Wall clock time and date at job start Mon Mar 30 2020 03:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47405 * 2 1 4 4 H 1.08990 * 110.56409 * 50.86341 * 3 2 1 5 5 C 1.54478 * 110.50628 * 288.18824 * 3 2 1 6 6 O 1.44426 * 104.80423 * 217.37543 * 5 3 2 7 7 C 1.44430 * 105.27528 * 40.51124 * 6 5 3 8 8 C 1.54480 * 104.80098 * 319.49197 * 7 6 5 9 9 H 1.09002 * 110.51096 * 265.19086 * 8 7 6 10 10 N 1.46902 * 110.51150 * 142.62174 * 8 7 6 11 11 C 1.46901 * 110.99802 * 322.06931 * 10 8 7 12 12 C 1.46899 * 110.99844 * 86.01844 * 10 8 7 13 13 H 1.08994 * 109.47380 * 300.64307 * 12 10 8 14 14 C 1.53002 * 109.47068 * 60.64315 * 12 10 8 15 15 C 1.50704 * 109.47075 * 180.63941 * 12 10 8 16 16 H 1.07997 * 119.99950 * 0.02562 * 15 12 10 17 17 C 1.37876 * 120.00180 * 179.97438 * 15 12 10 18 18 N 1.31510 * 120.00425 * 180.02562 * 17 15 12 19 19 Si 1.86808 * 120.00010 * 0.02562 * 17 15 12 20 20 H 1.48496 * 109.47071 * 89.99592 * 19 17 15 21 21 H 1.48491 * 109.47062 * 210.00123 * 19 17 15 22 22 H 1.48499 * 109.46849 * 329.99866 * 19 17 15 23 23 H 1.09001 * 109.46811 * 60.00419 * 1 2 3 24 24 H 1.09005 * 109.47314 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47561 * 300.00609 * 1 2 3 26 26 H 1.08999 * 109.47561 * 239.99391 * 2 1 3 27 27 H 1.09002 * 109.47333 * 119.99543 * 2 1 3 28 28 H 1.08997 * 110.37339 * 98.54601 * 5 3 2 29 29 H 1.09008 * 110.46793 * 336.25445 * 5 3 2 30 30 H 1.08991 * 110.37356 * 200.66053 * 7 6 5 31 31 H 1.09000 * 110.46616 * 78.36397 * 7 6 5 32 32 H 1.09003 * 109.46424 * 200.67824 * 11 10 8 33 33 H 1.09003 * 109.47090 * 320.67108 * 11 10 8 34 34 H 1.08998 * 109.47317 * 80.67522 * 11 10 8 35 35 H 1.08994 * 109.47255 * 292.89923 * 14 12 10 36 36 H 1.08999 * 109.47014 * 52.90059 * 14 12 10 37 37 H 1.09004 * 109.46984 * 172.89860 * 14 12 10 38 38 H 0.96997 * 120.00605 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5604 2.0182 0.7915 5 6 1.7946 2.1033 -1.3746 6 8 2.9561 2.9321 -1.5983 7 6 4.0773 2.1495 -1.1330 8 6 3.5762 1.4736 0.1626 9 1 3.8582 2.0634 1.0348 10 7 4.1100 0.1093 0.2711 11 6 4.1510 -0.5459 -1.0431 12 6 5.4378 0.1120 0.8996 13 1 6.1204 0.7181 0.3041 14 6 5.3335 0.6974 2.3093 15 6 5.9587 -1.2999 0.9793 16 1 5.3632 -2.1174 0.6005 17 6 7.1959 -1.5480 1.5348 18 7 7.6508 -2.7800 1.6039 19 14 8.2264 -0.1339 2.1893 20 1 7.9044 0.0918 3.6213 21 1 9.6671 -0.4665 2.0523 22 1 7.9266 1.0970 1.4146 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.8924 2.7142 -1.3463 29 1 1.7142 1.3447 -2.1533 30 1 4.9284 2.7958 -0.9190 31 1 4.3498 1.3967 -1.8726 32 1 4.1894 -1.6270 -0.9089 33 1 3.2577 -0.2816 -1.6089 34 1 5.0363 -0.2156 -1.5864 35 1 5.0784 1.7551 2.2456 36 1 4.5587 0.1697 2.8655 37 1 6.2891 0.5843 2.8213 38 1 8.5214 -2.9545 1.9944 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688210977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:17 Heat of formation + Delta-G solvation = -24.152255 kcal Electronic energy + Delta-G solvation = -17260.644423 eV Core-core repulsion = 14718.027896 eV Total energy + Delta-G solvation = -2542.616527 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.04790 -36.46905 -34.23090 -32.56622 -30.38243 -29.10773 -27.82558 -25.33543 -24.55614 -23.66759 -21.40661 -20.29822 -18.58812 -16.80035 -16.45153 -15.51741 -15.44440 -14.95430 -14.38594 -13.72356 -13.60733 -13.14247 -12.99409 -12.65731 -12.48714 -12.24096 -11.96318 -11.71024 -11.36376 -11.24099 -10.85450 -10.77563 -10.53853 -10.26853 -10.21666 -10.09565 -9.99754 -9.49022 -9.47826 -9.05124 -8.60176 -7.36183 -6.10119 -4.09066 3.23463 3.33787 3.35887 4.13232 4.36302 4.76725 4.91045 4.97610 5.18074 5.23103 5.36802 5.45375 5.51584 5.58309 5.67645 5.86449 5.92012 5.98440 6.04052 6.07336 6.18988 6.25830 6.29953 6.36655 6.44309 6.51877 6.63655 6.75520 6.80473 6.85610 6.99130 7.22257 7.53524 7.89679 8.01834 8.60639 8.96412 9.51728 11.02521 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035722 B = 0.008507 C = 0.007790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.633892 B = 3290.698956 C = 3593.388673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.111 4.111 4 H 0.078 0.922 5 C 0.048 3.952 6 O -0.382 6.382 7 C 0.007 3.993 8 C 0.046 3.954 9 H 0.092 0.908 10 N -0.509 5.509 11 C 0.033 3.967 12 C 0.180 3.820 13 H -0.002 1.002 14 C -0.147 4.147 15 C -0.505 4.505 16 H 0.083 0.917 17 C 0.070 3.930 18 N -0.898 5.898 19 Si 0.885 3.115 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.269 1.269 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.024 0.976 35 H 0.026 0.974 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.498 8.065 -3.757 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C -0.130 4.130 4 H 0.096 0.904 5 C -0.029 4.029 6 O -0.300 6.300 7 C -0.071 4.071 8 C -0.064 4.064 9 H 0.110 0.890 10 N -0.233 5.233 11 C -0.115 4.115 12 C 0.073 3.927 13 H 0.015 0.985 14 C -0.204 4.204 15 C -0.544 4.544 16 H 0.101 0.899 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.225 1.225 22 H -0.194 1.194 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.645 7.883 -3.490 13.698 hybrid contribution 1.288 0.997 0.081 1.631 sum -9.357 8.880 -3.409 13.342 Atomic orbital electron populations 1.21876 0.97262 1.01154 1.00860 1.21609 0.93426 0.95120 1.04608 1.22519 0.95657 0.97751 0.97063 0.90390 1.23545 0.89358 0.93951 0.96080 1.89054 1.16207 1.40056 1.84676 1.24353 0.90155 0.95650 0.96992 1.23223 0.94144 0.91668 0.97344 0.89018 1.62177 1.26875 1.13107 1.21103 1.22451 0.98297 1.00869 0.89879 1.19765 0.84669 0.97584 0.90674 0.98456 1.22228 1.00906 0.97535 0.99730 1.20959 1.02167 0.91220 1.40014 0.89918 1.24930 0.97388 0.95307 0.95551 1.69871 1.19424 1.18943 1.45432 0.86899 0.78834 0.83218 0.79466 1.20540 1.22485 1.19438 0.93602 0.93008 0.93257 0.91105 0.89527 0.89840 0.92573 0.89826 0.90999 0.90711 0.92918 0.95745 0.95465 0.92006 0.93733 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.80 37.15 0.36 -1.37 16 2 C -0.11 -1.52 4.13 -26.73 -0.11 -1.63 16 3 C -0.11 -1.55 2.91 -89.05 -0.26 -1.81 16 4 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.05 0.63 6.32 37.93 0.24 0.87 16 6 O -0.38 -6.12 11.65 -35.23 -0.41 -6.53 16 7 C 0.01 0.11 6.79 37.93 0.26 0.37 16 8 C 0.05 0.77 2.96 -66.14 -0.20 0.58 16 9 H 0.09 1.57 5.73 -51.93 -0.30 1.28 16 10 N -0.51 -9.85 3.23 -226.41 -0.73 -10.58 16 11 C 0.03 0.60 6.43 60.07 0.39 0.98 16 12 C 0.18 4.13 1.51 -68.86 -0.10 4.02 16 13 H 0.00 -0.05 7.15 -51.93 -0.37 -0.42 16 14 C -0.15 -3.15 8.37 37.16 0.31 -2.84 16 15 C -0.51 -13.71 8.62 -34.44 -0.30 -14.00 16 16 H 0.08 2.43 6.76 -52.49 -0.35 2.08 16 17 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 18 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 19 Si 0.89 21.70 24.42 -169.99 -4.15 17.55 16 20 H -0.28 -6.67 6.82 56.52 0.39 -6.28 16 21 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 23 H 0.04 0.46 7.69 -51.93 -0.40 0.07 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.01 4.88 -51.93 -0.25 0.75 16 27 H 0.09 1.40 7.56 -51.93 -0.39 1.00 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.72 7.42 -51.92 -0.39 0.33 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.07 1.18 5.09 -51.93 -0.26 0.92 16 32 H 0.07 1.48 6.92 -51.93 -0.36 1.12 16 33 H 0.05 0.82 4.41 -51.93 -0.23 0.59 16 34 H 0.02 0.46 6.93 -51.93 -0.36 0.10 16 35 H 0.03 0.50 6.37 -51.93 -0.33 0.17 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.04 1.01 3.22 -51.93 -0.17 0.84 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 274.28 15.07 4.13 4.13 Total: -1.00 -28.85 274.28 -5.78 -34.63 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.89 Total: -0.02 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 0.50 Total: -12.95 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.04 Total: -36.81 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.41 Total: -6.53 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.15 Total: 17.55 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.85 -5.78 -34.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688210977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.479 kcal (2) G-P(sol) polarization free energy of solvation -28.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds