Wall clock time and date at job start Mon Mar 30 2020 03:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46934 * 2 1 4 4 H 1.09001 * 109.46778 * 306.00624 * 3 2 1 5 5 C 1.50698 * 109.46942 * 186.00987 * 3 2 1 6 6 H 1.07996 * 120.00151 * 239.99903 * 5 3 2 7 7 C 1.37881 * 120.00202 * 59.99276 * 5 3 2 8 8 N 1.31520 * 119.99823 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00219 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47137 * 60.00027 * 9 7 5 11 11 H 1.48496 * 109.47358 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47148 * 300.00374 * 9 7 5 13 13 N 1.46899 * 109.47378 * 66.00805 * 3 2 1 14 14 C 1.46900 * 110.99831 * 68.78629 * 13 3 2 15 15 C 1.46894 * 110.99827 * 192.73771 * 13 3 2 16 16 H 1.08999 * 110.46042 * 317.88763 * 15 13 3 17 17 C 1.54477 * 110.51422 * 195.28398 * 15 13 3 18 18 O 1.44424 * 104.80705 * 217.37793 * 17 15 13 19 19 C 1.44425 * 105.27138 * 40.50998 * 18 17 15 20 20 C 1.54478 * 104.80474 * 319.48717 * 19 18 17 21 21 H 1.09002 * 110.50994 * 265.33157 * 20 19 18 22 22 C 1.52999 * 110.51122 * 142.62847 * 20 19 18 23 23 H 1.09000 * 109.47384 * 184.49491 * 1 2 3 24 24 H 1.08998 * 109.47497 * 304.49601 * 1 2 3 25 25 H 1.09001 * 109.46666 * 64.49864 * 1 2 3 26 26 H 1.08996 * 109.47476 * 239.99336 * 2 1 3 27 27 H 1.09002 * 109.46807 * 119.99242 * 2 1 3 28 28 H 0.96999 * 119.99812 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.46939 * 191.88899 * 14 13 3 30 30 H 1.08997 * 109.47252 * 311.88093 * 14 13 3 31 31 H 1.08998 * 109.47153 * 71.88654 * 14 13 3 32 32 H 1.09010 * 110.36694 * 336.20917 * 17 15 13 33 33 H 1.08996 * 110.37744 * 98.54213 * 17 15 13 34 34 H 1.09008 * 110.37079 * 200.65649 * 19 18 17 35 35 H 1.09003 * 110.46833 * 78.37382 * 19 18 17 36 36 H 1.09011 * 109.46963 * 296.94465 * 22 20 19 37 37 H 1.08998 * 109.47159 * 56.93909 * 22 20 19 38 38 H 1.08999 * 109.47268 * 176.94468 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9864 -0.8314 5 6 3.5396 1.4451 -0.1488 6 1 4.1577 1.8852 0.6198 7 6 4.1226 0.8856 -1.2660 8 7 3.3698 0.3501 -2.2021 9 14 5.9815 0.8882 -1.4500 10 1 6.5921 0.1468 -0.3174 11 1 6.3532 0.2323 -2.7294 12 1 6.4770 2.2881 -1.4498 13 7 1.6723 2.0919 1.2653 14 6 2.4224 1.5167 2.3897 15 6 1.8713 3.5453 1.1883 16 1 2.8076 3.7752 0.6798 17 6 1.8555 4.1695 2.6013 18 8 1.1783 5.4346 2.4384 19 6 0.0872 5.1679 1.5306 20 6 0.6813 4.2174 0.4677 21 1 1.0281 4.7816 -0.3980 22 6 -0.3519 3.1700 0.0478 23 1 -0.3634 -1.0245 0.0805 24 1 -0.3634 0.5820 0.8469 25 1 -0.3633 0.4425 -0.9276 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 3.7799 -0.0432 -2.9882 29 1 1.9879 1.8586 3.3292 30 1 2.3726 0.4289 2.3411 31 1 3.4631 1.8356 2.3333 32 1 1.3051 3.5306 3.2921 33 1 2.8733 4.3270 2.9580 34 1 -0.2535 6.0927 1.0647 35 1 -0.7358 4.6831 2.0559 36 1 -0.6106 2.5502 0.9064 37 1 -1.2469 3.6704 -0.3219 38 1 0.0657 2.5432 -0.7402 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688195426.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:32 Heat of formation + Delta-G solvation = -53.553968 kcal Electronic energy + Delta-G solvation = -17489.205910 eV Core-core repulsion = 14945.314429 eV Total energy + Delta-G solvation = -2543.891481 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.94487 -38.27297 -34.85024 -33.62949 -33.14756 -29.54579 -28.41989 -26.98930 -26.61156 -24.53683 -22.84534 -21.09483 -20.27363 -18.42905 -17.52991 -17.19014 -16.66709 -16.25070 -15.62147 -15.17035 -14.81051 -14.57641 -14.12791 -13.79054 -13.54842 -13.22780 -13.15277 -12.90987 -12.86576 -12.54993 -12.51116 -12.19590 -12.01848 -11.85965 -11.62765 -11.41511 -11.30998 -11.02037 -10.90563 -10.60663 -10.32119 -8.88126 -8.02134 -6.23297 1.35690 1.37417 1.43539 2.39407 3.03326 3.16309 3.49108 3.76206 3.97844 4.14403 4.36817 4.46808 4.53015 4.70640 4.73524 4.78851 4.82276 4.86123 4.87119 4.96796 4.98637 5.11912 5.16638 5.20078 5.32691 5.43435 5.50545 5.56584 5.67830 5.69673 5.80149 5.94332 6.12668 6.22670 6.42093 6.70597 6.98752 7.46714 8.91940 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026882 B = 0.010121 C = 0.008784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.325392 B = 2765.939523 C = 3186.992280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.106 4.106 3 C 0.219 3.781 4 H 0.022 0.978 5 C -0.554 4.554 6 H 0.047 0.953 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.939 3.061 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.513 5.513 14 C 0.032 3.968 15 C 0.054 3.946 16 H 0.027 0.973 17 C 0.056 3.944 18 O -0.396 6.396 19 C 0.057 3.943 20 C -0.116 4.116 21 H 0.061 0.939 22 C -0.124 4.124 23 H 0.040 0.960 24 H 0.065 0.935 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.011 0.989 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.225 4.617 6.824 10.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C 0.112 3.888 4 H 0.040 0.960 5 C -0.593 4.593 6 H 0.065 0.935 7 C -0.176 4.176 8 N -0.547 5.547 9 Si 0.766 3.234 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.237 5.237 14 C -0.117 4.117 15 C -0.056 4.056 16 H 0.045 0.955 17 C -0.021 4.021 18 O -0.315 6.315 19 C -0.019 4.019 20 C -0.135 4.135 21 H 0.080 0.920 22 C -0.181 4.181 23 H 0.059 0.941 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.663 4.647 6.834 10.616 hybrid contribution 2.327 -0.277 -0.884 2.505 sum -4.336 4.370 5.950 8.562 Atomic orbital electron populations 1.21690 0.96154 0.99833 1.00833 1.21442 0.94685 0.98290 1.00063 1.19184 0.91327 0.91579 0.86717 0.95989 1.22056 0.94720 1.37767 1.04792 0.93469 1.25531 1.01173 0.95151 0.95773 1.69981 1.35956 1.39262 1.09543 0.85911 0.82195 0.77986 0.77314 1.19976 1.20962 1.20454 1.62591 1.54601 1.01333 1.05149 1.22287 0.95425 0.99953 0.93999 1.22875 0.96809 0.89905 0.96030 0.95527 1.23585 0.97851 0.84765 0.95885 1.89030 1.45010 1.30712 1.66748 1.23575 0.89549 0.99461 0.89334 1.22448 0.96068 0.96927 0.98052 0.92004 1.21760 0.96674 0.97753 1.01944 0.94098 0.91654 0.94654 0.92279 0.95193 0.93037 0.90638 0.92460 0.97087 0.90221 0.89515 0.87842 0.90811 0.91010 0.92454 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.74 71.98 0.63 -4.18 16 2 C -0.11 -4.86 5.24 30.60 0.16 -4.70 16 3 C 0.22 10.31 0.97 44.17 0.04 10.35 16 4 H 0.02 1.17 5.54 -2.39 -0.01 1.16 16 5 C -0.55 -29.31 7.02 25.60 0.18 -29.13 16 6 H 0.05 2.52 6.10 -2.91 -0.02 2.50 16 7 C 0.02 1.28 5.29 84.65 0.45 1.73 16 8 N -0.91 -51.04 11.29 21.45 0.24 -50.79 16 9 Si 0.94 43.43 29.54 68.60 2.03 45.46 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 N -0.51 -19.96 2.52 -870.27 -2.20 -22.16 16 14 C 0.03 1.15 7.97 127.69 1.02 2.17 16 15 C 0.05 1.99 2.79 45.93 0.13 2.12 16 16 H 0.03 1.19 7.20 -2.39 -0.02 1.17 16 17 C 0.06 1.75 6.14 72.48 0.44 2.20 16 18 O -0.40 -12.57 11.65 -148.98 -1.74 -14.30 16 19 C 0.06 1.55 7.18 72.48 0.52 2.07 16 20 C -0.12 -3.79 3.56 -9.78 -0.03 -3.83 16 21 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 22 C -0.12 -3.96 7.24 71.98 0.52 -3.44 16 23 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.06 2.28 6.12 -2.39 -0.01 2.27 16 25 H 0.03 1.34 7.48 -2.39 -0.02 1.32 16 26 H 0.06 3.11 5.93 -2.39 -0.01 3.10 16 27 H 0.03 1.34 6.24 -2.39 -0.01 1.33 16 28 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.08 2.24 6.34 -2.38 -0.02 2.22 16 30 H 0.06 2.17 6.09 -2.39 -0.01 2.15 16 31 H 0.01 0.42 6.49 -2.39 -0.02 0.40 16 32 H 0.08 2.29 6.47 -2.38 -0.02 2.27 16 33 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 35 H 0.07 1.79 7.87 -2.39 -0.02 1.77 16 36 H 0.07 2.27 6.04 -2.38 -0.01 2.26 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.04 1.72 4.25 -2.39 -0.01 1.71 16 Total: -1.00 -57.07 275.64 3.43 -53.64 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.04 Total: 12.80 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 4.06 Total: -24.64 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.95 Total: -72.95 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -1.74 Total: -14.30 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -57.07 3.43 -53.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688195426.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.082 kcal (2) G-P(sol) polarization free energy of solvation -57.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds