11.12801 -10.96115 -10.79507 -10.71679 -10.57294 -10.12121 -9.88160 -9.75330 -9.72901 -8.52701 -8.36466 -8.30877 -6.34821 -4.03556 3.44789 3.47022 3.65695 3.70271 4.24847 4.38937 4.46345 4.56900 4.81490 4.90502 5.05152 5.11098 5.22685 5.40737 5.42600 5.53706 5.58837 5.63382 5.68408 5.70978 5.73336 5.79531 5.91255 5.96983 6.07331 6.16461 6.54865 6.56802 6.80271 6.95615 7.19294 7.42428 7.44761 7.56526 8.24158 8.48228 8.90335 9.68841 11.05923 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.088749 B = 0.003621 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.419158 B = 7731.574528 C = 7823.173503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.080 3.920 4 H 0.067 0.933 5 C -0.157 4.157 6 C 0.052 3.948 7 H 0.060 0.940 8 N -0.679 5.679 9 C 0.057 3.943 10 C -0.100 4.100 11 C 0.009 3.991 12 C -0.601 4.601 13 H 0.048 0.952 14 C 0.013 3.987 15 N -0.914 5.914 16 Si 1.069 2.931 17 H -0.288 1.288 18 H -0.282 1.282 19 H -0.288 1.288 20 C 0.057 3.943 21 O -0.376 6.376 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.342 0.658 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.004 0.996 35 H 0.007 0.993 36 H 0.268 0.732 37 H 0.090 0.910 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.571 -10.002 -9.891 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C 0.022 3.978 4 H 0.085 0.915 5 C -0.195 4.195 6 C -0.059 4.059 7 H 0.078 0.922 8 N -0.311 5.311 9 C -0.071 4.071 10 C -0.138 4.138 11 C -0.029 4.029 12 C -0.639 4.639 13 H 0.067 0.933 14 C -0.191 4.191 15 N -0.551 5.551 16 Si 0.897 3.103 17 H -0.214 1.214 18 H -0.208 1.208 19 H -0.215 1.215 20 C -0.020 4.020 21 O -0.294 6.294 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.160 0.840 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.023 0.977 35 H 0.025 0.975 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.829 -8.687 -9.069 19.432 hybrid contribution -0.625 -1.625 -0.671 1.866 sum -15.454 -10.312 -9.740 20.977 Atomic orbital electron populations 1.21718 0.95331 1.01372 1.02293 1.21731 0.96807 0.95032 1.02472 1.22675 0.93578 0.93889 0.87663 0.91463 1.23197 0.95853 1.01376 0.99033 1.23091 0.93257 0.93099 0.96457 0.92202 1.60554 1.13409 1.47482 1.09702 1.22222 0.94710 0.98513 0.91697 1.21492 0.94512 0.97744 1.00066 1.19192 0.94547 0.96270 0.92855 1.22060 1.13099 1.30526 0.98261 0.93316 1.25873 1.00621 0.99014 0.93543 1.70783 1.33733 1.31616 1.18942 0.83542 0.75567 0.75650 0.75493 1.21407 1.20774 1.21479 1.23567 0.84328 0.92725 1.01384 1.88865 1.43736 1.57426 1.39402 0.92905 0.92909 0.91978 0.90969 0.91274 0.89772 0.90497 0.83967 0.95623 0.91440 0.92305 0.93442 0.97735 0.97462 0.92158 0.89223 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.83 37.16 0.37 -0.87 16 2 C -0.12 -1.07 5.43 -26.73 -0.15 -1.21 16 3 C 0.08 0.82 3.40 -26.16 -0.09 0.74 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.16 -1.58 6.14 -25.20 -0.15 -1.73 16 6 C 0.05 0.64 3.46 -65.70 -0.23 0.42 16 7 H 0.06 0.78 7.83 -51.93 -0.41 0.38 16 8 N -0.68 -9.67 6.37 -104.61 -0.67 -10.33 16 9 C 0.06 0.98 5.55 -3.83 -0.02 0.96 16 10 C -0.10 -2.09 5.41 -26.73 -0.14 -2.23 16 11 C 0.01 0.23 4.28 -27.88 -0.12 0.11 16 12 C -0.60 -17.51 9.11 -34.44 -0.31 -17.82 16 13 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 14 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 15 N -0.91 -28.53 13.65 55.43 0.76 -27.77 16 16 Si 1.07 25.65 29.90 -169.99 -5.08 20.57 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 20 C 0.06 0.73 7.41 38.21 0.28 1.01 16 21 O -0.38 -4.82 10.85 -35.23 -0.38 -5.20 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.59 7.91 -51.93 -0.41 0.18 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.81 7.93 -51.93 -0.41 0.39 16 28 H 0.08 0.69 7.70 -51.93 -0.40 0.29 16 29 H 0.34 4.50 8.34 -39.29 -0.33 4.17 16 30 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.00 0.12 8.01 -51.93 -0.42 -0.30 16 35 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 36 H 0.27 8.32 7.22 -40.82 -0.29 8.02 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 307.78 15.07 4.64 4.64 Total: -1.00 -31.09 307.78 -8.33 -39.42 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.93 Total: -0.97 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -0.66 Total: -20.36 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.09 Total: -38.10 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.38 Total: -5.20 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.09 -8.33 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594922318.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.048 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds