Wall clock time and date at job start Mon Mar 30 2020 03:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47239 * 2 1 4 4 H 1.09000 * 109.47504 * 304.27616 * 3 2 1 5 5 C 1.50703 * 109.47194 * 184.27720 * 3 2 1 6 6 H 1.07996 * 120.00583 * 239.99593 * 5 3 2 7 7 C 1.37882 * 120.00022 * 60.00221 * 5 3 2 8 8 N 1.31520 * 119.99552 * 359.97438 * 7 5 3 9 9 Si 1.86790 * 120.00311 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47382 * 89.99641 * 9 7 5 11 11 H 1.48508 * 109.47193 * 209.99788 * 9 7 5 12 12 H 1.48501 * 109.47290 * 329.99694 * 9 7 5 13 13 N 1.46899 * 109.47248 * 64.28340 * 3 2 1 14 14 C 1.46907 * 110.99935 * 206.90828 * 13 3 2 15 15 H 1.09004 * 110.45852 * 30.79037 * 14 13 3 16 16 C 1.54481 * 110.62535 * 268.10235 * 14 13 3 17 17 O 1.44423 * 104.80259 * 217.31655 * 16 14 13 18 18 C 1.44425 * 105.27297 * 40.51559 * 17 16 14 19 19 H 1.09003 * 110.37479 * 78.31549 * 18 17 16 20 20 C 1.53005 * 110.46839 * 200.60415 * 18 17 16 21 21 C 1.52997 * 109.47280 * 290.44021 * 20 18 17 22 22 C 1.54481 * 104.80457 * 319.48658 * 18 17 16 23 23 H 1.09003 * 109.46989 * 294.90523 * 1 2 3 24 24 H 1.09003 * 109.47020 * 54.89868 * 1 2 3 25 25 H 1.08999 * 109.47383 * 174.89946 * 1 2 3 26 26 H 1.09006 * 109.47188 * 239.99793 * 2 1 3 27 27 H 1.09003 * 109.47059 * 120.00000 * 2 1 3 28 28 H 0.97003 * 119.99567 * 180.02562 * 8 7 5 29 29 H 1.00893 * 111.00369 * 82.95231 * 13 3 2 30 30 H 1.08999 * 110.37131 * 336.15577 * 16 14 13 31 31 H 1.09005 * 110.36715 * 98.48823 * 16 14 13 32 32 H 1.09008 * 109.46443 * 50.43511 * 20 18 17 33 33 H 1.08997 * 109.47122 * 170.43244 * 20 18 17 34 34 H 1.08997 * 109.47167 * 59.98991 * 21 20 18 35 35 H 1.08993 * 109.47125 * 179.97438 * 21 20 18 36 36 H 1.09000 * 109.46735 * 299.99725 * 21 20 18 37 37 H 1.09004 * 110.51154 * 265.33427 * 22 18 17 38 38 H 1.08999 * 110.51139 * 142.62866 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6155 1.9780 -0.8492 5 6 3.5433 1.4438 -0.1060 6 1 4.1394 1.8916 0.6753 7 6 4.1577 0.8732 -1.2005 8 7 3.4318 0.3275 -2.1518 9 14 6.0210 0.8742 -1.3316 10 1 6.5624 -0.3552 -0.6987 11 1 6.4166 0.9096 -2.7626 12 1 6.5655 2.0690 -0.6379 13 7 1.6366 2.1045 1.2478 14 6 1.5160 3.5563 1.0583 15 1 1.2125 3.7832 0.0363 16 6 2.8480 4.2617 1.3968 17 8 2.4592 5.4962 2.0376 18 6 1.3512 5.1470 2.8957 19 1 1.7126 4.6710 3.8073 20 6 0.5258 6.3895 3.2361 21 6 1.3354 7.3026 4.1589 22 6 0.5087 4.1520 2.0671 23 1 -0.3633 0.4328 0.9321 24 1 -0.3633 0.5910 -0.8408 25 1 -0.3634 -1.0236 -0.0914 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8641 -0.0742 -2.9217 29 1 2.2793 1.8895 1.9953 30 1 3.4389 3.6499 2.0784 31 1 3.4103 4.4677 0.4860 32 1 0.2806 6.9252 2.3189 33 1 -0.3937 6.0885 3.7380 34 1 2.2549 7.6034 3.6570 35 1 0.7475 8.1879 4.4010 36 1 1.5807 6.7669 5.0760 37 1 -0.2928 4.6735 1.5438 38 1 0.1019 3.3698 2.7080 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597085074.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:32 Heat of formation + Delta-G solvation = -83.508707 kcal Electronic energy + Delta-G solvation = -16554.394761 eV Core-core repulsion = 14009.204345 eV Total energy + Delta-G solvation = -2545.190416 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.63798 -37.70419 -34.68496 -34.30224 -33.16703 -30.71502 -28.66168 -27.55543 -24.59411 -24.44167 -22.16710 -21.50439 -21.40625 -18.65533 -17.36831 -17.00160 -16.53896 -16.32162 -15.38935 -15.13400 -14.71900 -14.50602 -14.31434 -13.91789 -13.64049 -13.40415 -13.17896 -13.05794 -12.70665 -12.59169 -12.53429 -12.33067 -12.07458 -11.79725 -11.66878 -11.62691 -11.47609 -11.18937 -10.96908 -10.66871 -10.45391 -9.07793 -8.05600 -6.26734 1.37496 1.40086 1.47726 2.39730 2.97275 3.15086 3.63951 3.80436 3.94464 4.11113 4.19873 4.26514 4.45590 4.50340 4.61995 4.68258 4.77374 4.87611 4.90982 4.94410 5.02270 5.11667 5.14273 5.19040 5.21703 5.27598 5.43161 5.46514 5.53433 5.64112 5.76921 5.93875 6.11789 6.19592 6.38691 6.79108 7.00475 7.44787 8.91428 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028458 B = 0.007482 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.674618 B = 3741.518546 C = 4557.309792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.221 3.779 4 H -0.001 1.001 5 C -0.554 4.554 6 H 0.054 0.946 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.665 5.665 14 C 0.066 3.934 15 H 0.059 0.941 16 C 0.035 3.965 17 O -0.392 6.392 18 C 0.068 3.932 19 H 0.069 0.931 20 C -0.114 4.114 21 C -0.148 4.148 22 C -0.132 4.132 23 H 0.059 0.941 24 H 0.029 0.971 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.333 0.667 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.453 7.879 9.834 13.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.593 4.593 6 H 0.073 0.927 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.772 3.228 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.295 5.295 14 C -0.046 4.046 15 H 0.078 0.922 16 C -0.043 4.043 17 O -0.311 6.311 18 C 0.011 3.989 19 H 0.087 0.913 20 C -0.151 4.151 21 C -0.205 4.205 22 C -0.170 4.170 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.030 7.886 9.533 13.764 hybrid contribution 2.192 -0.210 -0.740 2.323 sum -3.838 7.676 8.793 12.287 Atomic orbital electron populations 1.21551 0.96413 0.99505 1.00662 1.21370 0.94389 0.98353 1.00107 1.19020 0.91739 0.91541 0.86449 0.98347 1.22178 0.93790 1.37606 1.05738 0.92737 1.25624 1.01747 0.94918 0.95591 1.70008 1.36322 1.38694 1.09986 0.85758 0.81553 0.78456 0.77070 1.20149 1.21189 1.19721 1.60932 1.53859 1.06169 1.08501 1.22787 0.94004 0.88851 0.98917 0.92222 1.24026 0.97743 0.85897 0.96672 1.89058 1.51151 1.30301 1.60624 1.23249 0.86579 0.96008 0.93075 0.91286 1.21608 0.98437 0.94568 1.00470 1.21716 0.99987 0.99725 0.99117 1.22975 0.97789 0.98544 0.97718 0.92215 0.95223 0.93810 0.92162 0.95168 0.92975 0.84980 0.92687 0.91005 0.91737 0.88586 0.93964 0.91221 0.92311 0.90146 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.89 9.73 71.98 0.70 -4.19 16 2 C -0.10 -4.87 5.45 30.59 0.17 -4.70 16 3 C 0.22 10.71 1.99 44.17 0.09 10.79 16 4 H 0.00 -0.08 7.38 -2.39 -0.02 -0.10 16 5 C -0.55 -29.02 8.06 25.60 0.21 -28.81 16 6 H 0.05 2.80 7.20 -2.91 -0.02 2.78 16 7 C 0.02 1.15 5.29 84.66 0.45 1.60 16 8 N -0.91 -51.55 11.29 21.45 0.24 -51.31 16 9 Si 0.95 43.03 29.54 68.60 2.03 45.05 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 13 N -0.66 -26.42 5.54 -468.10 -2.60 -29.02 16 14 C 0.07 2.41 3.43 45.93 0.16 2.56 16 15 H 0.06 2.43 7.39 -2.39 -0.02 2.41 16 16 C 0.04 1.29 6.45 72.49 0.47 1.76 16 17 O -0.39 -13.33 11.14 -148.98 -1.66 -14.99 16 18 C 0.07 1.83 3.24 31.10 0.10 1.93 16 19 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 20 C -0.11 -2.38 5.56 30.60 0.17 -2.21 16 21 C -0.15 -2.87 9.85 71.98 0.71 -2.16 16 22 C -0.13 -3.73 6.42 31.61 0.20 -3.53 16 23 H 0.06 2.19 7.88 -2.39 -0.02 2.17 16 24 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 3.22 5.97 -2.38 -0.01 3.21 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.33 12.99 7.70 -89.70 -0.69 12.30 16 30 H 0.05 2.02 7.40 -2.39 -0.02 2.01 16 31 H 0.07 2.89 8.14 -2.38 -0.02 2.88 16 32 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 0.96 8.01 -2.39 -0.02 0.94 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 2.09 7.87 -2.38 -0.02 2.08 16 38 H 0.09 2.47 7.97 -2.39 -0.02 2.45 16 Total: -1.00 -56.92 300.65 1.75 -55.16 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.32 Total: 22.07 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 3.42 Total: -26.96 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -2.35 Total: -80.33 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -1.66 Total: -14.99 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -56.92 1.75 -55.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597085074.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.344 kcal (2) G-P(sol) polarization free energy of solvation -56.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds