Wall clock time and date at job start Mon Mar 30 2020 03:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47370 * 2 1 4 4 H 1.09004 * 109.47087 * 305.66815 * 3 2 1 5 5 C 1.50704 * 109.46882 * 185.67087 * 3 2 1 6 6 H 1.08002 * 119.99940 * 242.72307 * 5 3 2 7 7 C 1.37883 * 120.00209 * 62.72951 * 5 3 2 8 8 N 1.31511 * 119.99861 * 195.57472 * 7 5 3 9 9 Si 1.86798 * 119.99978 * 15.56996 * 7 5 3 10 10 H 1.48499 * 109.47089 * 90.72898 * 9 7 5 11 11 H 1.48495 * 109.47108 * 210.73299 * 9 7 5 12 12 H 1.48501 * 109.47064 * 330.73347 * 9 7 5 13 13 N 1.46899 * 109.47487 * 65.67077 * 3 2 1 14 14 C 1.46895 * 111.00048 * 205.39629 * 13 3 2 15 15 H 1.08998 * 110.46042 * 323.44726 * 14 13 3 16 16 C 1.54478 * 110.51305 * 86.04962 * 14 13 3 17 17 O 1.44429 * 104.80614 * 142.62222 * 16 14 13 18 18 C 1.44429 * 105.27246 * 319.48921 * 17 16 14 19 19 H 1.08998 * 110.37295 * 281.67818 * 18 17 16 20 20 C 1.52996 * 110.37248 * 159.45274 * 18 17 16 21 21 C 1.53000 * 109.47248 * 66.45308 * 20 18 17 22 22 C 1.54480 * 104.80167 * 40.51177 * 18 17 16 23 23 H 1.08997 * 109.47470 * 174.89201 * 1 2 3 24 24 H 1.09001 * 109.46714 * 294.89677 * 1 2 3 25 25 H 1.09006 * 109.47079 * 54.89035 * 1 2 3 26 26 H 1.09006 * 109.46910 * 239.99417 * 2 1 3 27 27 H 1.08998 * 109.46802 * 120.00281 * 2 1 3 28 28 H 0.97004 * 120.00029 * 179.97438 * 8 7 5 29 29 H 1.00896 * 110.99764 * 81.43641 * 13 3 2 30 30 H 1.08999 * 110.37306 * 261.45505 * 16 14 13 31 31 H 1.08999 * 110.37424 * 23.68264 * 16 14 13 32 32 H 1.09002 * 109.47574 * 186.45676 * 20 18 17 33 33 H 1.09002 * 109.47390 * 306.45429 * 20 18 17 34 34 H 1.09001 * 109.47247 * 60.00106 * 21 20 18 35 35 H 1.08998 * 109.47158 * 180.02562 * 21 20 18 36 36 H 1.09002 * 109.46817 * 300.00193 * 21 20 18 37 37 H 1.08999 * 110.50892 * 217.37151 * 22 18 17 38 38 H 1.09003 * 110.50988 * 94.66564 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5962 1.9847 -0.8349 5 6 3.5405 1.4446 -0.1404 6 1 4.1563 1.8464 0.6507 7 6 4.1272 0.9337 -1.2788 8 7 5.4114 0.6504 -1.2862 9 14 3.0979 0.6440 -2.8105 10 1 3.1237 1.8606 -3.6616 11 1 3.6541 -0.5039 -3.5708 12 1 1.6977 0.3451 -2.4166 13 7 1.6654 2.0944 1.2620 14 6 1.5756 3.5511 1.0955 15 1 2.3450 3.9043 0.4089 16 6 0.1726 3.9527 0.5890 17 8 -0.1256 5.1905 1.2707 18 6 0.3553 5.0071 2.6202 19 1 -0.3482 4.4049 3.1951 20 6 0.5723 6.3619 3.2971 21 6 -0.7761 7.0603 3.4844 22 6 1.6986 4.2608 2.4625 23 1 -0.3634 -1.0235 -0.0915 24 1 -0.3633 0.4326 0.9322 25 1 -0.3633 0.5911 -0.8407 26 1 1.8933 -0.5140 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 5.8241 0.2907 -2.0870 29 1 2.3111 1.8536 1.9989 30 1 0.1887 4.1079 -0.4897 31 1 -0.5586 3.1879 0.8507 32 1 1.0416 6.2114 4.2693 33 1 1.2182 6.9802 2.6738 34 1 -1.4220 6.4420 4.1077 35 1 -0.6214 8.0257 3.9662 36 1 -1.2453 7.2108 2.5121 37 1 1.8260 3.5307 3.2618 38 1 2.5290 4.9669 2.4529 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597085071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:27 Heat of formation + Delta-G solvation = -81.035692 kcal Electronic energy + Delta-G solvation = -16582.557072 eV Core-core repulsion = 14037.473894 eV Total energy + Delta-G solvation = -2545.083178 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61671 -37.87218 -34.65942 -34.34781 -33.62260 -30.72969 -29.01323 -27.79087 -24.72522 -24.14313 -21.97841 -21.62562 -21.44993 -19.04472 -17.40388 -16.87479 -16.58581 -16.54053 -15.57598 -15.31234 -14.94948 -14.60839 -14.40824 -14.06978 -13.90402 -13.54905 -13.42175 -13.01554 -12.80088 -12.56087 -12.44813 -12.14895 -12.10460 -11.83772 -11.75706 -11.54095 -11.40741 -11.34879 -11.03849 -10.67393 -10.60994 -9.13936 -8.36006 -6.35885 1.31356 1.36315 1.45691 2.32034 2.95783 3.02009 3.53313 3.65951 3.80370 4.11700 4.25189 4.39861 4.42805 4.46935 4.51360 4.55618 4.66151 4.75813 4.84097 4.92262 4.96364 4.98974 5.04886 5.11066 5.12550 5.25421 5.28278 5.37796 5.46710 5.50028 5.52810 5.71263 5.90662 6.11295 6.38951 6.62450 6.78995 7.31511 8.80396 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036277 B = 0.006938 C = 0.006540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.655427 B = 4035.048793 C = 4280.253120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.112 4.112 3 C 0.193 3.807 4 H 0.023 0.977 5 C -0.552 4.552 6 H 0.031 0.969 7 C 0.023 3.977 8 N -0.940 5.940 9 Si 0.921 3.079 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.219 1.219 13 N -0.657 5.657 14 C 0.054 3.946 15 H 0.029 0.971 16 C 0.062 3.938 17 O -0.389 6.389 18 C 0.078 3.922 19 H 0.076 0.924 20 C -0.117 4.117 21 C -0.146 4.146 22 C -0.144 4.144 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.265 0.735 29 H 0.336 0.664 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.595 7.008 7.284 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.150 4.150 3 C 0.083 3.917 4 H 0.041 0.959 5 C -0.591 4.591 6 H 0.049 0.951 7 C -0.176 4.176 8 N -0.579 5.579 9 Si 0.745 3.255 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.142 1.142 13 N -0.287 5.287 14 C -0.057 4.057 15 H 0.047 0.953 16 C -0.016 4.016 17 O -0.308 6.308 18 C 0.021 3.979 19 H 0.094 0.906 20 C -0.154 4.154 21 C -0.204 4.204 22 C -0.182 4.182 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.153 0.847 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.252 7.038 7.016 16.565 hybrid contribution 1.675 -0.236 -1.067 2.000 sum -11.577 6.802 5.949 14.687 Atomic orbital electron populations 1.21640 0.94918 1.00676 1.01768 1.21772 0.96003 0.97298 0.99965 1.19405 0.91059 0.92255 0.88932 0.95890 1.22000 0.92878 1.40687 1.03519 0.95068 1.25786 0.95733 0.94005 1.02078 1.70130 1.13631 1.44452 1.29707 0.86292 0.82243 0.77661 0.79278 1.20755 1.21318 1.14152 1.60887 1.54157 1.05805 1.07879 1.22745 0.96735 0.89397 0.96836 0.95302 1.23355 0.95115 0.86207 0.96888 1.89061 1.82094 1.35699 1.23918 1.23104 0.93540 0.97202 0.84049 0.90581 1.21629 0.98975 0.94077 1.00727 1.21691 0.96459 1.00666 1.01538 1.23100 0.98703 0.99808 0.96635 0.92809 0.91570 0.93989 0.94195 0.93345 0.92651 0.84659 0.90274 0.90829 0.88948 0.92031 0.92144 0.91451 0.93573 0.89156 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.75 71.98 0.70 -3.66 16 2 C -0.11 -4.59 4.84 30.59 0.15 -4.44 16 3 C 0.19 8.60 1.38 44.17 0.06 8.66 16 4 H 0.02 1.06 6.53 -2.38 -0.02 1.04 16 5 C -0.55 -30.40 8.78 25.60 0.22 -30.18 16 6 H 0.03 1.91 7.96 -2.91 -0.02 1.89 16 7 C 0.02 1.31 5.32 84.66 0.45 1.76 16 8 N -0.94 -58.01 13.96 21.45 0.30 -57.71 16 9 Si 0.92 43.00 25.77 68.60 1.77 44.76 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.22 -9.18 5.41 99.48 0.54 -8.64 16 13 N -0.66 -24.87 5.59 -468.14 -2.62 -27.49 16 14 C 0.05 1.91 3.21 45.93 0.15 2.05 16 15 H 0.03 1.22 7.74 -2.39 -0.02 1.20 16 16 C 0.06 1.99 7.15 72.48 0.52 2.51 16 17 O -0.39 -12.03 11.00 -148.98 -1.64 -13.67 16 18 C 0.08 2.00 3.27 31.10 0.10 2.10 16 19 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 20 C -0.12 -2.40 5.58 30.59 0.17 -2.23 16 21 C -0.15 -2.69 9.83 71.98 0.71 -1.99 16 22 C -0.14 -4.10 6.31 31.61 0.20 -3.90 16 23 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.07 2.06 7.91 -2.39 -0.02 2.04 16 25 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.04 1.73 4.69 -2.38 -0.01 1.71 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.34 12.98 7.85 -89.70 -0.70 12.27 16 30 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.07 2.28 8.06 -2.39 -0.02 2.26 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.05 0.98 7.91 -2.39 -0.02 0.96 16 37 H 0.09 2.36 7.63 -2.39 -0.02 2.35 16 38 H 0.07 2.05 7.88 -2.39 -0.02 2.03 16 Total: -1.00 -62.04 297.10 1.38 -60.66 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.14 Total: 22.75 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 3.43 Total: -29.30 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -2.32 Total: -85.20 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -1.64 Total: -13.67 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.77 Total: 44.76 kcal Total: -62.04 1.38 -60.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597085071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.378 kcal (2) G-P(sol) polarization free energy of solvation -62.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds