Wall clock time and date at job start Mon Mar 30 2020 03:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47179 * 2 1 4 4 C 1.53001 * 109.47247 * 240.00037 * 2 1 3 5 5 O 1.42902 * 109.47254 * 119.99928 * 2 1 3 6 6 C 1.42904 * 113.99828 * 60.00123 * 5 2 1 7 7 C 1.53514 * 114.16878 * 209.99943 * 6 5 2 8 8 N 1.47482 * 87.93039 * 220.33055 * 7 6 5 9 9 C 1.46901 * 110.99764 * 138.70591 * 8 7 6 10 10 C 1.53000 * 109.46769 * 169.99993 * 9 8 7 11 11 C 1.50706 * 109.46735 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99711 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00219 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.46794 * 90.00022 * 15 13 11 17 17 H 1.48502 * 109.47140 * 210.00005 * 15 13 11 18 18 H 1.48501 * 109.46982 * 330.00118 * 15 13 11 19 19 C 1.47480 * 87.83699 * 27.01095 * 8 7 6 20 20 H 1.09002 * 109.47122 * 299.99653 * 1 2 3 21 21 H 1.08998 * 109.47584 * 60.00218 * 1 2 3 22 22 H 1.08999 * 109.47258 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47252 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47186 * 300.00217 * 3 2 1 25 25 H 1.09005 * 109.47052 * 59.99696 * 3 2 1 26 26 H 1.08997 * 109.47228 * 300.00037 * 4 2 1 27 27 H 1.08996 * 109.46881 * 59.99928 * 4 2 1 28 28 H 1.08995 * 109.47120 * 179.97438 * 4 2 1 29 29 H 1.08999 * 113.38480 * 343.08219 * 6 5 2 30 30 H 1.08994 * 113.47382 * 105.55899 * 7 6 5 31 31 H 1.09003 * 113.47448 * 335.09807 * 7 6 5 32 32 H 1.09002 * 109.47401 * 49.99700 * 9 8 7 33 33 H 1.09001 * 109.46874 * 289.99713 * 9 8 7 34 34 H 1.09001 * 109.47194 * 299.99524 * 10 9 8 35 35 H 1.08992 * 109.47399 * 59.99697 * 10 9 8 36 36 H 0.97000 * 119.99684 * 179.97438 * 14 13 11 37 37 H 1.08999 * 113.47664 * 87.75895 * 19 8 7 38 38 H 1.08994 * 113.47488 * 218.22090 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 6 1.4294 -2.5437 2.7048 8 7 2.0336 -3.8150 2.2646 9 6 2.9821 -4.3214 3.2656 10 6 3.3975 -5.7475 2.8988 11 6 4.3701 -6.2672 3.9260 12 1 4.6629 -5.6427 4.7570 13 6 4.8859 -7.5401 3.8049 14 7 5.7351 -7.9935 4.7010 15 14 4.3788 -8.6207 2.3679 16 1 5.3104 -8.4031 1.2322 17 1 4.4254 -10.0466 2.7802 18 1 2.9976 -8.2713 1.9492 19 6 2.7321 -3.0540 1.2120 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1299 1.4425 0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6766 1.9564 0.8900 26 1 1.6767 -1.7489 -1.2493 27 1 1.6766 -0.2074 -2.1392 28 1 3.1299 -0.7208 -1.2495 29 1 0.7443 -2.2760 0.6133 30 1 0.3909 -2.6427 3.0206 31 1 2.0397 -1.9993 3.4254 32 1 2.5085 -4.3219 4.2473 33 1 3.8635 -3.6805 3.2877 34 1 2.5160 -6.3884 2.8767 35 1 3.8710 -5.7470 1.9171 36 1 6.0977 -8.8891 4.6160 37 1 3.6900 -2.6460 1.5342 38 1 2.7976 -3.5858 0.2628 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687715832.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:50 Heat of formation + Delta-G solvation = -43.527761 kcal Electronic energy + Delta-G solvation = -16090.317503 eV Core-core repulsion = 13546.860791 eV Total energy + Delta-G solvation = -2543.456712 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.39570 -39.07398 -35.56025 -34.17874 -32.90672 -29.14538 -28.29357 -28.13178 -26.86560 -25.17397 -22.30788 -21.20613 -20.68089 -19.01480 -17.80670 -16.93588 -16.52835 -16.30366 -15.93214 -15.36216 -14.93492 -14.77040 -14.32773 -13.99861 -13.88843 -13.50245 -13.28172 -13.15254 -12.92251 -12.78858 -12.75246 -12.62072 -12.41108 -11.88259 -11.78905 -11.61001 -11.51966 -11.42566 -11.20666 -10.78977 -10.38968 -9.95362 -8.32557 -6.37478 1.34367 1.36650 1.50425 2.34913 2.57323 3.02813 3.19549 3.42747 3.91946 3.93567 3.99657 4.09619 4.13428 4.17338 4.39942 4.52706 4.64237 4.68211 4.69975 4.75060 4.80254 4.84602 4.90301 4.97627 4.98304 5.01321 5.16069 5.20524 5.27773 5.38801 5.41110 5.55777 5.59937 6.04413 6.23897 6.38738 6.69407 7.27710 8.84197 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.051732 B = 0.004906 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.124535 B = 5705.980858 C = 5850.699874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 C -0.137 4.137 4 C -0.176 4.176 5 O -0.379 6.379 6 C 0.078 3.922 7 C -0.004 4.004 8 N -0.483 5.483 9 C 0.050 3.950 10 C 0.005 3.995 11 C -0.537 4.537 12 H 0.032 0.968 13 C 0.008 3.992 14 N -0.949 5.949 15 Si 0.953 3.047 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.250 1.250 19 C -0.021 4.021 20 H 0.061 0.939 21 H 0.084 0.916 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.091 0.909 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.032 0.968 34 H 0.021 0.979 35 H 0.013 0.987 36 H 0.268 0.732 37 H 0.063 0.937 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.961 17.465 -13.772 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.055 3.945 3 C -0.194 4.194 4 C -0.233 4.233 5 O -0.298 6.298 6 C 0.019 3.981 7 C -0.133 4.133 8 N -0.206 5.206 9 C -0.078 4.078 10 C -0.032 4.032 11 C -0.576 4.576 12 H 0.050 0.950 13 C -0.189 4.189 14 N -0.590 5.590 15 Si 0.776 3.224 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.174 1.174 19 C -0.150 4.150 20 H 0.080 0.920 21 H 0.103 0.897 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.136 0.864 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.146 16.835 -13.726 24.887 hybrid contribution 0.913 -0.338 0.233 1.001 sum -11.233 16.497 -13.494 24.092 Atomic orbital electron populations 1.22440 0.94452 1.02803 1.03560 1.21820 0.94195 0.93523 0.84981 1.21787 1.01524 0.92744 1.03309 1.22464 1.01759 1.00960 0.98124 1.88025 1.74254 1.23295 1.44234 1.23587 0.96508 0.81047 0.96910 1.24157 1.02127 0.89837 0.97200 1.68834 1.22565 1.20301 1.08945 1.22380 0.93557 0.96821 0.95059 1.19303 0.95168 0.93484 0.95284 1.21423 1.26014 1.00048 1.10083 0.94976 1.25979 0.94341 0.99369 0.99234 1.70060 1.32528 1.18735 1.37650 0.85620 0.80267 0.77443 0.79101 1.19080 1.20533 1.17357 1.24496 0.97817 0.94816 0.97856 0.91959 0.89677 0.92170 0.92641 0.88996 0.92127 0.92471 0.89701 0.92674 0.86367 0.88047 0.91413 0.92064 0.95002 0.96033 0.96867 0.92325 0.91866 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 8.38 71.98 0.60 -1.90 16 2 C 0.09 1.66 1.11 -10.80 -0.01 1.64 16 3 C -0.14 -2.04 8.84 71.98 0.64 -1.40 16 4 C -0.18 -2.86 8.38 71.98 0.60 -2.26 16 5 O -0.38 -9.34 10.04 -148.98 -1.50 -10.83 16 6 C 0.08 1.95 3.16 30.94 0.10 2.04 16 7 C 0.00 -0.13 7.52 83.58 0.63 0.50 16 8 N -0.48 -17.00 6.33 -928.30 -5.88 -22.88 16 9 C 0.05 2.14 4.76 86.30 0.41 2.55 16 10 C 0.01 0.27 4.37 29.85 0.13 0.40 16 11 C -0.54 -32.34 9.66 25.60 0.25 -32.09 16 12 H 0.03 2.11 7.99 -2.91 -0.02 2.08 16 13 C 0.01 0.48 5.47 84.66 0.46 0.94 16 14 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 15 Si 0.95 45.85 27.47 68.60 1.88 47.73 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 19 C -0.02 -0.63 7.55 83.58 0.63 0.00 16 20 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 21 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.06 0.88 6.28 -2.39 -0.01 0.87 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.06 0.98 6.98 -2.39 -0.02 0.96 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.12 2.53 5.56 -2.39 -0.01 2.51 16 30 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.02 7.91 -2.39 -0.02 2.00 16 32 H 0.06 2.63 8.08 -2.39 -0.02 2.61 16 33 H 0.03 1.38 7.30 -2.39 -0.02 1.37 16 34 H 0.02 1.08 7.20 -2.39 -0.02 1.07 16 35 H 0.01 0.64 7.57 -2.39 -0.02 0.63 16 36 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 37 H 0.06 2.10 7.42 -2.39 -0.02 2.08 16 38 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -68.11 301.63 0.19 -67.92 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.94 Total: 8.18 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 4.44 Total: -29.58 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -5.58 Total: -83.43 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -1.50 Total: -10.83 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.73 kcal Total: -68.11 0.19 -67.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687715832.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.393 kcal (2) G-P(sol) polarization free energy of solvation -68.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds