Wall clock time and date at job start Mon Mar 30 2020 03:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47370 * 2 1 4 4 H 1.09004 * 109.47087 * 305.66815 * 3 2 1 5 5 C 1.50704 * 109.46882 * 185.67087 * 3 2 1 6 6 H 1.08002 * 119.99940 * 242.72307 * 5 3 2 7 7 C 1.37883 * 120.00209 * 62.72951 * 5 3 2 8 8 N 1.31511 * 119.99861 * 195.57472 * 7 5 3 9 9 Si 1.86798 * 119.99978 * 15.56996 * 7 5 3 10 10 H 1.48499 * 109.47089 * 90.72898 * 9 7 5 11 11 H 1.48495 * 109.47108 * 210.73299 * 9 7 5 12 12 H 1.48501 * 109.47064 * 330.73347 * 9 7 5 13 13 N 1.46899 * 109.47487 * 65.67077 * 3 2 1 14 14 C 1.46895 * 111.00048 * 205.39629 * 13 3 2 15 15 H 1.08998 * 110.46042 * 323.44726 * 14 13 3 16 16 C 1.54478 * 110.51305 * 86.04962 * 14 13 3 17 17 O 1.44429 * 104.80614 * 142.62222 * 16 14 13 18 18 C 1.44429 * 105.27246 * 319.48921 * 17 16 14 19 19 H 1.08998 * 110.37295 * 281.67818 * 18 17 16 20 20 C 1.52996 * 110.37248 * 159.45274 * 18 17 16 21 21 C 1.53000 * 109.47248 * 66.45308 * 20 18 17 22 22 C 1.54480 * 104.80167 * 40.51177 * 18 17 16 23 23 H 1.08997 * 109.47470 * 174.89201 * 1 2 3 24 24 H 1.09001 * 109.46714 * 294.89677 * 1 2 3 25 25 H 1.09006 * 109.47079 * 54.89035 * 1 2 3 26 26 H 1.09006 * 109.46910 * 239.99417 * 2 1 3 27 27 H 1.08998 * 109.46802 * 120.00281 * 2 1 3 28 28 H 0.97004 * 120.00029 * 179.97438 * 8 7 5 29 29 H 1.00896 * 110.99764 * 81.43641 * 13 3 2 30 30 H 1.08999 * 110.37306 * 261.45505 * 16 14 13 31 31 H 1.08999 * 110.37424 * 23.68264 * 16 14 13 32 32 H 1.09002 * 109.47574 * 186.45676 * 20 18 17 33 33 H 1.09002 * 109.47390 * 306.45429 * 20 18 17 34 34 H 1.09001 * 109.47247 * 60.00106 * 21 20 18 35 35 H 1.08998 * 109.47158 * 180.02562 * 21 20 18 36 36 H 1.09002 * 109.46817 * 300.00193 * 21 20 18 37 37 H 1.08999 * 110.50892 * 217.37151 * 22 18 17 38 38 H 1.09003 * 110.50988 * 94.66564 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5962 1.9847 -0.8349 5 6 3.5405 1.4446 -0.1404 6 1 4.1563 1.8464 0.6507 7 6 4.1272 0.9337 -1.2788 8 7 5.4114 0.6504 -1.2862 9 14 3.0979 0.6440 -2.8105 10 1 3.1237 1.8606 -3.6616 11 1 3.6541 -0.5039 -3.5708 12 1 1.6977 0.3451 -2.4166 13 7 1.6654 2.0944 1.2620 14 6 1.5756 3.5511 1.0955 15 1 2.3450 3.9043 0.4089 16 6 0.1726 3.9527 0.5890 17 8 -0.1256 5.1905 1.2707 18 6 0.3553 5.0071 2.6202 19 1 -0.3482 4.4049 3.1951 20 6 0.5723 6.3619 3.2971 21 6 -0.7761 7.0603 3.4844 22 6 1.6986 4.2608 2.4625 23 1 -0.3634 -1.0235 -0.0915 24 1 -0.3633 0.4326 0.9322 25 1 -0.3633 0.5911 -0.8407 26 1 1.8933 -0.5140 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.8241 0.2907 -2.0870 29 1 2.3111 1.8536 1.9989 30 1 0.1887 4.1079 -0.4897 31 1 -0.5586 3.1879 0.8507 32 1 1.0416 6.2114 4.2693 33 1 1.2182 6.9802 2.6738 34 1 -1.4220 6.4420 4.1077 35 1 -0.6214 8.0257 3.9662 36 1 -1.2453 7.2108 2.5121 37 1 1.8260 3.5307 3.2618 38 1 2.5290 4.9669 2.4529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597085071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:27 Heat of formation + Delta-G solvation = -61.754399 kcal Electronic energy + Delta-G solvation = -16581.720972 eV Core-core repulsion = 14037.473894 eV Total energy + Delta-G solvation = -2544.247078 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.32609 -36.20453 -33.47540 -32.72332 -31.83268 -29.34680 -27.60277 -26.07001 -23.51896 -22.49373 -20.88337 -20.24091 -19.70055 -16.98500 -16.02512 -15.54123 -15.27689 -14.81964 -14.11879 -13.68028 -13.49930 -13.28810 -12.98681 -12.76812 -12.51117 -12.05203 -11.74201 -11.50170 -11.36261 -11.22298 -10.93263 -10.82902 -10.72768 -10.56103 -10.30573 -10.09495 -9.77747 -9.55421 -9.41018 -9.21747 -8.49644 -7.43845 -6.18626 -4.15050 3.24450 3.34390 3.37798 4.18902 4.36561 4.81108 4.96136 5.03526 5.16227 5.19907 5.31447 5.39680 5.60817 5.70384 5.89702 5.92202 5.98028 6.03862 6.08345 6.10729 6.12386 6.21837 6.31486 6.33836 6.36356 6.55436 6.68120 6.77960 6.99439 7.08587 7.23293 7.34138 7.55964 8.00055 8.32367 8.44735 8.87299 9.48364 10.94331 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036277 B = 0.006938 C = 0.006540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.655427 B = 4035.048793 C = 4280.253120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.187 3.813 4 H 0.027 0.973 5 C -0.554 4.554 6 H 0.070 0.930 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.862 3.138 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.246 1.246 13 N -0.672 5.672 14 C 0.060 3.940 15 H 0.063 0.937 16 C 0.055 3.945 17 O -0.378 6.378 18 C 0.079 3.921 19 H 0.065 0.935 20 C -0.118 4.118 21 C -0.149 4.149 22 C -0.150 4.150 23 H 0.031 0.969 24 H 0.056 0.944 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.264 0.736 29 H 0.337 0.663 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.212 6.813 6.744 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C 0.078 3.922 4 H 0.044 0.956 5 C -0.592 4.592 6 H 0.088 0.912 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.688 3.312 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.170 1.170 13 N -0.303 5.303 14 C -0.051 4.051 15 H 0.081 0.919 16 C -0.022 4.022 17 O -0.297 6.297 18 C 0.021 3.979 19 H 0.083 0.917 20 C -0.156 4.156 21 C -0.206 4.206 22 C -0.188 4.188 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.155 0.845 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.841 6.831 6.457 14.348 hybrid contribution 0.862 -0.230 -1.004 1.343 sum -9.979 6.600 5.452 13.148 Atomic orbital electron populations 1.21734 0.97982 0.99048 1.01138 1.21845 0.93327 0.98983 1.00777 1.19526 0.94234 0.90856 0.87605 0.95559 1.21671 0.90558 1.42130 1.04822 0.91183 1.24950 0.94714 0.93912 0.98859 1.69998 1.11546 1.42389 1.28746 0.87256 0.82464 0.77961 0.83494 1.20735 1.21355 1.17042 1.60869 1.55019 1.04964 1.09462 1.22704 0.96727 0.90226 0.95467 0.91895 1.23483 0.96111 0.85733 0.96913 1.89059 1.81993 1.36032 1.22647 1.22924 0.94355 0.95727 0.84910 0.91675 1.21596 0.98258 0.95530 1.00181 1.21713 0.97167 0.99708 1.02029 1.23121 0.97690 0.99693 0.98281 0.94974 0.92445 0.94293 0.92876 0.92881 0.92664 0.84461 0.89960 0.91506 0.90992 0.91262 0.93002 0.93092 0.92072 0.90259 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.75 37.16 0.36 -2.21 16 2 C -0.11 -2.37 4.84 -26.73 -0.13 -2.50 16 3 C 0.19 4.21 1.38 -68.87 -0.10 4.12 16 4 H 0.03 0.62 6.53 -51.93 -0.34 0.28 16 5 C -0.55 -14.90 8.78 -34.44 -0.30 -15.20 16 6 H 0.07 2.05 7.96 -52.49 -0.42 1.64 16 7 C 0.08 2.22 5.32 -17.82 -0.09 2.13 16 8 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 9 Si 0.86 20.85 25.77 -169.99 -4.38 16.47 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.25 -5.59 5.41 56.52 0.31 -5.29 16 13 N -0.67 -12.98 5.59 -99.32 -0.56 -13.53 16 14 C 0.06 1.07 3.21 -66.15 -0.21 0.86 16 15 H 0.06 1.29 7.74 -51.93 -0.40 0.89 16 16 C 0.05 0.92 7.15 37.93 0.27 1.19 16 17 O -0.38 -6.17 11.00 -35.23 -0.39 -6.55 16 18 C 0.08 1.09 3.27 -25.96 -0.08 1.00 16 19 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.12 -1.36 5.58 -26.73 -0.15 -1.51 16 21 C -0.15 -1.56 9.83 37.16 0.37 -1.19 16 22 C -0.15 -2.22 6.31 -25.16 -0.16 -2.38 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.99 7.91 -51.93 -0.41 0.58 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 1.20 4.69 -51.93 -0.24 0.96 16 27 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.34 6.56 7.85 -39.29 -0.31 6.26 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 37 H 0.08 1.11 7.63 -51.93 -0.40 0.71 16 38 H 0.07 1.03 7.88 -51.93 -0.41 0.63 16 LS Contribution 297.10 15.07 4.48 4.48 Total: -1.00 -28.58 297.10 -7.09 -35.67 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.79 Total: 5.05 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -0.23 Total: -15.68 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.22 Total: -39.43 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.39 Total: -6.55 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.38 Total: 16.47 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.58 -7.09 -35.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597085071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.082 kcal (2) G-P(sol) polarization free energy of solvation -28.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds