Wall clock time and date at job start Mon Mar 30 2020 03:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47076 * 2 1 4 4 H 1.09004 * 109.46947 * 182.11038 * 3 2 1 5 5 C 1.50700 * 109.47089 * 62.11212 * 3 2 1 6 6 H 1.08001 * 120.00004 * 240.00330 * 5 3 2 7 7 C 1.37883 * 120.00142 * 59.72192 * 5 3 2 8 8 N 1.31517 * 119.99757 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00080 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47346 * 59.99985 * 9 7 5 11 11 H 1.48499 * 109.47251 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47353 * 300.00374 * 9 7 5 13 13 N 1.46898 * 109.47022 * 302.11344 * 3 2 1 14 14 C 1.46898 * 110.99761 * 176.08822 * 13 3 2 15 15 C 1.46902 * 110.99684 * 300.03774 * 13 3 2 16 16 H 1.09004 * 110.45603 * 52.95267 * 15 13 3 17 17 C 1.54474 * 110.51629 * 290.34316 * 15 13 3 18 18 O 1.44638 * 104.69948 * 217.47796 * 17 15 13 19 19 C 1.44427 * 105.37058 * 40.34392 * 18 17 15 20 20 C 1.54482 * 104.80119 * 319.56768 * 19 18 17 21 21 H 1.09008 * 110.50709 * 142.62066 * 20 19 18 22 22 C 1.52990 * 110.51170 * 265.32811 * 20 19 18 23 23 H 1.08998 * 109.47160 * 184.04963 * 1 2 3 24 24 H 1.08995 * 109.47368 * 304.05058 * 1 2 3 25 25 H 1.09001 * 109.47062 * 64.05324 * 1 2 3 26 26 H 1.08996 * 109.47546 * 239.99791 * 2 1 3 27 27 H 1.09006 * 109.47184 * 119.99936 * 2 1 3 28 28 H 0.96996 * 119.99742 * 179.97438 * 8 7 5 29 29 H 1.09005 * 109.47359 * 51.83668 * 14 13 3 30 30 H 1.09002 * 109.46786 * 171.83396 * 14 13 3 31 31 H 1.09000 * 109.47209 * 291.83835 * 14 13 3 32 32 H 1.09005 * 110.37358 * 336.21204 * 17 15 13 33 33 H 1.08996 * 110.37408 * 98.54302 * 17 15 13 34 34 H 1.09000 * 110.37486 * 200.73219 * 19 18 17 35 35 H 1.09003 * 110.37008 * 78.40008 * 19 18 17 36 36 H 1.09005 * 109.47329 * 174.64316 * 22 20 19 37 37 H 1.09003 * 109.47588 * 294.64566 * 22 20 19 38 38 H 1.09001 * 109.47047 * 54.64394 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 -0.0378 5 6 1.5808 2.1376 1.2558 6 1 0.9570 3.0167 1.1892 7 6 1.9524 1.6480 2.4900 8 7 2.7079 0.5745 2.5713 9 14 1.3827 2.5092 4.0466 10 1 -0.1015 2.5142 4.0947 11 1 1.9144 1.7909 5.2326 12 1 1.8827 3.9075 4.0500 13 7 1.5090 2.1496 -1.1731 14 6 1.9026 3.5648 -1.1574 15 6 1.9365 1.4980 -2.4184 16 1 1.6887 0.4367 -2.3975 17 6 3.4524 1.6958 -2.6402 18 8 3.5932 1.8819 -4.0676 19 6 2.4802 2.7162 -4.4565 20 6 1.2826 2.1826 -3.6395 21 1 0.6423 3.0046 -3.3192 22 6 0.4841 1.1674 -4.4595 23 1 -0.3633 -1.0251 0.0726 24 1 -0.3634 0.5754 0.8514 25 1 -0.3633 0.4496 -0.9241 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.9696 0.2303 3.4395 29 1 2.9814 3.6404 -1.0207 30 1 1.6226 4.0302 -2.1024 31 1 1.3960 4.0737 -0.3374 32 1 3.8018 2.5797 -2.1065 33 1 4.0019 0.8128 -2.3142 34 1 2.2859 2.6161 -5.5244 35 1 2.6794 3.7573 -4.2023 36 1 -0.2978 0.7321 -3.8371 37 1 0.0308 1.6675 -5.3154 38 1 1.1503 0.3791 -4.8103 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688195425.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:30 Heat of formation + Delta-G solvation = -42.166766 kcal Electronic energy + Delta-G solvation = -17316.367755 eV Core-core repulsion = 14772.970061 eV Total energy + Delta-G solvation = -2543.397695 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.75227 -36.47223 -33.38787 -32.23670 -30.94441 -28.37773 -26.49427 -25.82887 -24.94180 -23.06882 -21.52959 -19.89546 -18.57727 -16.19142 -16.06519 -15.73183 -15.04909 -14.74124 -13.94197 -13.58859 -13.46986 -13.21565 -12.58087 -12.24543 -12.10744 -11.94268 -11.76416 -11.45512 -11.12898 -10.92726 -10.86385 -10.56435 -10.46167 -10.44763 -10.14433 -9.94903 -9.65639 -9.44096 -9.40368 -8.80654 -8.41539 -7.13468 -6.01976 -4.05972 3.30433 3.35462 3.37856 4.24051 4.40711 4.89280 5.03410 5.11447 5.28257 5.36915 5.49806 5.57692 5.71404 5.86655 5.95940 6.02415 6.11339 6.20423 6.22798 6.32733 6.42299 6.47909 6.54895 6.62566 6.75521 6.79115 7.06082 7.12178 7.31673 7.39023 7.63950 7.73864 7.82033 8.13922 8.32040 8.57344 8.98854 9.58096 11.04242 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038635 B = 0.008167 C = 0.007824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.559929 B = 3427.482135 C = 3577.817360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.521 5.521 14 C 0.033 3.967 15 C 0.057 3.943 16 H 0.095 0.905 17 C 0.010 3.990 18 O -0.382 6.382 19 C 0.047 3.953 20 C -0.123 4.123 21 H 0.091 0.909 22 C -0.136 4.136 23 H 0.015 0.985 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.012 0.988 27 H 0.093 0.907 28 H 0.261 0.739 29 H 0.018 0.982 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 2.280 -10.028 10.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.151 4.151 3 C 0.110 3.890 4 H 0.017 0.983 5 C -0.537 4.537 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.245 5.245 14 C -0.116 4.116 15 C -0.053 4.053 16 H 0.113 0.887 17 C -0.068 4.068 18 O -0.300 6.300 19 C -0.030 4.030 20 C -0.142 4.142 21 H 0.109 0.891 22 C -0.193 4.193 23 H 0.034 0.966 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.450 2.047 -9.984 10.482 hybrid contribution 0.526 0.529 1.075 1.309 sum -1.924 2.576 -8.909 9.471 Atomic orbital electron populations 1.21460 0.97264 0.97587 1.01482 1.21587 0.95205 0.98202 1.00108 1.19309 0.92534 0.90857 0.86309 0.98297 1.21037 1.31183 1.11876 0.89642 0.92031 1.24901 0.95209 0.95050 0.98942 1.69860 1.36413 1.22274 1.24554 0.86628 0.79054 0.79537 0.82585 1.20261 1.21402 1.20437 1.62345 1.59079 1.01672 1.01384 1.22272 0.98098 0.90763 1.00423 1.23182 0.91088 1.00149 0.90883 0.88676 1.24297 0.99197 1.01881 0.81467 1.89072 1.47449 1.70469 1.23039 1.23470 0.86053 0.94149 0.99303 1.22579 0.97124 0.99305 0.95232 0.89061 1.21739 0.99789 0.98681 0.99126 0.96581 0.92258 0.94091 0.96904 0.88861 0.92933 0.96347 0.93773 0.90911 0.91712 0.89514 0.89718 0.92924 0.92089 0.93105 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.52 37.16 0.35 -2.26 16 2 C -0.11 -2.64 5.10 -26.73 -0.14 -2.77 16 3 C 0.22 5.17 1.57 -68.86 -0.11 5.06 16 4 H 0.00 -0.01 7.47 -51.93 -0.39 -0.40 16 5 C -0.50 -13.04 6.78 -34.44 -0.23 -13.27 16 6 H 0.06 1.61 6.43 -52.49 -0.34 1.28 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -24.79 11.29 55.43 0.63 -24.17 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.52 -10.59 3.82 -226.41 -0.87 -11.45 16 14 C 0.03 0.62 8.19 60.06 0.49 1.11 16 15 C 0.06 1.02 2.59 -66.15 -0.17 0.85 16 16 H 0.10 1.79 5.67 -51.93 -0.29 1.50 16 17 C 0.01 0.18 6.19 37.93 0.23 0.41 16 18 O -0.38 -6.56 11.65 -35.23 -0.41 -6.97 16 19 C 0.05 0.67 7.10 37.94 0.27 0.94 16 20 C -0.12 -1.82 2.72 -89.05 -0.24 -2.06 16 21 H 0.09 1.36 6.61 -51.92 -0.34 1.02 16 22 C -0.14 -1.76 8.94 37.15 0.33 -1.42 16 23 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.06 1.40 7.15 -51.93 -0.37 1.03 16 25 H 0.04 0.84 7.68 -51.93 -0.40 0.44 16 26 H 0.01 0.27 6.38 -51.93 -0.33 -0.06 16 27 H 0.09 2.45 6.00 -51.93 -0.31 2.14 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.02 0.36 6.34 -51.93 -0.33 0.03 16 30 H 0.04 0.71 5.94 -51.93 -0.31 0.40 16 31 H 0.07 1.45 6.56 -51.93 -0.34 1.11 16 32 H 0.06 1.21 5.63 -51.93 -0.29 0.92 16 33 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.08 1.02 7.87 -51.93 -0.41 0.61 16 35 H 0.05 0.71 8.02 -51.93 -0.42 0.29 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 284.40 15.07 4.29 4.29 Total: -1.00 -27.18 284.40 -6.81 -33.99 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.12 Total: 0.28 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 0.70 Total: -11.90 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.24 Total: -35.62 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.41 Total: -6.97 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -27.18 -6.81 -33.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688195425.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.179 kcal (2) G-P(sol) polarization free energy of solvation -27.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds