Wall clock time and date at job start Mon Mar 30 2020 03:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 H 1.09001 * 109.46778 * 306.00624 * 3 2 1 5 5 C 1.50698 * 109.46942 * 186.00987 * 3 2 1 6 6 H 1.07996 * 120.00151 * 239.99903 * 5 3 2 7 7 C 1.37881 * 120.00202 * 59.99276 * 5 3 2 8 8 N 1.31520 * 119.99823 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00219 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47137 * 60.00027 * 9 7 5 11 11 H 1.48496 * 109.47358 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47148 * 300.00374 * 9 7 5 13 13 N 1.46899 * 109.47378 * 66.00805 * 3 2 1 14 14 C 1.46900 * 110.99831 * 68.78629 * 13 3 2 15 15 C 1.46894 * 110.99827 * 192.73771 * 13 3 2 16 16 H 1.08999 * 110.46042 * 317.88763 * 15 13 3 17 17 C 1.54477 * 110.51422 * 195.28398 * 15 13 3 18 18 O 1.44424 * 104.80705 * 217.37793 * 17 15 13 19 19 C 1.44425 * 105.27138 * 40.50998 * 18 17 15 20 20 C 1.54478 * 104.80474 * 319.48717 * 19 18 17 21 21 H 1.09002 * 110.50994 * 265.33157 * 20 19 18 22 22 C 1.52999 * 110.51122 * 142.62847 * 20 19 18 23 23 H 1.09000 * 109.47384 * 184.49491 * 1 2 3 24 24 H 1.08998 * 109.47497 * 304.49601 * 1 2 3 25 25 H 1.09001 * 109.46666 * 64.49864 * 1 2 3 26 26 H 1.08996 * 109.47476 * 239.99336 * 2 1 3 27 27 H 1.09002 * 109.46807 * 119.99242 * 2 1 3 28 28 H 0.96999 * 119.99812 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.46939 * 191.88899 * 14 13 3 30 30 H 1.08997 * 109.47252 * 311.88093 * 14 13 3 31 31 H 1.08998 * 109.47153 * 71.88654 * 14 13 3 32 32 H 1.09010 * 110.36694 * 336.20917 * 17 15 13 33 33 H 1.08996 * 110.37744 * 98.54213 * 17 15 13 34 34 H 1.09008 * 110.37079 * 200.65649 * 19 18 17 35 35 H 1.09003 * 110.46833 * 78.37382 * 19 18 17 36 36 H 1.09011 * 109.46963 * 296.94465 * 22 20 19 37 37 H 1.08998 * 109.47159 * 56.93909 * 22 20 19 38 38 H 1.08999 * 109.47268 * 176.94468 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9864 -0.8314 5 6 3.5396 1.4451 -0.1488 6 1 4.1577 1.8852 0.6198 7 6 4.1226 0.8856 -1.2660 8 7 3.3698 0.3501 -2.2021 9 14 5.9815 0.8882 -1.4500 10 1 6.5921 0.1468 -0.3174 11 1 6.3532 0.2323 -2.7294 12 1 6.4770 2.2881 -1.4498 13 7 1.6723 2.0919 1.2653 14 6 2.4224 1.5167 2.3897 15 6 1.8713 3.5453 1.1883 16 1 2.8076 3.7752 0.6798 17 6 1.8555 4.1695 2.6013 18 8 1.1783 5.4346 2.4384 19 6 0.0872 5.1679 1.5306 20 6 0.6813 4.2174 0.4677 21 1 1.0281 4.7816 -0.3980 22 6 -0.3519 3.1700 0.0478 23 1 -0.3634 -1.0245 0.0805 24 1 -0.3634 0.5820 0.8469 25 1 -0.3633 0.4425 -0.9276 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 3.7799 -0.0432 -2.9882 29 1 1.9879 1.8586 3.3292 30 1 2.3726 0.4289 2.3411 31 1 3.4631 1.8356 2.3333 32 1 1.3051 3.5306 3.2921 33 1 2.8733 4.3270 2.9580 34 1 -0.2535 6.0927 1.0647 35 1 -0.7358 4.6831 2.0559 36 1 -0.6106 2.5502 0.9064 37 1 -1.2469 3.6704 -0.3219 38 1 0.0657 2.5432 -0.7402 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688195426.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:32 Heat of formation + Delta-G solvation = -37.841274 kcal Electronic energy + Delta-G solvation = -17488.524556 eV Core-core repulsion = 14945.314429 eV Total energy + Delta-G solvation = -2543.210127 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.51406 -36.66862 -33.07631 -32.15621 -31.36005 -28.02349 -26.69365 -25.65140 -24.92420 -22.79014 -21.46682 -19.37378 -18.69752 -16.56851 -16.08766 -15.63799 -15.03376 -14.71529 -13.98068 -13.61531 -13.15082 -13.01171 -12.54355 -12.26815 -11.96979 -11.73655 -11.56744 -11.25656 -11.10011 -10.85536 -10.74952 -10.51461 -10.49503 -10.37753 -10.01442 -9.85193 -9.58277 -9.41883 -9.25502 -9.01111 -8.33641 -7.14165 -6.01463 -4.14296 3.25784 3.31266 3.33906 4.34845 4.37364 5.03827 5.12503 5.23383 5.28630 5.48041 5.70116 5.83912 5.98730 6.08650 6.10360 6.18456 6.23795 6.32043 6.39927 6.46175 6.53590 6.64477 6.68006 6.75299 6.83519 6.98549 7.12865 7.16226 7.22113 7.36088 7.60766 7.74627 7.95439 8.12551 8.29898 8.45444 8.95210 9.52969 10.97720 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026882 B = 0.010121 C = 0.008784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.325392 B = 2765.939523 C = 3186.992280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.209 3.791 4 H 0.048 0.952 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.524 5.524 14 C 0.030 3.970 15 C 0.060 3.940 16 H 0.064 0.936 17 C 0.047 3.953 18 O -0.386 6.386 19 C 0.052 3.948 20 C -0.113 4.113 21 H 0.071 0.929 22 C -0.134 4.134 23 H 0.023 0.977 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.092 0.908 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 4.013 5.504 8.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C 0.103 3.897 4 H 0.065 0.935 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.249 5.249 14 C -0.118 4.118 15 C -0.050 4.050 16 H 0.082 0.918 17 C -0.030 4.030 18 O -0.304 6.304 19 C -0.025 4.025 20 C -0.132 4.132 21 H 0.090 0.910 22 C -0.191 4.191 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.110 0.890 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.715 4.038 5.503 8.902 hybrid contribution 2.036 -0.121 -0.476 2.094 sum -3.679 3.917 5.027 7.358 Atomic orbital electron populations 1.21843 0.98927 0.98559 1.00555 1.21597 0.92250 0.99192 1.01854 1.19438 0.93114 0.91282 0.85823 0.93468 1.21741 0.93042 1.38513 1.05151 0.92660 1.24893 0.97676 0.95039 0.95735 1.69858 1.34742 1.38480 1.09236 0.86758 0.86287 0.78213 0.77350 1.20363 1.21245 1.20412 1.62611 1.55058 1.00836 1.06390 1.22245 0.96109 1.00433 0.93056 1.22844 0.97536 0.90365 0.94258 0.91818 1.23666 0.97144 0.84744 0.97476 1.89033 1.44326 1.30664 1.66386 1.23479 0.89967 0.98791 0.90260 1.22434 0.96559 0.96529 0.97723 0.91004 1.21896 0.96070 0.98153 1.02992 0.95761 0.92903 0.94199 0.89022 0.94971 0.92839 0.93980 0.91656 0.95530 0.91639 0.90003 0.90116 0.92511 0.90992 0.95002 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.74 37.16 0.32 -2.42 16 2 C -0.11 -2.51 5.24 -26.73 -0.14 -2.65 16 3 C 0.21 4.86 0.97 -68.87 -0.07 4.79 16 4 H 0.05 1.21 5.54 -51.93 -0.29 0.92 16 5 C -0.55 -14.13 7.02 -34.44 -0.24 -14.37 16 6 H 0.06 1.45 6.10 -52.49 -0.32 1.13 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.30 11.29 55.43 0.63 -23.67 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.52 -10.37 2.52 -226.42 -0.57 -10.94 16 14 C 0.03 0.56 7.97 60.06 0.48 1.04 16 15 C 0.06 1.13 2.79 -66.15 -0.18 0.94 16 16 H 0.06 1.38 7.20 -51.93 -0.37 1.01 16 17 C 0.05 0.78 6.14 37.93 0.23 1.01 16 18 O -0.39 -6.62 11.65 -35.23 -0.41 -7.03 16 19 C 0.05 0.78 7.18 37.93 0.27 1.06 16 20 C -0.11 -1.93 3.56 -89.05 -0.32 -2.24 16 21 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 22 C -0.13 -2.24 7.24 37.16 0.27 -1.97 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.97 6.12 -51.93 -0.32 0.66 16 25 H 0.04 0.77 7.48 -51.93 -0.39 0.38 16 26 H 0.09 2.36 5.93 -51.93 -0.31 2.05 16 27 H 0.03 0.72 6.24 -51.93 -0.32 0.40 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.04 0.68 6.34 -51.93 -0.33 0.35 16 30 H 0.06 1.27 6.09 -51.93 -0.32 0.95 16 31 H 0.03 0.53 6.49 -51.93 -0.34 0.19 16 32 H 0.07 1.05 6.47 -51.92 -0.34 0.72 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 35 H 0.06 0.81 7.87 -51.93 -0.41 0.40 16 36 H 0.07 1.23 6.04 -51.92 -0.31 0.91 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 1.43 4.25 -51.93 -0.22 1.21 16 LS Contribution 275.64 15.07 4.15 4.15 Total: -1.00 -26.58 275.64 -6.52 -33.10 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.83 Total: 1.60 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 0.53 Total: -13.07 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.05 Total: -34.62 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.41 Total: -7.03 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.58 -6.52 -33.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688195426.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.745 kcal (2) G-P(sol) polarization free energy of solvation -26.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds