Wall clock time and date at job start Mon Mar 30 2020 03:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47499 * 2 1 4 4 H 1.09005 * 110.45536 * 305.47244 * 3 2 1 5 5 C 1.54488 * 110.62523 * 68.15233 * 3 2 1 6 6 O 1.44428 * 104.79985 * 142.68300 * 5 3 2 7 7 C 1.44640 * 105.37103 * 319.56876 * 6 5 3 8 8 C 1.54478 * 104.69707 * 40.34365 * 7 6 5 9 9 H 1.09006 * 110.50996 * 94.90750 * 8 7 6 10 10 N 1.46904 * 110.51238 * 217.47499 * 8 7 6 11 11 C 1.46891 * 110.99960 * 320.78630 * 10 8 7 12 12 C 1.46900 * 110.99998 * 196.83252 * 10 8 7 13 13 C 1.52999 * 109.47351 * 190.00399 * 12 10 8 14 14 C 1.50696 * 109.47266 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00260 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00003 * 180.27516 * 14 13 12 17 17 N 1.31512 * 120.00205 * 179.72035 * 16 14 13 18 18 Si 1.86806 * 119.99725 * 359.72074 * 16 14 13 19 19 H 1.48502 * 109.47272 * 90.00052 * 18 16 14 20 20 H 1.48502 * 109.46919 * 209.99946 * 18 16 14 21 21 H 1.48501 * 109.47257 * 329.99975 * 18 16 14 22 22 H 1.08996 * 109.46967 * 59.99970 * 1 2 3 23 23 H 1.08996 * 109.46979 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46714 * 299.99836 * 1 2 3 25 25 H 1.09007 * 109.47217 * 240.00203 * 2 1 3 26 26 H 1.08999 * 109.47467 * 119.99986 * 2 1 3 27 27 H 1.08995 * 110.37132 * 261.51118 * 5 3 2 28 28 H 1.08999 * 110.36833 * 23.85627 * 5 3 2 29 29 H 1.08997 * 110.34064 * 281.59178 * 7 6 5 30 30 H 1.08997 * 110.51087 * 159.18750 * 7 6 5 31 31 H 1.09002 * 109.47426 * 295.48004 * 11 10 8 32 32 H 1.09001 * 109.47688 * 55.48488 * 11 10 8 33 33 H 1.09005 * 109.47241 * 175.48638 * 11 10 8 34 34 H 1.08999 * 109.47422 * 70.00246 * 12 10 8 35 35 H 1.09010 * 109.47039 * 310.00063 * 12 10 8 36 36 H 1.08999 * 109.46982 * 59.99578 * 13 12 10 37 37 H 1.09001 * 109.46870 * 300.00040 * 13 12 10 38 38 H 0.96996 * 119.99918 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6083 1.9992 -0.8318 5 6 1.7142 2.1349 1.3420 6 8 2.8609 2.9697 1.6144 7 6 4.0102 2.1788 1.2328 8 6 3.5831 1.4711 -0.0723 9 1 3.9143 2.0400 -0.9412 10 7 4.1218 0.1052 -0.1172 11 6 5.4885 0.0603 0.4194 12 6 4.0744 -0.4348 -1.4826 13 6 4.4046 -1.9284 -1.4522 14 6 4.3566 -2.4821 -2.8529 15 1 4.1144 -1.8337 -3.6819 16 6 4.6158 -3.8179 -3.0754 17 7 4.5685 -4.3024 -4.2971 18 14 5.0341 -4.9396 -1.6414 19 1 3.7860 -5.5286 -1.0931 20 1 5.9309 -6.0271 -2.1088 21 1 5.7180 -4.1550 -0.5822 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.8156 2.7442 1.2462 28 1 1.5888 1.3933 2.1309 29 1 4.2383 1.4445 2.0054 30 1 4.8724 2.8206 1.0518 31 1 6.1493 0.6458 -0.2198 32 1 5.4969 0.4750 1.4274 33 1 5.8335 -0.9733 0.4489 34 1 4.8026 0.0857 -2.1046 35 1 3.0757 -0.2918 -1.8954 36 1 3.6764 -2.4488 -0.8301 37 1 5.4032 -2.0714 -1.0394 38 1 4.7505 -5.2422 -4.4536 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688218040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:15 Heat of formation + Delta-G solvation = -41.954993 kcal Electronic energy + Delta-G solvation = -16761.395403 eV Core-core repulsion = 14218.006891 eV Total energy + Delta-G solvation = -2543.388512 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97412 -36.66652 -34.11090 -33.02818 -30.80697 -28.90021 -27.82815 -26.52168 -23.64816 -23.39746 -21.37188 -20.12715 -19.26241 -16.87856 -16.52537 -15.94588 -15.52620 -14.68230 -14.40444 -14.21686 -13.69699 -13.41209 -13.06582 -12.84327 -12.55308 -12.47610 -11.93198 -11.67745 -11.42637 -11.36587 -11.11110 -10.90524 -10.56250 -10.43348 -10.28133 -10.10254 -9.81807 -9.60641 -9.56497 -9.19769 -8.54606 -7.88580 -6.06146 -4.04453 3.30834 3.38063 3.42093 3.91623 4.36776 4.44254 4.65268 4.85333 4.99674 5.22920 5.28351 5.36551 5.46724 5.53207 5.60329 5.63129 5.70441 5.75235 5.87697 5.90854 5.99123 6.05754 6.12625 6.28071 6.29198 6.34938 6.56309 6.70526 6.74489 6.87967 7.15085 7.27268 7.53951 7.58954 7.82287 8.50941 8.97940 9.56311 11.07225 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033656 B = 0.007134 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.754581 B = 3923.687466 C = 4286.324849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.110 4.110 4 H 0.077 0.923 5 C 0.053 3.947 6 O -0.382 6.382 7 C 0.047 3.953 8 C 0.051 3.949 9 H 0.054 0.946 10 N -0.531 5.531 11 C 0.015 3.985 12 C 0.065 3.935 13 C -0.006 4.006 14 C -0.522 4.522 15 H 0.070 0.930 16 C 0.068 3.932 17 N -0.903 5.903 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.265 1.265 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.022 0.978 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.020 0.980 37 H 0.016 0.984 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.750 10.900 11.271 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C -0.130 4.130 4 H 0.095 0.905 5 C -0.024 4.024 6 O -0.301 6.301 7 C -0.030 4.030 8 C -0.059 4.059 9 H 0.072 0.928 10 N -0.256 5.256 11 C -0.133 4.133 12 C -0.061 4.061 13 C -0.044 4.044 14 C -0.560 4.560 15 H 0.088 0.912 16 C -0.133 4.133 17 N -0.542 5.542 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.190 1.190 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.093 0.907 36 H 0.039 0.961 37 H 0.034 0.966 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.019 10.670 11.553 16.232 hybrid contribution 0.770 -0.404 -0.086 0.874 sum -3.249 10.267 11.467 15.730 Atomic orbital electron populations 1.21864 0.97023 1.01509 1.00813 1.21585 0.93754 0.94572 1.04913 1.22549 0.94507 0.98141 0.97753 0.90507 1.23510 0.89352 0.93582 0.95916 1.89100 1.15607 1.39150 1.86211 1.23718 0.89426 0.94268 0.95606 1.23017 0.95227 0.90206 0.97415 0.92836 1.62263 1.20841 1.17954 1.24562 1.22521 0.89058 1.02748 0.98932 1.22340 1.00606 0.97770 0.85411 1.19559 0.96422 0.90767 0.97629 1.21077 1.47828 0.94891 0.92244 0.91180 1.24991 0.94754 0.98057 0.95509 1.69912 1.49943 1.14337 1.20044 0.86759 0.78760 0.80448 0.83188 1.20236 1.21515 1.19011 0.93208 0.92718 0.93561 0.89462 0.91008 0.89635 0.92073 0.90988 0.89538 0.95935 0.91846 0.90555 0.95578 0.90720 0.96134 0.96610 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.77 37.16 0.36 -1.51 16 2 C -0.11 -1.58 4.28 -26.73 -0.11 -1.69 16 3 C -0.11 -1.46 3.01 -89.05 -0.27 -1.73 16 4 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.05 0.65 6.42 37.94 0.24 0.89 16 6 O -0.38 -5.32 11.65 -35.23 -0.41 -5.73 16 7 C 0.05 0.60 6.02 37.93 0.23 0.83 16 8 C 0.05 0.72 2.96 -66.15 -0.20 0.53 16 9 H 0.05 0.79 7.98 -51.93 -0.41 0.38 16 10 N -0.53 -8.66 3.42 -233.00 -0.80 -9.46 16 11 C 0.02 0.23 8.77 60.06 0.53 0.76 16 12 C 0.07 1.27 3.91 -3.82 -0.01 1.26 16 13 C -0.01 -0.14 3.97 -27.89 -0.11 -0.25 16 14 C -0.52 -14.69 9.66 -34.44 -0.33 -15.03 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 18 Si 0.88 21.70 27.46 -169.99 -4.67 17.04 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.27 -6.28 6.55 56.52 0.37 -5.91 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.49 7.55 -51.93 -0.39 0.10 16 25 H 0.09 1.47 4.76 -51.93 -0.25 1.22 16 26 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.73 7.79 -51.93 -0.40 0.32 16 29 H 0.07 0.91 6.35 -51.93 -0.33 0.58 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.79 5.67 -51.93 -0.29 0.50 16 33 H 0.08 1.24 6.50 -51.93 -0.34 0.91 16 34 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 35 H 0.07 1.47 5.68 -51.92 -0.29 1.17 16 36 H 0.02 0.49 7.56 -51.93 -0.39 0.09 16 37 H 0.02 0.37 5.63 -51.93 -0.29 0.08 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 288.10 15.07 4.34 4.34 Total: -1.00 -29.90 288.10 -6.88 -36.79 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -6.35 Total: -1.92 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 0.23 Total: -14.08 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.02 Total: -36.43 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.41 Total: -5.73 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.90 -6.88 -36.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688218040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.169 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds