Wall clock time and date at job start Mon Mar 30 2020 03:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47053 * 2 1 4 4 H 1.08990 * 110.46059 * 54.66830 * 3 2 1 5 5 C 1.54478 * 110.62672 * 291.98233 * 3 2 1 6 6 O 1.44428 * 104.80497 * 217.32261 * 5 3 2 7 7 C 1.44425 * 105.27227 * 40.51017 * 6 5 3 8 8 C 1.54472 * 104.80793 * 319.48966 * 7 6 5 9 9 H 1.08994 * 110.51603 * 265.33737 * 8 7 6 10 10 N 1.46895 * 110.51418 * 142.62133 * 8 7 6 11 11 C 1.46896 * 111.00550 * 168.79851 * 10 8 7 12 12 C 1.46903 * 110.99901 * 44.84692 * 10 8 7 13 13 H 1.08999 * 109.47055 * 47.14225 * 12 10 8 14 14 C 1.53000 * 109.47089 * 287.14687 * 12 10 8 15 15 C 1.50695 * 109.47211 * 167.14911 * 12 10 8 16 16 H 1.07997 * 120.00349 * 5.22256 * 15 12 10 17 17 C 1.37878 * 120.00164 * 185.22389 * 15 12 10 18 18 N 1.31509 * 120.00745 * 190.91040 * 17 15 12 19 19 Si 1.86810 * 119.99817 * 10.91540 * 17 15 12 20 20 H 1.48494 * 109.47216 * 94.78915 * 19 17 15 21 21 H 1.48502 * 109.46880 * 214.79014 * 19 17 15 22 22 H 1.48500 * 109.46887 * 334.78783 * 19 17 15 23 23 H 1.09002 * 109.47063 * 300.00434 * 1 2 3 24 24 H 1.09000 * 109.47023 * 59.99971 * 1 2 3 25 25 H 1.08998 * 109.47555 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46819 * 240.00026 * 2 1 3 27 27 H 1.09000 * 109.47023 * 120.00029 * 2 1 3 28 28 H 1.08996 * 110.37326 * 336.15395 * 5 3 2 29 29 H 1.08997 * 110.37311 * 98.49348 * 5 3 2 30 30 H 1.09008 * 110.37223 * 200.65616 * 7 6 5 31 31 H 1.09004 * 110.46363 * 78.37417 * 7 6 5 32 32 H 1.09000 * 109.46942 * 33.92240 * 11 10 8 33 33 H 1.08999 * 109.47694 * 153.92236 * 11 10 8 34 34 H 1.09002 * 109.47548 * 273.92404 * 11 10 8 35 35 H 1.08996 * 109.47125 * 91.66827 * 14 12 10 36 36 H 1.08998 * 109.47351 * 211.67948 * 14 12 10 37 37 H 1.09006 * 109.47113 * 331.67511 * 14 12 10 38 38 H 0.96993 * 120.00663 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6102 1.9986 0.8331 5 6 1.7111 2.1360 -1.3406 6 8 2.8572 2.9710 -1.6151 7 6 4.0043 2.1784 -1.2384 8 6 3.5833 1.4711 0.0688 9 1 3.9164 2.0412 0.9359 10 7 4.1220 0.1051 0.1114 11 6 3.9591 -0.4837 1.4473 12 6 5.5302 0.0812 -0.3062 13 1 6.0748 0.8738 0.2069 14 6 5.6175 0.2989 -1.8182 15 6 6.1357 -1.2533 0.0449 16 1 5.5150 -2.0376 0.4522 17 6 7.4823 -1.4730 -0.1539 18 7 7.9719 -2.6895 -0.0541 19 14 8.6114 -0.0427 -0.5648 20 1 9.2359 0.4689 0.6815 21 1 9.6719 -0.5014 -1.4977 22 1 7.8240 1.0414 -1.2050 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5838 1.3951 -2.1299 29 1 0.8127 2.7452 -1.2424 30 1 4.8674 2.8202 -1.0616 31 1 4.2305 1.4440 -2.0114 32 1 3.0352 -0.1179 1.8954 33 1 3.9171 -1.5696 1.3632 34 1 4.8042 -0.2003 2.0748 35 1 5.7296 1.3630 -2.0262 36 1 6.4774 -0.2414 -2.2140 37 1 4.7074 -0.0698 -2.2915 38 1 8.9192 -2.8441 -0.1936 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688210982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:22 Heat of formation + Delta-G solvation = -8.649718 kcal Electronic energy + Delta-G solvation = -17338.627670 eV Core-core repulsion = 14796.683384 eV Total energy + Delta-G solvation = -2541.944287 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.88891 -36.49009 -34.40863 -32.45534 -30.42732 -29.55144 -27.89460 -24.87655 -24.63066 -23.23020 -21.41767 -20.32353 -18.81558 -16.92866 -16.13049 -15.47470 -15.27280 -14.69719 -14.06185 -13.98308 -13.72052 -13.37486 -12.91866 -12.73758 -12.25085 -11.91874 -11.85302 -11.59941 -11.28439 -10.97934 -10.81043 -10.69116 -10.66518 -10.39227 -10.19329 -10.16124 -9.80135 -9.67231 -9.19466 -8.82115 -8.57490 -7.38624 -6.12263 -4.08988 3.24367 3.34640 3.37503 4.24365 4.38319 4.78134 4.88086 5.06509 5.19444 5.20472 5.46220 5.56548 5.59910 5.65658 5.76007 5.90104 5.98553 6.07141 6.11018 6.16289 6.21330 6.31100 6.33762 6.44306 6.51063 6.55353 6.66794 6.80478 6.83580 6.91426 7.06730 7.26928 7.57390 7.92072 8.04948 8.59905 8.95728 9.51669 11.00043 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035010 B = 0.009146 C = 0.007830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.580751 B = 3060.605713 C = 3575.311879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.111 4.111 4 H 0.071 0.929 5 C 0.055 3.945 6 O -0.388 6.388 7 C 0.016 3.984 8 C 0.052 3.948 9 H 0.042 0.958 10 N -0.516 5.516 11 C 0.042 3.958 12 C 0.182 3.818 13 H -0.004 1.004 14 C -0.149 4.149 15 C -0.515 4.515 16 H 0.083 0.917 17 C 0.074 3.926 18 N -0.894 5.894 19 Si 0.863 3.137 20 H -0.283 1.283 21 H -0.286 1.286 22 H -0.254 1.254 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.035 0.965 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.012 7.655 -0.425 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C -0.130 4.130 4 H 0.089 0.911 5 C -0.022 4.022 6 O -0.307 6.307 7 C -0.060 4.060 8 C -0.058 4.058 9 H 0.060 0.940 10 N -0.242 5.242 11 C -0.106 4.106 12 C 0.075 3.925 13 H 0.013 0.987 14 C -0.206 4.206 15 C -0.553 4.553 16 H 0.101 0.899 17 C -0.128 4.128 18 N -0.532 5.532 19 Si 0.690 3.310 20 H -0.209 1.209 21 H -0.212 1.212 22 H -0.178 1.178 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.099 7.478 -0.864 13.411 hybrid contribution 1.316 1.001 0.586 1.755 sum -9.782 8.479 -0.278 12.949 Atomic orbital electron populations 1.21881 0.97300 1.01149 1.00884 1.21627 0.93332 0.95118 1.04757 1.22535 0.95189 0.97605 0.97720 0.91102 1.23415 0.89499 0.93541 0.95767 1.89044 1.15806 1.39514 1.86311 1.24925 0.88351 0.94929 0.97749 1.22992 0.94214 0.91321 0.97286 0.93962 1.62250 1.20591 1.15226 1.26112 1.22311 0.98240 1.00858 0.89205 1.19699 0.83690 0.97229 0.91875 0.98668 1.22732 1.00970 0.98076 0.98825 1.21016 0.93839 0.97185 1.43228 0.89913 1.24892 0.98069 0.95150 0.94679 1.69923 1.13799 1.19725 1.49717 0.87172 0.81032 0.84233 0.78556 1.20908 1.21240 1.17821 0.93499 0.93348 0.92994 0.90539 0.90166 0.92225 0.90165 0.90066 0.87099 0.93549 0.91088 0.95214 0.94601 0.92922 0.92392 0.92656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.77 37.16 0.36 -1.38 16 2 C -0.11 -1.54 4.23 -26.73 -0.11 -1.66 16 3 C -0.11 -1.60 2.86 -89.05 -0.25 -1.86 16 4 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 5 C 0.05 0.77 6.41 37.93 0.24 1.01 16 6 O -0.39 -6.54 11.65 -35.23 -0.41 -6.95 16 7 C 0.02 0.28 5.10 37.93 0.19 0.47 16 8 C 0.05 0.89 2.77 -66.15 -0.18 0.71 16 9 H 0.04 0.75 8.06 -51.93 -0.42 0.33 16 10 N -0.52 -10.11 3.40 -226.43 -0.77 -10.88 16 11 C 0.04 0.78 7.23 60.06 0.43 1.21 16 12 C 0.18 4.15 1.33 -68.87 -0.09 4.05 16 13 H 0.00 -0.10 6.80 -51.93 -0.35 -0.45 16 14 C -0.15 -3.14 5.98 37.16 0.22 -2.92 16 15 C -0.51 -13.82 8.16 -34.44 -0.28 -14.10 16 16 H 0.08 2.41 6.40 -52.49 -0.34 2.07 16 17 C 0.07 2.08 5.19 -17.82 -0.09 1.99 16 18 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 19 Si 0.86 20.84 25.79 -169.99 -4.38 16.46 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.25 -5.75 5.53 56.52 0.31 -5.44 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.51 7.55 -51.93 -0.39 0.11 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.08 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.08 1.18 4.57 -51.93 -0.24 0.94 16 28 H 0.06 0.82 7.79 -51.93 -0.40 0.42 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.39 7.75 -51.92 -0.40 0.99 16 31 H 0.11 2.00 3.67 -52.04 -0.19 1.81 16 32 H 0.05 0.73 5.71 -51.93 -0.30 0.43 16 33 H 0.07 1.41 6.94 -51.93 -0.36 1.05 16 34 H 0.03 0.60 7.73 -51.93 -0.40 0.19 16 35 H 0.04 0.68 5.44 -51.93 -0.28 0.40 16 36 H 0.05 1.19 5.71 -51.93 -0.30 0.89 16 37 H 0.06 1.17 7.08 -51.93 -0.37 0.80 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 273.49 15.07 4.12 4.12 Total: -1.00 -28.64 273.49 -6.29 -34.93 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.06 Total: 0.67 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 0.44 Total: -12.47 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.00 Total: -36.77 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.41 Total: -6.95 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.38 Total: 16.46 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.64 -6.29 -34.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688210982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.284 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds