Wall clock time and date at job start Mon Mar 30 2020 03:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47232 * 2 1 4 4 H 1.08996 * 109.46949 * 305.63786 * 3 2 1 5 5 C 1.50699 * 109.47094 * 185.62972 * 3 2 1 6 6 H 1.08001 * 120.00359 * 239.99402 * 5 3 2 7 7 C 1.37878 * 119.99396 * 60.00814 * 5 3 2 8 8 N 1.31506 * 120.00506 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99630 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47003 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47306 * 119.99372 * 9 7 5 12 12 H 1.48504 * 109.46981 * 239.99687 * 9 7 5 13 13 N 1.46908 * 109.46593 * 65.63536 * 3 2 1 14 14 C 1.46903 * 110.99312 * 207.39545 * 13 3 2 15 15 H 1.09000 * 110.99276 * 37.36427 * 14 13 3 16 16 C 1.54950 * 111.12759 * 273.16320 * 14 13 3 17 17 O 1.43641 * 105.13939 * 205.59549 * 16 14 13 18 18 C 1.43236 * 109.96704 * 24.43144 * 17 16 14 19 19 H 1.09002 * 109.83142 * 238.68046 * 18 17 16 20 20 C 1.53008 * 109.83220 * 117.80047 * 18 17 16 21 21 C 1.52998 * 109.46938 * 66.44969 * 20 18 17 22 22 C 1.54381 * 107.59364 * 358.28770 * 18 17 16 23 23 H 1.09003 * 109.47163 * 294.11001 * 1 2 3 24 24 H 1.08992 * 109.47267 * 54.11720 * 1 2 3 25 25 H 1.09002 * 109.46838 * 174.11822 * 1 2 3 26 26 H 1.08999 * 109.47036 * 240.00080 * 2 1 3 27 27 H 1.09008 * 109.47372 * 120.00098 * 2 1 3 28 28 H 0.97000 * 120.00408 * 180.02562 * 8 7 5 29 29 H 1.00894 * 110.99931 * 331.34563 * 13 3 2 30 30 H 1.09000 * 110.30663 * 86.68232 * 16 14 13 31 31 H 1.08994 * 110.30786 * 324.51799 * 16 14 13 32 32 H 1.08993 * 109.46685 * 306.45250 * 20 18 17 33 33 H 1.09001 * 109.46870 * 186.44696 * 20 18 17 34 34 H 1.09001 * 109.47326 * 300.00332 * 21 20 18 35 35 H 1.08995 * 109.47480 * 180.02562 * 21 20 18 36 36 H 1.09003 * 109.47420 * 59.99856 * 21 20 18 37 37 H 1.08993 * 110.84963 * 96.83662 * 22 18 17 38 38 H 1.09008 * 110.84772 * 220.45561 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5405 1.4447 -0.1394 6 1 4.1539 1.8865 0.6320 7 6 4.1303 0.8830 -1.2519 8 7 3.3835 0.3448 -2.1911 9 14 5.9903 0.8864 -1.4251 10 1 6.5964 1.5480 -0.2417 11 1 6.4815 -0.5120 -1.5165 12 1 6.3715 1.6264 -2.6548 13 7 1.6645 2.0945 1.2617 14 6 1.5285 3.5464 1.0838 15 1 1.0880 3.7815 0.1148 16 6 2.8910 4.2615 1.2660 17 8 2.5613 5.5979 1.6764 18 6 1.2693 5.6151 2.2945 19 1 0.6093 6.2927 1.7530 20 6 1.3965 6.0681 3.7505 21 6 1.8452 7.5302 3.7924 22 6 0.7069 4.1784 2.2403 23 1 -0.3634 0.4198 0.9380 24 1 -0.3633 0.6023 -0.8326 25 1 -0.3633 -1.0223 -0.1053 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.7984 -0.0507 -2.9736 29 1 0.8172 1.6953 1.6369 30 1 3.4380 4.2792 0.3234 31 1 3.4795 3.7634 2.0364 32 1 2.1326 5.4473 4.2611 33 1 0.4311 5.9699 4.2471 34 1 2.8105 7.6284 3.2957 35 1 1.9362 7.8528 4.8295 36 1 1.1091 8.1510 3.2817 37 1 0.8905 3.6543 3.1782 38 1 -0.3566 4.1869 2.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597085073.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:31 Heat of formation + Delta-G solvation = -64.844645 kcal Electronic energy + Delta-G solvation = -16570.832863 eV Core-core repulsion = 14026.451782 eV Total energy + Delta-G solvation = -2544.381081 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.25548 -36.12361 -33.31725 -32.71716 -31.46244 -29.25164 -27.16705 -26.15762 -23.29292 -22.76582 -20.84752 -20.00480 -19.40979 -16.75844 -16.18285 -15.47396 -14.76076 -14.34378 -14.07928 -13.90673 -13.53420 -12.98168 -12.97245 -12.58834 -12.42043 -12.03636 -11.57484 -11.50260 -11.16078 -10.96633 -10.87121 -10.74015 -10.64628 -10.56015 -10.26048 -9.91170 -9.68128 -9.55139 -9.17035 -8.93259 -8.35767 -7.34989 -5.98123 -4.02077 3.31529 3.39838 3.45024 4.26634 4.45074 4.85107 4.90603 5.23307 5.24593 5.30000 5.38449 5.44646 5.65382 5.83952 5.90859 5.98302 5.99465 6.11248 6.11593 6.16065 6.20784 6.33594 6.37282 6.46264 6.61435 6.73481 6.80981 7.03635 7.12405 7.41805 7.54430 7.75047 7.90404 8.25728 8.36348 8.69343 9.05780 9.63174 11.07449 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026999 B = 0.007713 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.814206 B = 3629.156186 C = 4477.290745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.217 3.783 4 H 0.004 0.996 5 C -0.492 4.492 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.674 5.674 14 C 0.067 3.933 15 H 0.050 0.950 16 C 0.067 3.933 17 O -0.387 6.387 18 C 0.083 3.917 19 H 0.071 0.929 20 C -0.132 4.132 21 C -0.147 4.147 22 C -0.156 4.156 23 H 0.034 0.966 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.100 0.900 27 H 0.041 0.959 28 H 0.259 0.741 29 H 0.322 0.678 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.879 7.197 7.975 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.109 3.891 4 H 0.021 0.979 5 C -0.530 4.530 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.307 5.307 14 C -0.044 4.044 15 H 0.068 0.932 16 C -0.009 4.009 17 O -0.306 6.306 18 C 0.025 3.975 19 H 0.089 0.911 20 C -0.170 4.170 21 C -0.204 4.204 22 C -0.194 4.194 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.119 0.881 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.140 0.860 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.072 7.326 7.999 11.974 hybrid contribution -0.036 -0.292 -0.702 0.762 sum -5.108 7.034 7.296 11.349 Atomic orbital electron populations 1.21883 0.99619 0.99778 0.99475 1.21794 0.91210 1.00382 1.03186 1.19278 0.95741 0.90019 0.84025 0.97851 1.21250 0.91114 1.36444 1.04239 0.91814 1.24957 0.98073 0.95631 0.95872 1.69873 1.34620 1.39533 1.09597 0.86523 0.85842 0.77611 0.77961 1.19685 1.21149 1.21217 1.60683 1.37390 1.00354 1.32286 1.23026 0.94725 0.90796 0.95828 0.93246 1.23424 0.96652 0.80331 1.00503 1.88382 1.34142 1.29631 1.78465 1.22590 0.85731 0.96080 0.93084 0.91117 1.21901 1.01468 0.97266 0.96370 1.21692 1.01999 0.95890 1.00865 1.23340 0.99826 0.95670 1.00573 0.94689 0.93897 0.94329 0.88147 0.93996 0.93130 0.86008 0.89219 0.91532 0.91459 0.91600 0.91973 0.93303 0.93169 0.89926 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.65 37.16 0.36 -2.48 16 2 C -0.13 -2.93 5.34 -26.73 -0.14 -3.07 16 3 C 0.22 5.24 2.03 -68.86 -0.14 5.10 16 4 H 0.00 0.10 7.46 -51.93 -0.39 -0.28 16 5 C -0.49 -13.19 8.07 -34.44 -0.28 -13.47 16 6 H 0.06 1.74 7.36 -52.49 -0.39 1.35 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.21 11.29 55.43 0.63 -24.59 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 13 N -0.67 -13.84 6.21 -98.60 -0.61 -14.45 16 14 C 0.07 1.26 3.36 -65.46 -0.22 1.04 16 15 H 0.05 0.99 7.55 -51.93 -0.39 0.60 16 16 C 0.07 1.31 6.34 38.19 0.24 1.56 16 17 O -0.39 -6.94 10.63 -35.23 -0.37 -7.31 16 18 C 0.08 1.21 3.52 -26.00 -0.09 1.12 16 19 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.13 -1.63 5.50 -26.73 -0.15 -1.78 16 21 C -0.15 -1.68 9.82 37.16 0.36 -1.31 16 22 C -0.16 -2.30 6.03 -24.78 -0.15 -2.45 16 23 H 0.03 0.58 6.66 -51.93 -0.35 0.24 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 27 H 0.04 0.96 8.14 -51.92 -0.42 0.54 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.32 5.99 6.39 -39.30 -0.25 5.74 16 30 H 0.09 1.90 8.07 -51.93 -0.42 1.48 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.79 7.88 -51.93 -0.41 0.38 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.19 7.85 -51.93 -0.41 0.78 16 38 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 LS Contribution 298.84 15.07 4.50 4.50 Total: -1.00 -27.63 298.84 -7.84 -35.47 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.67 Total: 4.35 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.30 Total: -14.32 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.01 Total: -39.04 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.37 Total: -7.31 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.63 -7.84 -35.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597085073.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.370 kcal (2) G-P(sol) polarization free energy of solvation -27.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds