Wall clock time and date at job start Mon Mar 30 2020 03:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47405 * 2 1 4 4 H 1.08990 * 110.56409 * 50.86341 * 3 2 1 5 5 C 1.54478 * 110.50628 * 288.18824 * 3 2 1 6 6 O 1.44426 * 104.80423 * 217.37543 * 5 3 2 7 7 C 1.44430 * 105.27528 * 40.51124 * 6 5 3 8 8 C 1.54480 * 104.80098 * 319.49197 * 7 6 5 9 9 H 1.09002 * 110.51096 * 265.19086 * 8 7 6 10 10 N 1.46902 * 110.51150 * 142.62174 * 8 7 6 11 11 C 1.46901 * 110.99802 * 322.06931 * 10 8 7 12 12 C 1.46899 * 110.99844 * 86.01844 * 10 8 7 13 13 H 1.08994 * 109.47380 * 300.64307 * 12 10 8 14 14 C 1.53002 * 109.47068 * 60.64315 * 12 10 8 15 15 C 1.50704 * 109.47075 * 180.63941 * 12 10 8 16 16 H 1.07997 * 119.99950 * 0.02562 * 15 12 10 17 17 C 1.37876 * 120.00180 * 179.97438 * 15 12 10 18 18 N 1.31510 * 120.00425 * 180.02562 * 17 15 12 19 19 Si 1.86808 * 120.00010 * 0.02562 * 17 15 12 20 20 H 1.48496 * 109.47071 * 89.99592 * 19 17 15 21 21 H 1.48491 * 109.47062 * 210.00123 * 19 17 15 22 22 H 1.48499 * 109.46849 * 329.99866 * 19 17 15 23 23 H 1.09001 * 109.46811 * 60.00419 * 1 2 3 24 24 H 1.09005 * 109.47314 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47561 * 300.00609 * 1 2 3 26 26 H 1.08999 * 109.47561 * 239.99391 * 2 1 3 27 27 H 1.09002 * 109.47333 * 119.99543 * 2 1 3 28 28 H 1.08997 * 110.37339 * 98.54601 * 5 3 2 29 29 H 1.09008 * 110.46793 * 336.25445 * 5 3 2 30 30 H 1.08991 * 110.37356 * 200.66053 * 7 6 5 31 31 H 1.09000 * 110.46616 * 78.36397 * 7 6 5 32 32 H 1.09003 * 109.46424 * 200.67824 * 11 10 8 33 33 H 1.09003 * 109.47090 * 320.67108 * 11 10 8 34 34 H 1.08998 * 109.47317 * 80.67522 * 11 10 8 35 35 H 1.08994 * 109.47255 * 292.89923 * 14 12 10 36 36 H 1.08999 * 109.47014 * 52.90059 * 14 12 10 37 37 H 1.09004 * 109.46984 * 172.89860 * 14 12 10 38 38 H 0.96997 * 120.00605 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5604 2.0182 0.7915 5 6 1.7946 2.1033 -1.3746 6 8 2.9561 2.9321 -1.5983 7 6 4.0773 2.1495 -1.1330 8 6 3.5762 1.4736 0.1626 9 1 3.8582 2.0634 1.0348 10 7 4.1100 0.1093 0.2711 11 6 4.1510 -0.5459 -1.0431 12 6 5.4378 0.1120 0.8996 13 1 6.1204 0.7181 0.3041 14 6 5.3335 0.6974 2.3093 15 6 5.9587 -1.2999 0.9793 16 1 5.3632 -2.1174 0.6005 17 6 7.1959 -1.5480 1.5348 18 7 7.6508 -2.7800 1.6039 19 14 8.2264 -0.1339 2.1893 20 1 7.9044 0.0918 3.6213 21 1 9.6671 -0.4665 2.0523 22 1 7.9266 1.0970 1.4146 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.8924 2.7142 -1.3463 29 1 1.7142 1.3447 -2.1533 30 1 4.9284 2.7958 -0.9190 31 1 4.3498 1.3967 -1.8726 32 1 4.1894 -1.6270 -0.9089 33 1 3.2577 -0.2816 -1.6089 34 1 5.0363 -0.2156 -1.5864 35 1 5.0784 1.7551 2.2456 36 1 4.5587 0.1697 2.8655 37 1 6.2891 0.5843 2.8213 38 1 8.5214 -2.9545 1.9944 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688210977.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:16 Heat of formation + Delta-G solvation = -43.967454 kcal Electronic energy + Delta-G solvation = -17261.503675 eV Core-core repulsion = 14718.027896 eV Total energy + Delta-G solvation = -2543.475779 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.34227 -37.99973 -35.50595 -34.44489 -32.14378 -30.41961 -28.97909 -27.18344 -26.20376 -24.76016 -22.90683 -21.68010 -20.02319 -18.80954 -17.79497 -16.88334 -16.85297 -16.48960 -15.88942 -15.25551 -15.02335 -14.60009 -14.43007 -14.17620 -14.00546 -13.75747 -13.34492 -12.94752 -12.78160 -12.68882 -12.47274 -12.32536 -12.16122 -11.94987 -11.53294 -11.42728 -11.36393 -11.21237 -10.87191 -10.73859 -10.68424 -8.93932 -8.28011 -6.30858 1.29136 1.34281 1.43730 2.30880 2.87209 3.06423 3.37403 3.70955 3.81265 3.98347 4.08976 4.31913 4.39691 4.49769 4.52601 4.58276 4.61784 4.64717 4.68031 4.78836 4.79955 4.86977 4.97210 5.02739 5.06878 5.18926 5.20669 5.37717 5.43233 5.51854 5.63771 5.71058 5.79344 6.05156 6.34457 6.68770 6.76891 7.34108 8.88043 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035722 B = 0.008507 C = 0.007790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.633892 B = 3290.698956 C = 3593.388673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C -0.104 4.104 4 H 0.092 0.908 5 C 0.047 3.953 6 O -0.391 6.391 7 C 0.010 3.990 8 C 0.041 3.959 9 H 0.091 0.909 10 N -0.513 5.513 11 C 0.040 3.960 12 C 0.183 3.817 13 H -0.010 1.010 14 C -0.143 4.143 15 C -0.503 4.503 16 H 0.045 0.955 17 C 0.013 3.987 18 N -0.947 5.947 19 Si 0.945 3.055 20 H -0.266 1.266 21 H -0.300 1.300 22 H -0.252 1.252 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.014 0.986 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 10.493 -3.796 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.123 4.123 4 H 0.110 0.890 5 C -0.029 4.029 6 O -0.310 6.310 7 C -0.068 4.068 8 C -0.068 4.068 9 H 0.109 0.891 10 N -0.236 5.236 11 C -0.107 4.107 12 C 0.075 3.925 13 H 0.008 0.992 14 C -0.200 4.200 15 C -0.542 4.542 16 H 0.063 0.937 17 C -0.184 4.184 18 N -0.588 5.588 19 Si 0.773 3.227 20 H -0.192 1.192 21 H -0.228 1.228 22 H -0.176 1.176 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.128 0.872 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.085 10.330 -3.536 16.287 hybrid contribution 1.623 0.184 0.031 1.634 sum -10.462 10.515 -3.506 15.241 Atomic orbital electron populations 1.21814 0.94948 1.01733 1.02042 1.21505 0.95432 0.94623 1.02803 1.22517 0.93489 0.98077 0.98260 0.88984 1.23715 0.89390 0.94341 0.95456 1.89053 1.16729 1.40526 1.84677 1.24248 0.90544 0.95559 0.96482 1.23331 0.96034 0.89765 0.97679 0.89059 1.62092 1.24746 1.15307 1.21491 1.22376 0.99296 0.99234 0.89801 1.19588 0.86201 0.94606 0.92064 0.99214 1.22128 1.00308 0.99481 0.98078 1.21210 1.01709 0.92652 1.38593 0.93713 1.25743 0.98845 0.97698 0.96160 1.70021 1.20115 1.21342 1.47321 0.85911 0.76687 0.80541 0.79582 1.19214 1.22823 1.17609 0.91922 0.92848 0.92514 0.91943 0.92296 0.87169 0.91894 0.89803 0.91517 0.93286 0.89904 0.96744 0.92225 0.92221 0.94782 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.80 71.98 0.71 -2.19 16 2 C -0.11 -2.72 4.13 30.59 0.13 -2.59 16 3 C -0.10 -2.62 2.91 -9.78 -0.03 -2.65 16 4 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 5 C 0.05 1.08 6.32 72.48 0.46 1.54 16 6 O -0.39 -11.34 11.65 -148.98 -1.74 -13.08 16 7 C 0.01 0.30 6.79 72.49 0.49 0.80 16 8 C 0.04 1.30 2.96 45.93 0.14 1.43 16 9 H 0.09 2.87 5.73 -2.39 -0.01 2.85 16 10 N -0.51 -19.55 3.23 -870.24 -2.81 -22.36 16 11 C 0.04 1.49 6.43 127.69 0.82 2.31 16 12 C 0.18 8.29 1.51 44.17 0.07 8.36 16 13 H -0.01 -0.45 7.15 -2.39 -0.02 -0.46 16 14 C -0.14 -5.86 8.37 71.98 0.60 -5.25 16 15 C -0.50 -27.98 8.62 25.60 0.22 -27.75 16 16 H 0.04 2.77 6.76 -2.91 -0.02 2.75 16 17 C 0.01 0.73 5.45 84.65 0.46 1.19 16 18 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 19 Si 0.95 44.59 24.42 68.60 1.68 46.27 16 20 H -0.27 -11.95 6.82 99.48 0.68 -11.27 16 21 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.25 -11.08 6.53 99.48 0.65 -10.43 16 23 H 0.06 1.03 7.69 -2.39 -0.02 1.01 16 24 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.68 4.88 -2.39 -0.01 1.66 16 27 H 0.06 1.85 7.56 -2.39 -0.02 1.83 16 28 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 1.37 7.42 -2.38 -0.02 1.36 16 30 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.07 2.10 5.09 -2.39 -0.01 2.08 16 32 H 0.05 2.03 6.92 -2.39 -0.02 2.01 16 33 H 0.08 2.50 4.41 -2.39 -0.01 2.49 16 34 H 0.01 0.54 6.93 -2.39 -0.02 0.53 16 35 H 0.06 2.05 6.37 -2.39 -0.02 2.03 16 36 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.03 1.46 3.22 -2.38 -0.01 1.46 16 38 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -62.77 274.28 2.44 -60.33 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.95 Total: 12.07 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 4.06 Total: -24.82 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.52 Total: -80.77 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.74 Total: -13.08 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.68 Total: 46.27 kcal Total: -62.77 2.44 -60.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688210977.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.361 kcal (2) G-P(sol) polarization free energy of solvation -62.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds