Wall clock time and date at job start Mon Mar 30 2020 03:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47499 * 2 1 4 4 H 1.09005 * 110.45536 * 305.47244 * 3 2 1 5 5 C 1.54488 * 110.62523 * 68.15233 * 3 2 1 6 6 O 1.44428 * 104.79985 * 142.68300 * 5 3 2 7 7 C 1.44640 * 105.37103 * 319.56876 * 6 5 3 8 8 C 1.54478 * 104.69707 * 40.34365 * 7 6 5 9 9 H 1.09006 * 110.50996 * 94.90750 * 8 7 6 10 10 N 1.46904 * 110.51238 * 217.47499 * 8 7 6 11 11 C 1.46891 * 110.99960 * 320.78630 * 10 8 7 12 12 C 1.46900 * 110.99998 * 196.83252 * 10 8 7 13 13 C 1.52999 * 109.47351 * 190.00399 * 12 10 8 14 14 C 1.50696 * 109.47266 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00260 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00003 * 180.27516 * 14 13 12 17 17 N 1.31512 * 120.00205 * 179.72035 * 16 14 13 18 18 Si 1.86806 * 119.99725 * 359.72074 * 16 14 13 19 19 H 1.48502 * 109.47272 * 90.00052 * 18 16 14 20 20 H 1.48502 * 109.46919 * 209.99946 * 18 16 14 21 21 H 1.48501 * 109.47257 * 329.99975 * 18 16 14 22 22 H 1.08996 * 109.46967 * 59.99970 * 1 2 3 23 23 H 1.08996 * 109.46979 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46714 * 299.99836 * 1 2 3 25 25 H 1.09007 * 109.47217 * 240.00203 * 2 1 3 26 26 H 1.08999 * 109.47467 * 119.99986 * 2 1 3 27 27 H 1.08995 * 110.37132 * 261.51118 * 5 3 2 28 28 H 1.08999 * 110.36833 * 23.85627 * 5 3 2 29 29 H 1.08997 * 110.34064 * 281.59178 * 7 6 5 30 30 H 1.08997 * 110.51087 * 159.18750 * 7 6 5 31 31 H 1.09002 * 109.47426 * 295.48004 * 11 10 8 32 32 H 1.09001 * 109.47688 * 55.48488 * 11 10 8 33 33 H 1.09005 * 109.47241 * 175.48638 * 11 10 8 34 34 H 1.08999 * 109.47422 * 70.00246 * 12 10 8 35 35 H 1.09010 * 109.47039 * 310.00063 * 12 10 8 36 36 H 1.08999 * 109.46982 * 59.99578 * 13 12 10 37 37 H 1.09001 * 109.46870 * 300.00040 * 13 12 10 38 38 H 0.96996 * 119.99918 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6083 1.9992 -0.8318 5 6 1.7142 2.1349 1.3420 6 8 2.8609 2.9697 1.6144 7 6 4.0102 2.1788 1.2328 8 6 3.5831 1.4711 -0.0723 9 1 3.9143 2.0400 -0.9412 10 7 4.1218 0.1052 -0.1172 11 6 5.4885 0.0603 0.4194 12 6 4.0744 -0.4348 -1.4826 13 6 4.4046 -1.9284 -1.4522 14 6 4.3566 -2.4821 -2.8529 15 1 4.1144 -1.8337 -3.6819 16 6 4.6158 -3.8179 -3.0754 17 7 4.5685 -4.3024 -4.2971 18 14 5.0341 -4.9396 -1.6414 19 1 3.7860 -5.5286 -1.0931 20 1 5.9309 -6.0271 -2.1088 21 1 5.7180 -4.1550 -0.5822 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.8156 2.7442 1.2462 28 1 1.5888 1.3933 2.1309 29 1 4.2383 1.4445 2.0054 30 1 4.8724 2.8206 1.0518 31 1 6.1493 0.6458 -0.2198 32 1 5.4969 0.4750 1.4274 33 1 5.8335 -0.9733 0.4489 34 1 4.8026 0.0857 -2.1046 35 1 3.0757 -0.2918 -1.8954 36 1 3.6764 -2.4488 -0.8301 37 1 5.4032 -2.0714 -1.0394 38 1 4.7505 -5.2422 -4.4536 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688218040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:14 Heat of formation + Delta-G solvation = -61.591331 kcal Electronic energy + Delta-G solvation = -16762.246899 eV Core-core repulsion = 14218.006891 eV Total energy + Delta-G solvation = -2544.240007 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.08276 -37.97228 -35.30495 -34.97840 -32.57729 -30.11014 -28.97011 -27.94221 -25.35840 -24.43836 -22.55200 -21.82717 -20.44918 -18.96887 -17.56241 -17.15377 -16.66361 -16.26604 -16.00402 -15.61391 -14.92024 -14.89160 -14.41607 -14.28363 -14.11020 -13.61172 -13.29000 -13.00303 -12.86518 -12.75603 -12.50771 -12.22859 -11.92009 -11.75046 -11.65263 -11.60875 -11.47081 -11.38226 -10.97014 -10.74899 -10.67640 -9.21499 -8.30068 -6.34108 1.36644 1.37405 1.49879 2.35920 2.80846 3.05871 3.18437 3.59474 3.82125 3.93986 4.16728 4.25037 4.33868 4.43464 4.46176 4.56470 4.61623 4.62708 4.69175 4.78244 4.85652 4.90219 4.95865 4.98334 5.08514 5.10589 5.27757 5.35495 5.45163 5.49718 5.61474 5.68444 5.78101 6.09793 6.23984 6.30797 6.73831 7.30650 8.86714 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033656 B = 0.007134 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.754581 B = 3923.687466 C = 4286.324849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 C -0.110 4.110 4 H 0.079 0.921 5 C 0.057 3.943 6 O -0.394 6.394 7 C 0.052 3.948 8 C 0.046 3.954 9 H 0.047 0.953 10 N -0.531 5.531 11 C 0.013 3.987 12 C 0.080 3.920 13 C 0.003 3.997 14 C -0.532 4.532 15 H 0.030 0.970 16 C 0.007 3.993 17 N -0.951 5.951 18 Si 0.951 3.049 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.247 1.247 22 H 0.052 0.948 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.025 0.975 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.013 0.987 35 H 0.069 0.931 36 H 0.021 0.979 37 H 0.019 0.981 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 11.551 13.864 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.143 4.143 3 C -0.129 4.129 4 H 0.097 0.903 5 C -0.020 4.020 6 O -0.312 6.312 7 C -0.024 4.024 8 C -0.063 4.063 9 H 0.065 0.935 10 N -0.255 5.255 11 C -0.135 4.135 12 C -0.048 4.048 13 C -0.034 4.034 14 C -0.571 4.571 15 H 0.049 0.951 16 C -0.190 4.190 17 N -0.592 5.592 18 Si 0.774 3.226 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.170 1.170 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.043 0.957 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.031 0.969 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.142 11.346 14.159 18.611 hybrid contribution 0.781 -0.542 -0.966 1.355 sum -3.361 10.804 13.193 17.380 Atomic orbital electron populations 1.21826 0.95378 1.01625 1.01988 1.21457 0.95221 0.94776 1.02856 1.22552 0.93791 0.97672 0.98890 0.90253 1.23575 0.89595 0.93801 0.95000 1.89098 1.16210 1.39722 1.86219 1.23728 0.89697 0.94478 0.94534 1.23103 0.95958 0.88906 0.98326 0.93477 1.62176 1.21945 1.19484 1.21927 1.22597 0.88136 1.02187 1.00562 1.21999 0.99856 0.95496 0.87403 1.19403 0.96495 0.93098 0.94452 1.21414 1.47233 0.94789 0.93616 0.95137 1.25959 0.94630 0.99891 0.98476 1.70063 1.51483 1.14996 1.22612 0.85651 0.78990 0.78217 0.79730 1.19227 1.21054 1.17015 0.92917 0.93181 0.91471 0.92620 0.91780 0.87693 0.91465 0.90355 0.88024 0.95668 0.88867 0.91957 0.96879 0.91242 0.96047 0.96238 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.77 71.98 0.70 -2.70 16 2 C -0.11 -2.88 4.28 30.59 0.13 -2.75 16 3 C -0.11 -2.72 3.01 -9.78 -0.03 -2.75 16 4 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 5 C 0.06 1.21 6.42 72.49 0.47 1.68 16 6 O -0.39 -9.76 11.65 -148.98 -1.74 -11.50 16 7 C 0.05 1.19 6.02 72.48 0.44 1.63 16 8 C 0.05 1.24 2.96 45.93 0.14 1.37 16 9 H 0.05 1.34 7.98 -2.38 -0.02 1.32 16 10 N -0.53 -16.63 3.42 -891.07 -3.05 -19.67 16 11 C 0.01 0.36 8.77 127.69 1.12 1.48 16 12 C 0.08 3.14 3.91 86.30 0.34 3.48 16 13 C 0.00 0.15 3.97 29.85 0.12 0.27 16 14 C -0.53 -30.78 9.66 25.60 0.25 -30.53 16 15 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 16 C 0.01 0.43 5.47 84.66 0.46 0.89 16 17 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 18 Si 0.95 44.51 27.46 68.60 1.88 46.40 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 21 H -0.25 -10.71 6.55 99.48 0.65 -10.06 16 22 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.07 1.23 7.55 -2.39 -0.02 1.21 16 25 H 0.06 1.88 4.76 -2.38 -0.01 1.87 16 26 H 0.06 1.83 7.85 -2.39 -0.02 1.81 16 27 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 1.37 7.79 -2.39 -0.02 1.36 16 29 H 0.08 1.70 6.35 -2.39 -0.02 1.68 16 30 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 2.03 5.67 -2.39 -0.01 2.01 16 33 H 0.06 1.91 6.50 -2.38 -0.02 1.89 16 34 H 0.01 0.54 8.12 -2.39 -0.02 0.52 16 35 H 0.07 2.80 5.68 -2.38 -0.01 2.79 16 36 H 0.02 0.99 7.56 -2.39 -0.02 0.98 16 37 H 0.02 0.90 5.63 -2.39 -0.01 0.88 16 38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -64.80 288.10 2.49 -62.31 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.96 Total: 9.98 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 4.13 Total: -27.94 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -2.75 Total: -79.25 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.74 Total: -11.50 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.40 kcal Total: -64.80 2.49 -62.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688218040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.723 kcal (2) G-P(sol) polarization free energy of solvation -64.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds