Wall clock time and date at job start Mon Mar 30 2020 03:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47179 * 2 1 4 4 C 1.53001 * 109.47247 * 240.00037 * 2 1 3 5 5 O 1.42902 * 109.47254 * 119.99928 * 2 1 3 6 6 C 1.42904 * 113.99828 * 60.00123 * 5 2 1 7 7 C 1.53514 * 114.16878 * 209.99943 * 6 5 2 8 8 N 1.47482 * 87.93039 * 220.33055 * 7 6 5 9 9 C 1.46901 * 110.99764 * 138.70591 * 8 7 6 10 10 C 1.53000 * 109.46769 * 169.99993 * 9 8 7 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99711 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00219 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46794 * 90.00022 * 15 13 11 17 17 H 1.48502 * 109.47140 * 210.00005 * 15 13 11 18 18 H 1.48501 * 109.46982 * 330.00118 * 15 13 11 19 19 C 1.47480 * 87.83699 * 27.01095 * 8 7 6 20 20 H 1.09002 * 109.47122 * 299.99653 * 1 2 3 21 21 H 1.08998 * 109.47584 * 60.00218 * 1 2 3 22 22 H 1.08999 * 109.47258 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47252 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47186 * 300.00217 * 3 2 1 25 25 H 1.09005 * 109.47052 * 59.99696 * 3 2 1 26 26 H 1.08997 * 109.47228 * 300.00037 * 4 2 1 27 27 H 1.08996 * 109.46881 * 59.99928 * 4 2 1 28 28 H 1.08995 * 109.47120 * 179.97438 * 4 2 1 29 29 H 1.08999 * 113.38480 * 343.08219 * 6 5 2 30 30 H 1.08994 * 113.47382 * 105.55899 * 7 6 5 31 31 H 1.09003 * 113.47448 * 335.09807 * 7 6 5 32 32 H 1.09002 * 109.47401 * 49.99700 * 9 8 7 33 33 H 1.09001 * 109.46874 * 289.99713 * 9 8 7 34 34 H 1.09001 * 109.47194 * 299.99524 * 10 9 8 35 35 H 1.08992 * 109.47399 * 59.99697 * 10 9 8 36 36 H 0.97000 * 119.99684 * 179.97438 * 14 13 11 37 37 H 1.08999 * 113.47664 * 87.75895 * 19 8 7 38 38 H 1.08994 * 113.47488 * 218.22090 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 1.4294 -2.5437 2.7048 8 7 2.0336 -3.8150 2.2646 9 6 2.9821 -4.3214 3.2656 10 6 3.3975 -5.7475 2.8988 11 6 4.3701 -6.2672 3.9260 12 1 4.6629 -5.6427 4.7570 13 6 4.8859 -7.5401 3.8049 14 7 5.7351 -7.9935 4.7010 15 14 4.3788 -8.6207 2.3679 16 1 5.3104 -8.4031 1.2322 17 1 4.4254 -10.0466 2.7802 18 1 2.9976 -8.2713 1.9492 19 6 2.7321 -3.0540 1.2120 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1299 1.4425 0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6766 1.9564 0.8900 26 1 1.6767 -1.7489 -1.2493 27 1 1.6766 -0.2074 -2.1392 28 1 3.1299 -0.7208 -1.2495 29 1 0.7443 -2.2760 0.6133 30 1 0.3909 -2.6427 3.0206 31 1 2.0397 -1.9993 3.4254 32 1 2.5085 -4.3219 4.2473 33 1 3.8635 -3.6805 3.2877 34 1 2.5160 -6.3884 2.8767 35 1 3.8710 -5.7470 1.9171 36 1 6.0977 -8.8891 4.6160 37 1 3.6900 -2.6460 1.5342 38 1 2.7976 -3.5858 0.2628 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687715832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:51 Heat of formation + Delta-G solvation = -21.041261 kcal Electronic energy + Delta-G solvation = -16089.342415 eV Core-core repulsion = 13546.860791 eV Total energy + Delta-G solvation = -2542.481624 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.21552 -38.05637 -33.70563 -32.92398 -31.03267 -27.91378 -27.59776 -26.94677 -25.63904 -23.42652 -20.69991 -19.90058 -19.64973 -16.97747 -16.75045 -15.64458 -15.27347 -14.86105 -14.43235 -14.09848 -13.87798 -13.03671 -12.94624 -12.82604 -12.50558 -12.41727 -12.19432 -12.07150 -11.92982 -11.90113 -11.44280 -11.26684 -10.94169 -10.74619 -10.49238 -9.90398 -9.78167 -9.62155 -9.37042 -9.20222 -8.51098 -8.49200 -6.02016 -4.00168 3.34492 3.41457 3.48669 3.54157 4.45962 4.49123 4.53460 4.66200 4.75604 4.83751 5.01199 5.22646 5.32284 5.32805 5.36735 5.51904 5.58369 5.61195 5.63602 5.75052 5.80469 5.84509 5.88277 5.95951 6.03185 6.07843 6.11498 6.29600 6.67416 6.85704 7.16628 7.30817 7.44667 7.61480 7.84708 8.55310 9.01833 9.60702 11.11384 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051732 B = 0.004906 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.124535 B = 5705.980858 C = 5850.699874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.177 4.177 5 O -0.362 6.362 6 C 0.055 3.945 7 C -0.002 4.002 8 N -0.471 5.471 9 C 0.038 3.962 10 C -0.002 4.002 11 C -0.522 4.522 12 H 0.070 0.930 13 C 0.068 3.932 14 N -0.905 5.905 15 Si 0.881 3.119 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.263 1.263 19 C -0.014 4.014 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.023 0.977 35 H 0.010 0.990 36 H 0.263 0.737 37 H 0.076 0.924 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.235 16.834 -11.437 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.065 3.935 3 C -0.195 4.195 4 C -0.234 4.234 5 O -0.281 6.281 6 C -0.004 4.004 7 C -0.132 4.132 8 N -0.195 5.195 9 C -0.089 4.089 10 C -0.040 4.040 11 C -0.561 4.561 12 H 0.088 0.912 13 C -0.133 4.133 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.187 1.187 19 C -0.143 4.143 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.412 16.176 -11.387 22.355 hybrid contribution 0.344 -0.248 -0.542 0.688 sum -10.068 15.927 -11.929 22.301 Atomic orbital electron populations 1.22463 0.95810 1.02645 1.02635 1.21503 0.93034 0.93111 0.85854 1.21754 1.02014 0.93450 1.02242 1.22469 1.02394 1.01022 0.97549 1.88038 1.73773 1.23710 1.42552 1.23835 0.97460 0.81057 0.98005 1.24087 1.01610 0.91424 0.96030 1.68916 1.23209 1.18228 1.09175 1.22673 0.93026 0.98934 0.94292 1.19441 0.96545 0.91343 0.96657 1.21110 1.24942 1.00012 1.10013 0.91151 1.24993 0.94524 0.97753 0.96078 1.69918 1.31143 1.17917 1.35379 0.86756 0.79950 0.79557 0.82959 1.20367 1.21412 1.18748 1.24418 0.97434 0.94035 0.98425 0.91728 0.91682 0.91999 0.91799 0.91344 0.91894 0.92006 0.91830 0.91642 0.88262 0.89839 0.90817 0.91519 0.94192 0.95817 0.97156 0.92746 0.90611 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.38 37.15 0.31 -1.23 16 2 C 0.10 1.05 1.11 -90.62 -0.10 0.95 16 3 C -0.14 -1.18 8.84 37.16 0.33 -0.85 16 4 C -0.18 -1.65 8.38 37.16 0.31 -1.34 16 5 O -0.36 -4.76 10.04 -35.23 -0.35 -5.11 16 6 C 0.05 0.74 3.16 -26.20 -0.08 0.65 16 7 C 0.00 -0.04 7.52 -7.54 -0.06 -0.09 16 8 N -0.47 -8.56 6.33 -244.64 -1.55 -10.11 16 9 C 0.04 0.81 4.76 -3.82 -0.02 0.80 16 10 C 0.00 -0.05 4.37 -27.88 -0.12 -0.17 16 11 C -0.52 -15.35 9.66 -34.44 -0.33 -15.69 16 12 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 15 Si 0.88 22.39 27.47 -169.99 -4.67 17.72 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 18 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 19 C -0.01 -0.22 7.55 -7.54 -0.06 -0.28 16 20 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.55 6.28 -51.93 -0.33 0.22 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.61 6.98 -51.93 -0.36 0.24 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.10 1.21 5.56 -51.93 -0.29 0.92 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.12 7.91 -51.93 -0.41 0.71 16 32 H 0.07 1.41 8.08 -51.93 -0.42 0.99 16 33 H 0.04 0.85 7.30 -51.93 -0.38 0.47 16 34 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 35 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.08 1.26 7.42 -51.93 -0.39 0.88 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 301.63 15.07 4.55 4.55 Total: -1.00 -31.57 301.63 -7.90 -39.47 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -6.73 Total: -3.52 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 0.08 Total: -15.33 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.78 Total: -37.78 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.35 Total: -5.11 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.67 Total: 17.72 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.57 -7.90 -39.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687715832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.424 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds