Wall clock time and date at job start Mon Mar 30 2020 03:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47196 * 2 1 4 4 H 1.09006 * 110.45762 * 52.39536 * 3 2 1 5 5 C 1.54472 * 110.51350 * 289.64240 * 3 2 1 6 6 O 1.44428 * 104.80278 * 265.33580 * 5 3 2 7 7 C 1.44425 * 105.27570 * 319.48621 * 6 5 3 8 8 C 1.54484 * 104.80130 * 40.51105 * 7 6 5 9 9 H 1.09000 * 110.62572 * 94.72525 * 8 7 6 10 10 N 1.46902 * 110.50811 * 217.37717 * 8 7 6 11 11 C 1.46906 * 110.99573 * 170.68983 * 10 8 7 12 12 C 1.46898 * 111.00283 * 294.64124 * 10 8 7 13 13 C 1.53000 * 109.47048 * 170.00220 * 12 10 8 14 14 C 1.50703 * 109.46774 * 180.02562 * 13 12 10 15 15 H 1.08003 * 120.00134 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99560 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00470 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99589 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.46954 * 90.00216 * 18 16 14 20 20 H 1.48501 * 109.47168 * 209.99574 * 18 16 14 21 21 H 1.48495 * 109.47485 * 329.99816 * 18 16 14 22 22 H 1.09002 * 109.47675 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47313 * 300.00254 * 1 2 3 24 24 H 1.09000 * 109.46964 * 60.00072 * 1 2 3 25 25 H 1.08998 * 109.46918 * 240.00267 * 2 1 3 26 26 H 1.09000 * 109.46964 * 119.99928 * 2 1 3 27 27 H 1.09005 * 110.37406 * 24.16206 * 5 3 2 28 28 H 1.08995 * 110.37939 * 146.50309 * 5 3 2 29 29 H 1.09001 * 110.37027 * 281.68449 * 7 6 5 30 30 H 1.08994 * 110.37403 * 159.34863 * 7 6 5 31 31 H 1.09001 * 109.46544 * 183.95424 * 11 10 8 32 32 H 1.09001 * 109.47272 * 303.95030 * 11 10 8 33 33 H 1.09000 * 109.47033 * 63.95479 * 11 10 8 34 34 H 1.08992 * 109.47062 * 290.00772 * 12 10 8 35 35 H 1.09003 * 109.46753 * 50.00460 * 12 10 8 36 36 H 1.09001 * 109.47085 * 300.00035 * 13 12 10 37 37 H 1.08993 * 109.47201 * 60.00475 * 13 12 10 38 38 H 0.96999 * 120.00383 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5794 2.0094 0.8091 5 6 1.7619 2.1149 -1.3626 6 8 2.9793 1.9345 -2.1184 7 6 4.0497 2.1592 -1.1752 8 6 3.5797 1.4723 0.1262 9 1 3.9773 0.4595 0.1910 10 7 3.9849 2.2590 1.2988 11 6 3.3598 1.7397 2.5226 12 6 5.4477 2.2944 1.4290 13 6 5.8398 3.3151 2.4992 14 6 7.3405 3.3518 2.6324 15 1 7.9533 2.7116 2.0151 16 6 7.9311 4.2029 3.5423 17 7 7.1850 4.9829 4.2936 18 14 9.7912 4.2479 3.7078 19 1 10.3468 5.2609 2.7747 20 1 10.1556 4.6068 5.1020 21 1 10.3501 2.9122 3.3784 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 0.9276 1.6248 -1.8644 28 1 1.5536 3.1761 -1.2266 29 1 4.1921 3.2273 -1.0104 30 1 4.9728 1.7033 -1.5330 31 1 3.6204 2.3818 3.3641 32 1 2.2770 1.7242 2.3991 33 1 3.7184 0.7281 2.7127 34 1 5.8107 1.3080 1.7173 35 1 5.8906 2.5800 0.4749 36 1 5.4767 4.3016 2.2109 37 1 5.3970 3.0295 3.4533 38 1 7.6006 5.5819 4.9334 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688218021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:09 Heat of formation + Delta-G solvation = -76.060004 kcal Electronic energy + Delta-G solvation = -16391.366443 eV Core-core repulsion = 13846.499027 eV Total energy + Delta-G solvation = -2544.867416 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.02231 -37.93202 -35.54019 -34.91720 -31.96175 -30.24131 -29.29156 -27.37520 -25.45987 -24.81508 -22.78040 -21.24500 -20.93793 -18.65529 -17.63229 -17.27257 -16.53140 -16.49568 -15.66996 -15.42937 -15.11790 -14.79920 -14.50419 -14.10397 -14.03866 -13.50482 -13.34252 -12.98707 -12.82866 -12.71936 -12.56461 -12.41647 -12.24848 -11.95703 -11.68651 -11.59038 -11.39177 -11.30057 -11.14184 -10.70221 -10.54093 -9.25138 -8.20232 -6.31447 1.40432 1.41729 1.52591 2.39838 2.82448 3.13469 3.19875 3.48521 3.83460 3.93133 4.13126 4.24739 4.25964 4.40596 4.44562 4.57715 4.60508 4.64870 4.73640 4.74302 4.82456 4.88563 4.89411 5.00462 5.05704 5.14019 5.19958 5.30831 5.45134 5.46283 5.62987 5.73031 5.81160 6.06407 6.28311 6.31006 6.85570 7.37757 8.91884 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.047099 B = 0.005427 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.343928 B = 5158.205599 C = 5459.892846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.114 4.114 4 H 0.094 0.906 5 C 0.049 3.951 6 O -0.390 6.390 7 C 0.054 3.946 8 C 0.053 3.947 9 H 0.051 0.949 10 N -0.542 5.542 11 C 0.028 3.972 12 C 0.077 3.923 13 C 0.037 3.963 14 C -0.545 4.545 15 H 0.059 0.941 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.263 1.263 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.023 0.977 34 H 0.020 0.980 35 H 0.064 0.936 36 H -0.008 1.008 37 H -0.004 1.004 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.059 -9.235 -8.793 17.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.133 4.133 4 H 0.112 0.888 5 C -0.027 4.027 6 O -0.309 6.309 7 C -0.023 4.023 8 C -0.056 4.056 9 H 0.069 0.931 10 N -0.268 5.268 11 C -0.120 4.120 12 C -0.050 4.050 13 C 0.000 4.000 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.188 1.188 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.130 0.870 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.083 0.917 36 H 0.011 0.989 37 H 0.014 0.986 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.205 -8.693 -8.970 17.464 hybrid contribution 1.388 -0.334 0.840 1.657 sum -10.817 -9.027 -8.130 16.266 Atomic orbital electron populations 1.21794 0.94046 1.02424 1.02361 1.21527 0.97213 0.94080 1.02023 1.22673 0.93211 0.98419 0.98975 0.88764 1.23631 0.88069 1.00147 0.90876 1.89067 1.16040 1.91935 1.33834 1.23411 0.91186 1.00142 0.87601 1.23111 0.96315 0.95226 0.90951 0.93104 1.62125 1.08749 1.52490 1.03396 1.22397 1.00164 0.97450 0.91950 1.22022 0.85896 0.97531 0.99579 1.18911 0.94595 0.93525 0.93009 1.21624 0.93297 1.22490 1.20949 0.92259 1.25931 1.03458 0.94917 0.95174 1.70102 1.37349 1.25298 1.24375 0.85454 0.79304 0.78876 0.77443 1.19761 1.20705 1.18769 0.91752 0.92415 0.91854 0.91816 0.92169 0.86968 0.92184 0.92308 0.88873 0.92883 0.89329 0.95799 0.96204 0.91728 0.98933 0.98554 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.78 71.98 0.70 -1.46 16 2 C -0.11 -2.09 5.17 30.59 0.16 -1.93 16 3 C -0.11 -2.63 2.21 -9.78 -0.02 -2.66 16 4 H 0.09 2.22 6.19 -2.38 -0.01 2.21 16 5 C 0.05 1.11 7.04 72.48 0.51 1.62 16 6 O -0.39 -11.10 11.65 -148.98 -1.74 -12.84 16 7 C 0.05 1.60 6.05 72.49 0.44 2.04 16 8 C 0.05 1.54 2.48 45.93 0.11 1.65 16 9 H 0.05 1.49 7.73 -2.39 -0.02 1.47 16 10 N -0.54 -19.39 4.57 -891.05 -4.07 -23.47 16 11 C 0.03 0.92 9.02 127.69 1.15 2.07 16 12 C 0.08 3.27 4.79 86.30 0.41 3.69 16 13 C 0.04 1.98 4.90 29.85 0.15 2.13 16 14 C -0.55 -31.25 9.11 25.60 0.23 -31.02 16 15 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 16 C 0.00 0.19 5.46 84.66 0.46 0.65 16 17 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 18 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 22 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.06 0.82 6.73 -2.39 -0.02 0.81 16 25 H 0.06 1.23 8.13 -2.39 -0.02 1.22 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 27 H 0.11 1.99 6.48 -2.38 -0.02 1.97 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.93 8.05 -2.39 -0.02 1.91 16 30 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.05 2.01 6.47 -2.39 -0.02 1.99 16 32 H 0.09 2.35 6.01 -2.39 -0.01 2.33 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.02 0.84 8.12 -2.39 -0.02 0.82 16 35 H 0.06 2.67 7.03 -2.39 -0.02 2.66 16 36 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 37 H 0.00 -0.22 6.55 -2.39 -0.02 -0.24 16 38 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -64.16 296.92 1.82 -62.34 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.01 Total: 7.50 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 4.31 Total: -23.20 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -3.79 Total: -80.19 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -1.74 Total: -12.84 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -64.16 1.82 -62.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688218021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.721 kcal (2) G-P(sol) polarization free energy of solvation -64.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds