Wall clock time and date at job start Mon Mar 30 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47380 * 2 1 4 4 H 1.09010 * 110.55195 * 56.42298 * 3 2 1 5 5 C 1.54993 * 110.75451 * 179.39123 * 3 2 1 6 6 C 1.54818 * 102.09409 * 155.58986 * 5 3 2 7 7 H 1.08999 * 110.59898 * 97.85183 * 6 5 3 8 8 N 1.46895 * 110.48836 * 220.44726 * 6 5 3 9 9 C 1.46904 * 111.00014 * 201.22031 * 8 6 5 10 10 C 1.52997 * 109.46983 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47000 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47211 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31523 * 119.99908 * 179.72112 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 359.71709 * 14 12 11 17 17 H 1.48500 * 109.47210 * 90.00069 * 16 14 12 18 18 H 1.48504 * 109.47424 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00390 * 16 14 12 20 20 C 1.54099 * 104.18282 * 339.12366 * 6 5 3 21 21 O 1.43742 * 107.29833 * 357.96785 * 20 6 5 22 22 H 1.09008 * 109.46812 * 60.00198 * 1 2 3 23 23 H 1.09003 * 109.47205 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47391 * 300.00690 * 1 2 3 25 25 H 1.08995 * 109.47391 * 239.99310 * 2 1 3 26 26 H 1.09008 * 109.46812 * 119.99802 * 2 1 3 27 27 H 1.09006 * 110.90797 * 37.39223 * 5 3 2 28 28 H 1.09004 * 110.91417 * 273.78690 * 5 3 2 29 29 H 1.00901 * 111.00513 * 77.25984 * 8 6 5 30 30 H 1.08995 * 109.46789 * 59.99756 * 9 8 6 31 31 H 1.08998 * 109.46713 * 300.00198 * 9 8 6 32 32 H 1.09000 * 109.47849 * 59.99743 * 10 9 8 33 33 H 1.09007 * 109.47288 * 299.99336 * 10 9 8 34 34 H 1.09000 * 109.47211 * 59.99130 * 11 10 9 35 35 H 1.09007 * 109.46376 * 299.99672 * 11 10 9 36 36 H 0.96995 * 120.00181 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.88077 * 117.39567 * 20 6 5 38 38 H 1.09005 * 109.87406 * 238.39349 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6354 1.9914 0.8504 5 6 3.5895 1.4771 0.0154 6 6 3.8893 2.8603 -0.6121 7 1 4.0817 3.6002 0.1647 8 7 5.0324 2.7714 -1.5304 9 6 5.6435 4.0908 -1.7395 10 6 6.8273 3.9582 -2.6996 11 6 7.4642 5.3323 -2.9169 12 6 8.6298 5.2017 -3.8631 13 1 8.8905 4.2353 -4.2686 14 6 9.3671 6.3151 -4.2062 15 7 10.3878 6.2003 -5.0277 16 14 8.9165 7.9865 -3.5044 17 1 9.6476 8.2017 -2.2299 18 1 9.2895 9.0476 -4.4742 19 1 7.4542 8.0391 -3.2512 20 6 2.6029 3.2112 -1.3846 21 8 1.7006 2.1017 -1.2388 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.0027 0.6748 -0.5960 28 1 3.9698 1.4221 1.0355 29 1 4.7594 2.3560 -2.4085 30 1 5.9918 4.4852 -0.7849 31 1 4.9049 4.7699 -2.1654 32 1 6.4786 3.5639 -3.6542 33 1 7.5660 3.2790 -2.2740 34 1 7.8129 5.7261 -1.9622 35 1 6.7256 6.0118 -3.3423 36 1 10.9063 6.9836 -5.2694 37 1 2.1534 4.1118 -0.9663 38 1 2.8343 3.3677 -2.4382 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594922320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:07 Heat of formation + Delta-G solvation = -91.395942 kcal Electronic energy + Delta-G solvation = -15590.804401 eV Core-core repulsion = 13045.271969 eV Total energy + Delta-G solvation = -2545.532432 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.73697 -37.51853 -35.46266 -34.44227 -33.62299 -31.23081 -29.03894 -27.48980 -24.70210 -23.84949 -22.28825 -21.76697 -21.43850 -18.92959 -17.89514 -16.85783 -16.51826 -16.33755 -16.17229 -15.43517 -15.10229 -14.71993 -14.56686 -14.23687 -13.88306 -13.74492 -13.48480 -12.93176 -12.74739 -12.57508 -12.49502 -12.38878 -12.06784 -11.80010 -11.76380 -11.63230 -11.48901 -11.39923 -11.20500 -10.76727 -10.72868 -9.34980 -8.29725 -6.34351 1.36009 1.38163 1.50237 2.36360 2.84924 3.05533 3.13896 3.63376 3.84962 3.97340 4.08003 4.18035 4.25433 4.32271 4.36932 4.43631 4.57842 4.64600 4.69348 4.77819 4.87362 4.94939 4.97540 5.02202 5.10931 5.12316 5.15535 5.26462 5.43760 5.50986 5.60465 5.66059 5.90917 6.10080 6.28893 6.38119 6.74313 7.30377 8.87456 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.070730 B = 0.003931 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.776128 B = 7120.619933 C = 7271.287320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.071 3.929 4 H 0.078 0.922 5 C -0.134 4.134 6 C 0.054 3.946 7 H 0.098 0.902 8 N -0.683 5.683 9 C 0.068 3.932 10 C -0.092 4.092 11 C -0.010 4.010 12 C -0.535 4.535 13 H 0.028 0.972 14 C 0.000 4.000 15 N -0.954 5.954 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.244 1.244 20 C 0.019 3.981 21 O -0.392 6.392 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.344 0.656 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.049 0.951 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.266 0.734 37 H 0.066 0.934 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.978 -8.237 13.727 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.013 3.987 4 H 0.096 0.904 5 C -0.172 4.172 6 C -0.057 4.057 7 H 0.116 0.884 8 N -0.314 5.314 9 C -0.061 4.061 10 C -0.130 4.130 11 C -0.048 4.048 12 C -0.573 4.573 13 H 0.047 0.953 14 C -0.196 4.196 15 N -0.595 5.595 16 Si 0.779 3.221 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.168 1.168 20 C -0.060 4.060 21 O -0.312 6.312 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.163 0.837 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.569 -8.395 13.990 25.478 hybrid contribution 0.006 1.220 -0.842 1.482 sum -19.563 -7.175 13.148 24.638 Atomic orbital electron populations 1.21708 0.95123 1.02067 1.01724 1.21580 0.96811 0.93644 1.03311 1.23390 0.93705 0.94627 0.86936 0.90364 1.23163 0.95040 0.96521 1.02516 1.23059 0.88302 0.98762 0.95557 0.88404 1.60551 1.30138 1.22922 1.17808 1.21954 0.95229 0.89501 0.99390 1.21276 0.96473 0.97427 0.97850 1.19488 0.94556 0.95243 0.95483 1.21539 1.13674 0.94709 1.27395 0.95337 1.26102 0.94412 1.04042 0.95089 1.70085 1.20739 1.31687 1.36988 0.85576 0.80332 0.77828 0.78393 1.19018 1.21028 1.16787 1.23973 0.90805 0.90208 1.00968 1.88858 1.56589 1.44006 1.41756 0.93764 0.91695 0.92181 0.91962 0.88756 0.90413 0.88585 0.83709 0.90747 0.94828 0.93626 0.93251 0.96122 0.96140 0.92488 0.91546 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.83 71.98 0.71 -1.39 16 2 C -0.12 -1.70 5.72 30.59 0.17 -1.53 16 3 C 0.07 1.23 3.32 31.27 0.10 1.33 16 4 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 5 C -0.13 -2.41 6.32 31.90 0.20 -2.21 16 6 C 0.05 1.13 3.35 45.91 0.15 1.28 16 7 H 0.10 1.91 7.87 -2.39 -0.02 1.89 16 8 N -0.68 -17.69 6.24 -486.47 -3.03 -20.72 16 9 C 0.07 2.03 5.53 86.30 0.48 2.51 16 10 C -0.09 -3.61 5.41 30.59 0.17 -3.44 16 11 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 12 C -0.54 -31.60 9.66 25.60 0.25 -31.35 16 13 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16 14 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 15 N -0.95 -60.99 13.96 21.45 0.30 -60.70 16 16 Si 0.96 44.54 27.46 68.60 1.88 46.42 16 17 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.24 -10.45 6.55 99.48 0.65 -9.80 16 20 C 0.02 0.41 7.29 72.35 0.53 0.94 16 21 O -0.39 -9.05 10.89 -148.98 -1.62 -10.67 16 22 H 0.04 0.77 7.92 -2.38 -0.02 0.75 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.08 1.54 7.98 -2.38 -0.02 1.52 16 28 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.34 8.86 8.25 -89.69 -0.74 8.12 16 30 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 31 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.02 0.93 7.56 -2.39 -0.02 0.91 16 35 H 0.02 0.93 7.21 -2.38 -0.02 0.91 16 36 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.71 7.65 -2.38 -0.02 1.69 16 Total: -1.00 -66.82 305.48 1.08 -65.75 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.21 Total: 13.66 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 3.34 Total: -33.74 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -2.73 Total: -81.42 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -1.62 Total: -10.67 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -66.82 1.08 -65.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594922320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.649 kcal (2) G-P(sol) polarization free energy of solvation -66.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds