Wall clock time and date at job start Mon Mar 30 2020 03:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47053 * 2 1 4 4 H 1.08990 * 110.46059 * 54.66830 * 3 2 1 5 5 C 1.54478 * 110.62672 * 291.98233 * 3 2 1 6 6 O 1.44428 * 104.80497 * 217.32261 * 5 3 2 7 7 C 1.44425 * 105.27227 * 40.51017 * 6 5 3 8 8 C 1.54472 * 104.80793 * 319.48966 * 7 6 5 9 9 H 1.08994 * 110.51603 * 265.33737 * 8 7 6 10 10 N 1.46895 * 110.51418 * 142.62133 * 8 7 6 11 11 C 1.46896 * 111.00550 * 168.79851 * 10 8 7 12 12 C 1.46903 * 110.99901 * 44.84692 * 10 8 7 13 13 H 1.08999 * 109.47055 * 47.14225 * 12 10 8 14 14 C 1.53000 * 109.47089 * 287.14687 * 12 10 8 15 15 C 1.50695 * 109.47211 * 167.14911 * 12 10 8 16 16 H 1.07997 * 120.00349 * 5.22256 * 15 12 10 17 17 C 1.37878 * 120.00164 * 185.22389 * 15 12 10 18 18 N 1.31509 * 120.00745 * 190.91040 * 17 15 12 19 19 Si 1.86810 * 119.99817 * 10.91540 * 17 15 12 20 20 H 1.48494 * 109.47216 * 94.78915 * 19 17 15 21 21 H 1.48502 * 109.46880 * 214.79014 * 19 17 15 22 22 H 1.48500 * 109.46887 * 334.78783 * 19 17 15 23 23 H 1.09002 * 109.47063 * 300.00434 * 1 2 3 24 24 H 1.09000 * 109.47023 * 59.99971 * 1 2 3 25 25 H 1.08998 * 109.47555 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46819 * 240.00026 * 2 1 3 27 27 H 1.09000 * 109.47023 * 120.00029 * 2 1 3 28 28 H 1.08996 * 110.37326 * 336.15395 * 5 3 2 29 29 H 1.08997 * 110.37311 * 98.49348 * 5 3 2 30 30 H 1.09008 * 110.37223 * 200.65616 * 7 6 5 31 31 H 1.09004 * 110.46363 * 78.37417 * 7 6 5 32 32 H 1.09000 * 109.46942 * 33.92240 * 11 10 8 33 33 H 1.08999 * 109.47694 * 153.92236 * 11 10 8 34 34 H 1.09002 * 109.47548 * 273.92404 * 11 10 8 35 35 H 1.08996 * 109.47125 * 91.66827 * 14 12 10 36 36 H 1.08998 * 109.47351 * 211.67948 * 14 12 10 37 37 H 1.09006 * 109.47113 * 331.67511 * 14 12 10 38 38 H 0.96993 * 120.00663 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6102 1.9986 0.8331 5 6 1.7111 2.1360 -1.3406 6 8 2.8572 2.9710 -1.6151 7 6 4.0043 2.1784 -1.2384 8 6 3.5833 1.4711 0.0688 9 1 3.9164 2.0412 0.9359 10 7 4.1220 0.1051 0.1114 11 6 3.9591 -0.4837 1.4473 12 6 5.5302 0.0812 -0.3062 13 1 6.0748 0.8738 0.2069 14 6 5.6175 0.2989 -1.8182 15 6 6.1357 -1.2533 0.0449 16 1 5.5150 -2.0376 0.4522 17 6 7.4823 -1.4730 -0.1539 18 7 7.9719 -2.6895 -0.0541 19 14 8.6114 -0.0427 -0.5648 20 1 9.2359 0.4689 0.6815 21 1 9.6719 -0.5014 -1.4977 22 1 7.8240 1.0414 -1.2050 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.5838 1.3951 -2.1299 29 1 0.8127 2.7452 -1.2424 30 1 4.8674 2.8202 -1.0616 31 1 4.2305 1.4440 -2.0114 32 1 3.0352 -0.1179 1.8954 33 1 3.9171 -1.5696 1.3632 34 1 4.8042 -0.2003 2.0748 35 1 5.7296 1.3630 -2.0262 36 1 6.4774 -0.2414 -2.2140 37 1 4.7074 -0.0698 -2.2915 38 1 8.9192 -2.8441 -0.1936 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688210982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:21 Heat of formation + Delta-G solvation = -28.103783 kcal Electronic energy + Delta-G solvation = -17339.471262 eV Core-core repulsion = 14796.683384 eV Total energy + Delta-G solvation = -2542.787878 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23225 -38.02857 -35.70426 -34.37872 -32.09223 -30.95669 -29.12316 -26.77401 -26.11666 -24.42610 -22.77208 -21.94429 -20.21032 -18.83421 -17.51780 -16.99771 -16.65931 -16.27760 -15.61727 -15.41580 -15.24340 -14.68654 -14.60674 -14.19060 -13.57179 -13.40538 -13.35828 -12.99872 -12.73259 -12.59172 -12.43507 -12.31274 -12.06410 -11.91210 -11.61704 -11.52411 -11.29924 -11.03332 -10.97805 -10.69611 -10.33996 -8.99715 -8.28125 -6.28540 1.32177 1.37118 1.46302 2.34905 2.92458 3.06403 3.37602 3.65255 3.87547 4.01195 4.25259 4.32023 4.41320 4.49725 4.55489 4.66506 4.69729 4.73526 4.77610 4.82339 4.89626 4.93710 4.98072 5.01887 5.10297 5.20001 5.22589 5.37928 5.43187 5.50370 5.70900 5.73614 5.82091 6.06173 6.33516 6.70193 6.79504 7.36113 8.87567 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035010 B = 0.009146 C = 0.007830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.580751 B = 3060.605713 C = 3575.311879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.104 4.104 4 H 0.089 0.911 5 C 0.053 3.947 6 O -0.397 6.397 7 C 0.017 3.983 8 C 0.046 3.954 9 H 0.042 0.958 10 N -0.518 5.518 11 C 0.049 3.951 12 C 0.185 3.815 13 H -0.009 1.009 14 C -0.143 4.143 15 C -0.512 4.512 16 H 0.046 0.954 17 C 0.018 3.982 18 N -0.944 5.944 19 Si 0.923 3.077 20 H -0.283 1.283 21 H -0.286 1.286 22 H -0.228 1.228 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.010 0.990 35 H 0.061 0.939 36 H 0.034 0.966 37 H 0.064 0.936 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.518 9.976 -0.853 16.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.123 4.123 4 H 0.107 0.893 5 C -0.023 4.023 6 O -0.316 6.316 7 C -0.059 4.059 8 C -0.064 4.064 9 H 0.060 0.940 10 N -0.244 5.244 11 C -0.099 4.099 12 C 0.077 3.923 13 H 0.008 0.992 14 C -0.200 4.200 15 C -0.550 4.550 16 H 0.065 0.935 17 C -0.179 4.179 18 N -0.584 5.584 19 Si 0.747 3.253 20 H -0.209 1.209 21 H -0.212 1.212 22 H -0.150 1.150 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.637 9.817 -1.295 16.055 hybrid contribution 1.673 0.224 0.762 1.852 sum -10.964 10.041 -0.533 14.877 Atomic orbital electron populations 1.21817 0.94900 1.01799 1.02062 1.21534 0.95405 0.94468 1.03069 1.22541 0.92864 0.98107 0.98824 0.89265 1.23598 0.89578 0.93827 0.95341 1.89040 1.16273 1.39918 1.86389 1.24797 0.88953 0.94839 0.97283 1.23113 0.96273 0.89548 0.97438 0.94013 1.62194 1.18514 1.17248 1.26397 1.22232 0.99082 0.99705 0.88842 1.19563 0.85281 0.94394 0.93040 0.99189 1.22648 1.00600 0.99544 0.97197 1.21263 0.93666 0.98209 1.41892 0.93532 1.25693 0.99784 0.97519 0.94950 1.70063 1.14190 1.22112 1.52005 0.86202 0.79040 0.81658 0.78373 1.20922 1.21243 1.15019 0.92191 0.92244 0.92730 0.92752 0.91336 0.92086 0.87365 0.89917 0.87890 0.90163 0.93185 0.97169 0.92013 0.94662 0.91737 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.77 71.98 0.70 -2.17 16 2 C -0.11 -2.75 4.23 30.59 0.13 -2.62 16 3 C -0.10 -2.68 2.86 -9.78 -0.03 -2.71 16 4 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 5 C 0.05 1.30 6.41 72.48 0.46 1.76 16 6 O -0.40 -12.13 11.65 -148.98 -1.74 -13.87 16 7 C 0.02 0.55 5.10 72.48 0.37 0.92 16 8 C 0.05 1.47 2.77 45.93 0.13 1.60 16 9 H 0.04 1.37 8.06 -2.39 -0.02 1.35 16 10 N -0.52 -19.93 3.40 -870.29 -2.96 -22.89 16 11 C 0.05 1.84 7.23 127.69 0.92 2.77 16 12 C 0.19 8.32 1.33 44.17 0.06 8.38 16 13 H -0.01 -0.43 6.80 -2.39 -0.02 -0.45 16 14 C -0.14 -5.81 5.98 71.98 0.43 -5.38 16 15 C -0.51 -28.16 8.16 25.60 0.21 -27.95 16 16 H 0.05 2.84 6.40 -2.91 -0.02 2.82 16 17 C 0.02 1.04 5.19 84.66 0.44 1.48 16 18 N -0.94 -58.05 13.96 21.45 0.30 -57.75 16 19 Si 0.92 43.00 25.79 68.60 1.77 44.77 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 H -0.23 -9.52 5.53 99.48 0.55 -8.97 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.03 7.55 -2.39 -0.02 1.01 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 1.64 7.85 -2.38 -0.02 1.62 16 27 H 0.07 1.90 4.57 -2.39 -0.01 1.89 16 28 H 0.06 1.50 7.79 -2.39 -0.02 1.48 16 29 H 0.11 2.08 8.14 -2.39 -0.02 2.07 16 30 H 0.08 2.61 7.75 -2.38 -0.02 2.59 16 31 H 0.10 3.46 3.67 -2.49 -0.01 3.45 16 32 H 0.08 2.43 5.71 -2.39 -0.01 2.42 16 33 H 0.05 2.06 6.94 -2.39 -0.02 2.04 16 34 H 0.01 0.40 7.73 -2.39 -0.02 0.38 16 35 H 0.06 2.20 5.44 -2.39 -0.01 2.18 16 36 H 0.03 1.54 5.71 -2.39 -0.01 1.53 16 37 H 0.06 2.52 7.08 -2.38 -0.02 2.50 16 38 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -62.27 273.49 2.08 -60.19 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.88 Total: 13.47 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 3.83 Total: -23.93 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -2.66 Total: -80.64 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -1.74 Total: -13.87 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.77 Total: 44.77 kcal Total: -62.27 2.08 -60.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688210982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.084 kcal (2) G-P(sol) polarization free energy of solvation -62.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds