Wall clock time and date at job start Mon Mar 30 2020 03:39:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53000 * 109.47499 * 2 1
4 4 H 1.09005 * 110.45536 * 305.47244 * 3 2 1
5 5 C 1.54488 * 110.62523 * 68.15233 * 3 2 1
6 6 O 1.44428 * 104.79985 * 142.68300 * 5 3 2
7 7 C 1.44640 * 105.37103 * 319.56876 * 6 5 3
8 8 C 1.54478 * 104.69707 * 40.34365 * 7 6 5
9 9 H 1.09006 * 110.50996 * 94.90750 * 8 7 6
10 10 N 1.46904 * 110.51238 * 217.47499 * 8 7 6
11 11 C 1.46891 * 110.99960 * 320.78630 * 10 8 7
12 12 C 1.46900 * 110.99998 * 196.83252 * 10 8 7
13 13 C 1.52999 * 109.47351 * 190.00399 * 12 10 8
14 14 C 1.50696 * 109.47266 * 180.02562 * 13 12 10
15 15 H 1.07999 * 120.00260 * 359.97438 * 14 13 12
16 16 C 1.37880 * 120.00003 * 180.27516 * 14 13 12
17 17 N 1.31512 * 120.00205 * 179.72035 * 16 14 13
18 18 Si 1.86806 * 119.99725 * 359.72074 * 16 14 13
19 19 H 1.48502 * 109.47272 * 90.00052 * 18 16 14
20 20 H 1.48502 * 109.46919 * 209.99946 * 18 16 14
21 21 H 1.48501 * 109.47257 * 329.99975 * 18 16 14
22 22 H 1.08996 * 109.46967 * 59.99970 * 1 2 3
23 23 H 1.08996 * 109.46979 * 180.02562 * 1 2 3
24 24 H 1.09004 * 109.46714 * 299.99836 * 1 2 3
25 25 H 1.09007 * 109.47217 * 240.00203 * 2 1 3
26 26 H 1.08999 * 109.47467 * 119.99986 * 2 1 3
27 27 H 1.08995 * 110.37132 * 261.51118 * 5 3 2
28 28 H 1.08999 * 110.36833 * 23.85627 * 5 3 2
29 29 H 1.08997 * 110.34064 * 281.59178 * 7 6 5
30 30 H 1.08997 * 110.51087 * 159.18750 * 7 6 5
31 31 H 1.09002 * 109.47426 * 295.48004 * 11 10 8
32 32 H 1.09001 * 109.47688 * 55.48488 * 11 10 8
33 33 H 1.09005 * 109.47241 * 175.48638 * 11 10 8
34 34 H 1.08999 * 109.47422 * 70.00246 * 12 10 8
35 35 H 1.09010 * 109.47039 * 310.00063 * 12 10 8
36 36 H 1.08999 * 109.46982 * 59.99578 * 13 12 10
37 37 H 1.09001 * 109.46870 * 300.00040 * 13 12 10
38 38 H 0.96996 * 119.99918 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6083 1.9992 -0.8318
5 6 1.7142 2.1349 1.3420
6 8 2.8609 2.9697 1.6144
7 6 4.0102 2.1788 1.2328
8 6 3.5831 1.4711 -0.0723
9 1 3.9143 2.0400 -0.9412
10 7 4.1218 0.1052 -0.1172
11 6 5.4885 0.0603 0.4194
12 6 4.0744 -0.4348 -1.4826
13 6 4.4046 -1.9284 -1.4522
14 6 4.3566 -2.4821 -2.8529
15 1 4.1144 -1.8337 -3.6819
16 6 4.6158 -3.8179 -3.0754
17 7 4.5685 -4.3024 -4.2971
18 14 5.0341 -4.9396 -1.6414
19 1 3.7860 -5.5286 -1.0931
20 1 5.9309 -6.0271 -2.1088
21 1 5.7180 -4.1550 -0.5822
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5138 0.8900
25 1 1.8934 -0.5138 -0.8900
26 1 1.8934 -0.5138 0.8900
27 1 0.8156 2.7442 1.2462
28 1 1.5888 1.3933 2.1309
29 1 4.2383 1.4445 2.0054
30 1 4.8724 2.8206 1.0518
31 1 6.1493 0.6458 -0.2198
32 1 5.4969 0.4750 1.4274
33 1 5.8335 -0.9733 0.4489
34 1 4.8026 0.0857 -2.1046
35 1 3.0757 -0.2918 -1.8954
36 1 3.6764 -2.4488 -0.8301
37 1 5.4032 -2.0714 -1.0394
38 1 4.7505 -5.2422 -4.4536
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000688218040.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:39:15
Heat of formation + Delta-G solvation = -41.954993 kcal
Electronic energy + Delta-G solvation = -16761.395403 eV
Core-core repulsion = 14218.006891 eV
Total energy + Delta-G solvation = -2543.388512 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-39.97412 -36.66652 -34.11090 -33.02818 -30.80697 -28.90021 -27.82815 -26.52168
-23.64816 -23.39746 -21.37188 -20.12715 -19.26241 -16.87856 -16.52537 -15.94588
-15.52620 -14.68230 -14.40444 -14.21686 -13.69699 -13.41209 -13.06582 -12.84327
-12.55308 -12.47610 -11.93198 -11.67745 -11.42637 -11.36587 -11.11110 -10.90524
-10.56250 -10.43348 -10.28133 -10.10254 -9.81807 -9.60641 -9.56497 -9.19769
-8.54606 -7.88580 -6.06146 -4.04453 3.30834 3.38063 3.42093 3.91623
4.36776 4.44254 4.65268 4.85333 4.99674 5.22920 5.28351 5.36551
5.46724 5.53207 5.60329 5.63129 5.70441 5.75235 5.87697 5.90854
5.99123 6.05754 6.12625 6.28071 6.29198 6.34938 6.56309 6.70526
6.74489 6.87967 7.15085 7.27268 7.53951 7.58954 7.82287 8.50941
8.97940 9.56311 11.07225
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.033656 B = 0.007134 C = 0.006531
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 831.754581 B = 3923.687466 C = 4286.324849
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.111 4.111
3 C -0.110 4.110
4 H 0.077 0.923
5 C 0.053 3.947
6 O -0.382 6.382
7 C 0.047 3.953
8 C 0.051 3.949
9 H 0.054 0.946
10 N -0.531 5.531
11 C 0.015 3.985
12 C 0.065 3.935
13 C -0.006 4.006
14 C -0.522 4.522
15 H 0.070 0.930
16 C 0.068 3.932
17 N -0.903 5.903
18 Si 0.881 3.119
19 H -0.277 1.277
20 H -0.289 1.289
21 H -0.265 1.265
22 H 0.049 0.951
23 H 0.054 0.946
24 H 0.045 0.955
25 H 0.087 0.913
26 H 0.071 0.929
27 H 0.085 0.915
28 H 0.061 0.939
29 H 0.072 0.928
30 H 0.086 0.914
31 H 0.022 0.978
32 H 0.063 0.937
33 H 0.076 0.924
34 H 0.026 0.974
35 H 0.075 0.925
36 H 0.020 0.980
37 H 0.016 0.984
38 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.750 10.900 11.271 16.122
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.148 4.148
3 C -0.130 4.130
4 H 0.095 0.905
5 C -0.024 4.024
6 O -0.301 6.301
7 C -0.030 4.030
8 C -0.059 4.059
9 H 0.072 0.928
10 N -0.256 5.256
11 C -0.133 4.133
12 C -0.061 4.061
13 C -0.044 4.044
14 C -0.560 4.560
15 H 0.088 0.912
16 C -0.133 4.133
17 N -0.542 5.542
18 Si 0.708 3.292
19 H -0.202 1.202
20 H -0.215 1.215
21 H -0.190 1.190
22 H 0.068 0.932
23 H 0.073 0.927
24 H 0.064 0.936
25 H 0.105 0.895
26 H 0.090 0.910
27 H 0.104 0.896
28 H 0.079 0.921
29 H 0.090 0.910
30 H 0.105 0.895
31 H 0.041 0.959
32 H 0.082 0.918
33 H 0.094 0.906
34 H 0.044 0.956
35 H 0.093 0.907
36 H 0.039 0.961
37 H 0.034 0.966
38 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -4.019 10.670 11.553 16.232
hybrid contribution 0.770 -0.404 -0.086 0.874
sum -3.249 10.267 11.467 15.730
Atomic orbital electron populations
1.21864 0.97023 1.01509 1.00813 1.21585 0.93754 0.94572 1.04913
1.22549 0.94507 0.98141 0.97753 0.90507 1.23510 0.89352 0.93582
0.95916 1.89100 1.15607 1.39150 1.86211 1.23718 0.89426 0.94268
0.95606 1.23017 0.95227 0.90206 0.97415 0.92836 1.62263 1.20841
1.17954 1.24562 1.22521 0.89058 1.02748 0.98932 1.22340 1.00606
0.97770 0.85411 1.19559 0.96422 0.90767 0.97629 1.21077 1.47828
0.94891 0.92244 0.91180 1.24991 0.94754 0.98057 0.95509 1.69912
1.49943 1.14337 1.20044 0.86759 0.78760 0.80448 0.83188 1.20236
1.21515 1.19011 0.93208 0.92718 0.93561 0.89462 0.91008 0.89635
0.92073 0.90988 0.89538 0.95935 0.91846 0.90555 0.95578 0.90720
0.96134 0.96610 0.92724
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.88 9.77 37.16 0.36 -1.51 16
2 C -0.11 -1.58 4.28 -26.73 -0.11 -1.69 16
3 C -0.11 -1.46 3.01 -89.05 -0.27 -1.73 16
4 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
5 C 0.05 0.65 6.42 37.94 0.24 0.89 16
6 O -0.38 -5.32 11.65 -35.23 -0.41 -5.73 16
7 C 0.05 0.60 6.02 37.93 0.23 0.83 16
8 C 0.05 0.72 2.96 -66.15 -0.20 0.53 16
9 H 0.05 0.79 7.98 -51.93 -0.41 0.38 16
10 N -0.53 -8.66 3.42 -233.00 -0.80 -9.46 16
11 C 0.02 0.23 8.77 60.06 0.53 0.76 16
12 C 0.07 1.27 3.91 -3.82 -0.01 1.26 16
13 C -0.01 -0.14 3.97 -27.89 -0.11 -0.25 16
14 C -0.52 -14.69 9.66 -34.44 -0.33 -15.03 16
15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16
16 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16
17 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16
18 Si 0.88 21.70 27.46 -169.99 -4.67 17.04 16
19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
21 H -0.27 -6.28 6.55 56.52 0.37 -5.91 16
22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
24 H 0.05 0.49 7.55 -51.93 -0.39 0.10 16
25 H 0.09 1.47 4.76 -51.93 -0.25 1.22 16
26 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16
27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
28 H 0.06 0.73 7.79 -51.93 -0.40 0.32 16
29 H 0.07 0.91 6.35 -51.93 -0.33 0.58 16
30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16
31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16
32 H 0.06 0.79 5.67 -51.93 -0.29 0.50 16
33 H 0.08 1.24 6.50 -51.93 -0.34 0.91 16
34 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16
35 H 0.07 1.47 5.68 -51.92 -0.29 1.17 16
36 H 0.02 0.49 7.56 -51.93 -0.39 0.09 16
37 H 0.02 0.37 5.63 -51.93 -0.29 0.08 16
38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16
LS Contribution 288.10 15.07 4.34 4.34
Total: -1.00 -29.90 288.10 -6.88 -36.79
By element:
Atomic # 1 Polarization: 4.43 SS G_CDS: -6.35 Total: -1.92 kcal
Atomic # 6 Polarization: -14.31 SS G_CDS: 0.23 Total: -14.08 kcal
Atomic # 7 Polarization: -36.41 SS G_CDS: -0.02 Total: -36.43 kcal
Atomic # 8 Polarization: -5.32 SS G_CDS: -0.41 Total: -5.73 kcal
Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.04 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -29.90 -6.88 -36.79 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000688218040.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.169 kcal
(2) G-P(sol) polarization free energy of solvation -29.902 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.071 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.955 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds