Wall clock time and date at job start Mon Mar 30 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47232 * 2 1 4 4 H 1.08996 * 109.46949 * 305.63786 * 3 2 1 5 5 C 1.50699 * 109.47094 * 185.62972 * 3 2 1 6 6 H 1.08001 * 120.00359 * 239.99402 * 5 3 2 7 7 C 1.37878 * 119.99396 * 60.00814 * 5 3 2 8 8 N 1.31506 * 120.00506 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99630 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47003 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47306 * 119.99372 * 9 7 5 12 12 H 1.48504 * 109.46981 * 239.99687 * 9 7 5 13 13 N 1.46908 * 109.46593 * 65.63536 * 3 2 1 14 14 C 1.46903 * 110.99312 * 207.39545 * 13 3 2 15 15 H 1.09000 * 110.99276 * 37.36427 * 14 13 3 16 16 C 1.54950 * 111.12759 * 273.16320 * 14 13 3 17 17 O 1.43641 * 105.13939 * 205.59549 * 16 14 13 18 18 C 1.43236 * 109.96704 * 24.43144 * 17 16 14 19 19 H 1.09002 * 109.83142 * 238.68046 * 18 17 16 20 20 C 1.53008 * 109.83220 * 117.80047 * 18 17 16 21 21 C 1.52998 * 109.46938 * 66.44969 * 20 18 17 22 22 C 1.54381 * 107.59364 * 358.28770 * 18 17 16 23 23 H 1.09003 * 109.47163 * 294.11001 * 1 2 3 24 24 H 1.08992 * 109.47267 * 54.11720 * 1 2 3 25 25 H 1.09002 * 109.46838 * 174.11822 * 1 2 3 26 26 H 1.08999 * 109.47036 * 240.00080 * 2 1 3 27 27 H 1.09008 * 109.47372 * 120.00098 * 2 1 3 28 28 H 0.97000 * 120.00408 * 180.02562 * 8 7 5 29 29 H 1.00894 * 110.99931 * 331.34563 * 13 3 2 30 30 H 1.09000 * 110.30663 * 86.68232 * 16 14 13 31 31 H 1.08994 * 110.30786 * 324.51799 * 16 14 13 32 32 H 1.08993 * 109.46685 * 306.45250 * 20 18 17 33 33 H 1.09001 * 109.46870 * 186.44696 * 20 18 17 34 34 H 1.09001 * 109.47326 * 300.00332 * 21 20 18 35 35 H 1.08995 * 109.47480 * 180.02562 * 21 20 18 36 36 H 1.09003 * 109.47420 * 59.99856 * 21 20 18 37 37 H 1.08993 * 110.84963 * 96.83662 * 22 18 17 38 38 H 1.09008 * 110.84772 * 220.45561 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8352 5 6 3.5405 1.4447 -0.1394 6 1 4.1539 1.8865 0.6320 7 6 4.1303 0.8830 -1.2519 8 7 3.3835 0.3448 -2.1911 9 14 5.9903 0.8864 -1.4251 10 1 6.5964 1.5480 -0.2417 11 1 6.4815 -0.5120 -1.5165 12 1 6.3715 1.6264 -2.6548 13 7 1.6645 2.0945 1.2617 14 6 1.5285 3.5464 1.0838 15 1 1.0880 3.7815 0.1148 16 6 2.8910 4.2615 1.2660 17 8 2.5613 5.5979 1.6764 18 6 1.2693 5.6151 2.2945 19 1 0.6093 6.2927 1.7530 20 6 1.3965 6.0681 3.7505 21 6 1.8452 7.5302 3.7924 22 6 0.7069 4.1784 2.2403 23 1 -0.3634 0.4198 0.9380 24 1 -0.3633 0.6023 -0.8326 25 1 -0.3633 -1.0223 -0.1053 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.7984 -0.0507 -2.9736 29 1 0.8172 1.6953 1.6369 30 1 3.4380 4.2792 0.3234 31 1 3.4795 3.7634 2.0364 32 1 2.1326 5.4473 4.2611 33 1 0.4311 5.9699 4.2471 34 1 2.8105 7.6284 3.2957 35 1 1.9362 7.8528 4.8295 36 1 1.1091 8.1510 3.2817 37 1 0.8905 3.6543 3.1782 38 1 -0.3566 4.1869 2.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597085073.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:30 Heat of formation + Delta-G solvation = -82.311512 kcal Electronic energy + Delta-G solvation = -16571.590283 eV Core-core repulsion = 14026.451782 eV Total energy + Delta-G solvation = -2545.138502 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.63970 -37.86833 -34.63977 -34.32383 -33.23722 -30.65294 -28.65844 -28.03142 -24.73108 -24.31697 -22.15971 -21.55895 -21.04126 -18.52338 -17.76300 -17.00327 -16.66097 -15.82425 -15.65851 -15.27895 -14.94903 -14.64115 -14.28366 -13.93886 -13.83443 -13.64143 -13.16945 -12.94719 -12.69980 -12.58871 -12.49190 -12.18005 -12.08235 -11.87087 -11.79086 -11.63613 -11.50060 -11.16215 -11.00387 -10.43291 -10.37605 -9.11377 -8.06789 -6.17236 1.39078 1.42108 1.53063 2.43545 2.91479 3.18966 3.53760 3.62113 3.91057 4.10989 4.25105 4.30211 4.41052 4.50471 4.57093 4.60043 4.68723 4.71768 4.84619 4.91476 5.01410 5.07251 5.09674 5.12310 5.14592 5.24560 5.35592 5.39435 5.46606 5.60739 5.75968 5.90128 6.14418 6.36218 6.49746 6.94906 6.97046 7.51454 8.96927 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026999 B = 0.007713 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.814206 B = 3629.156186 C = 4477.290745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.224 3.776 4 H -0.030 1.030 5 C -0.504 4.504 6 H 0.053 0.947 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.284 1.284 13 N -0.671 5.671 14 C 0.063 3.937 15 H 0.033 0.967 16 C 0.075 3.925 17 O -0.399 6.399 18 C 0.074 3.926 19 H 0.085 0.915 20 C -0.128 4.128 21 C -0.146 4.146 22 C -0.140 4.140 23 H 0.060 0.940 24 H 0.035 0.965 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.259 0.741 29 H 0.336 0.664 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.032 7.740 9.571 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.116 3.884 4 H -0.013 1.013 5 C -0.543 4.543 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.210 1.210 13 N -0.305 5.305 14 C -0.048 4.048 15 H 0.051 0.949 16 C -0.002 4.002 17 O -0.319 6.319 18 C 0.017 3.983 19 H 0.103 0.897 20 C -0.166 4.166 21 C -0.204 4.204 22 C -0.178 4.178 23 H 0.079 0.921 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.155 0.845 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.239 7.876 9.613 13.906 hybrid contribution 0.302 -0.402 -1.178 1.281 sum -5.936 7.475 8.435 12.738 Atomic orbital electron populations 1.21751 0.96185 1.01156 1.00571 1.21620 0.94306 0.98887 1.01371 1.19034 0.94249 0.90737 0.84429 1.01277 1.21500 0.92694 1.36062 1.03997 0.92874 1.25631 1.01859 0.95554 0.95771 1.69994 1.36002 1.40157 1.09934 0.85642 0.81383 0.77672 0.77770 1.19521 1.20574 1.21020 1.60515 1.38364 1.01404 1.30193 1.23013 0.95109 0.89719 0.96988 0.94867 1.23131 0.96922 0.81420 0.98718 1.88368 1.36180 1.28384 1.78977 1.22915 0.84303 0.96430 0.94669 0.89719 1.21892 1.02706 0.97438 0.94547 1.21684 1.01136 0.95603 1.01933 1.23291 1.00584 0.95060 0.98882 0.92079 0.94627 0.92447 0.91434 0.94238 0.93163 0.84459 0.92101 0.92658 0.92463 0.88862 0.94048 0.91550 0.92141 0.89076 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 9.65 71.98 0.69 -4.33 16 2 C -0.12 -5.68 5.34 30.59 0.16 -5.51 16 3 C 0.22 11.01 2.03 44.17 0.09 11.10 16 4 H -0.03 -1.68 7.46 -2.39 -0.02 -1.70 16 5 C -0.50 -27.66 8.07 25.60 0.21 -27.45 16 6 H 0.05 2.97 7.36 -2.91 -0.02 2.95 16 7 C 0.01 0.54 5.29 84.66 0.45 0.99 16 8 N -0.92 -52.93 11.29 21.45 0.24 -52.68 16 9 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 N -0.67 -27.21 6.21 -465.85 -2.89 -30.11 16 14 C 0.06 2.32 3.36 46.37 0.16 2.47 16 15 H 0.03 1.35 7.55 -2.39 -0.02 1.33 16 16 C 0.08 2.98 6.34 72.65 0.46 3.45 16 17 O -0.40 -14.18 10.63 -148.98 -1.58 -15.77 16 18 C 0.07 2.00 3.52 31.07 0.11 2.11 16 19 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 20 C -0.13 -2.79 5.50 30.60 0.17 -2.62 16 21 C -0.15 -2.98 9.82 71.98 0.71 -2.27 16 22 C -0.14 -3.76 6.03 31.86 0.19 -3.57 16 23 H 0.06 1.87 6.66 -2.39 -0.02 1.86 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.07 3.59 5.94 -2.39 -0.01 3.57 16 27 H 0.04 1.79 8.14 -2.38 -0.02 1.78 16 28 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 29 H 0.34 11.84 6.39 -89.70 -0.57 11.27 16 30 H 0.06 2.72 8.07 -2.39 -0.02 2.70 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 34 H 0.04 1.00 7.88 -2.39 -0.02 0.98 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 2.33 7.85 -2.39 -0.02 2.31 16 38 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -60.53 298.84 1.62 -58.90 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.44 Total: 18.74 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 3.40 Total: -25.64 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -2.65 Total: -82.79 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -1.58 Total: -15.77 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -60.53 1.62 -58.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597085073.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.408 kcal (2) G-P(sol) polarization free energy of solvation -60.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds