Wall clock time and date at job start Mon Mar 30 2020 03:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47507 * 2 1 4 4 H 1.09007 * 110.32924 * 307.25395 * 3 2 1 5 5 C 1.54474 * 110.37669 * 185.00354 * 3 2 1 6 6 C 1.54513 * 104.06236 * 217.19163 * 5 3 2 7 7 H 1.08996 * 110.51378 * 118.63974 * 6 5 3 8 8 N 1.46901 * 110.50698 * 241.21617 * 6 5 3 9 9 C 1.46892 * 111.00234 * 60.41373 * 8 6 5 10 10 C 1.46905 * 110.99493 * 184.36544 * 8 6 5 11 11 H 1.08999 * 109.47178 * 299.99555 * 10 8 6 12 12 C 1.52998 * 109.47463 * 59.99906 * 10 8 6 13 13 C 1.50705 * 109.46840 * 179.97438 * 10 8 6 14 14 H 1.07999 * 119.99772 * 359.97438 * 13 10 8 15 15 C 1.37877 * 120.00054 * 179.97438 * 13 10 8 16 16 N 1.31522 * 119.99687 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00187 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47075 * 90.00206 * 17 15 13 19 19 H 1.48494 * 109.46985 * 210.00151 * 17 15 13 20 20 H 1.48501 * 109.47091 * 330.00205 * 17 15 13 21 21 C 1.54473 * 104.06240 * 359.97438 * 6 5 3 22 22 O 1.44423 * 104.80476 * 23.97973 * 21 6 5 23 23 H 1.08998 * 109.47588 * 59.99605 * 1 2 3 24 24 H 1.09006 * 109.47296 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46995 * 299.99601 * 1 2 3 26 26 H 1.09002 * 109.47199 * 239.99661 * 2 1 3 27 27 H 1.09002 * 109.47248 * 120.00059 * 2 1 3 28 28 H 1.08999 * 110.50992 * 335.83411 * 5 3 2 29 29 H 1.08997 * 110.51581 * 98.40442 * 5 3 2 30 30 H 1.08998 * 109.47672 * 67.81165 * 9 8 6 31 31 H 1.08998 * 109.47219 * 187.81724 * 9 8 6 32 32 H 1.09005 * 109.46790 * 307.81539 * 9 8 6 33 33 H 1.09008 * 109.46936 * 59.99689 * 12 10 8 34 34 H 1.08998 * 109.47082 * 179.97438 * 12 10 8 35 35 H 1.09003 * 109.47215 * 300.00088 * 12 10 8 36 36 H 0.97001 * 119.99552 * 180.02562 * 16 15 13 37 37 H 1.08998 * 110.37625 * 142.80993 * 21 6 5 38 38 H 1.09000 * 110.37628 * 265.14599 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5829 2.0058 -0.8136 5 6 3.5794 1.4686 -0.1263 6 6 4.0107 2.6419 0.7818 7 1 4.6523 2.2854 1.5876 8 7 4.6991 3.6747 -0.0039 9 6 3.8194 4.2148 -1.0490 10 6 5.2050 4.7466 0.8640 11 1 4.3721 5.2082 1.3944 12 6 6.1919 4.1606 1.8757 13 6 5.9039 5.7849 0.0246 14 1 5.9664 5.6607 -1.0464 15 6 6.4635 6.8933 0.6240 16 7 6.3877 7.0442 1.9283 17 14 7.3304 8.1800 -0.4164 18 1 6.3522 9.2126 -0.8432 19 1 8.4074 8.8184 0.3820 20 1 7.9207 7.5318 -1.6150 21 6 2.6809 3.1862 1.3488 22 8 1.7628 2.0742 1.2685 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.0078 0.5320 0.2305 29 1 3.8748 1.6536 -1.1590 30 1 3.0083 4.7772 -0.5865 31 1 4.3924 4.8735 -1.7016 32 1 3.4047 3.3942 -1.6346 33 1 7.0248 3.6990 1.3452 34 1 6.5675 4.9560 2.5194 35 1 5.6868 3.4094 2.4829 36 1 6.7811 7.8242 2.3499 37 1 2.8095 3.4979 2.3853 38 1 2.3225 4.0186 0.7431 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688515902.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:24 Heat of formation + Delta-G solvation = -44.400290 kcal Electronic energy + Delta-G solvation = -16812.044466 eV Core-core repulsion = 14268.549918 eV Total energy + Delta-G solvation = -2543.494548 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70937 -36.42294 -33.45538 -32.90759 -30.41581 -28.90783 -27.71939 -25.20765 -24.17878 -23.49906 -21.15139 -20.63891 -18.77577 -16.37956 -16.03861 -15.81248 -15.32595 -14.71441 -13.95028 -13.75657 -13.59588 -13.11828 -12.88841 -12.59585 -12.40857 -11.77817 -11.61947 -11.35315 -11.15045 -11.04093 -10.89010 -10.83856 -10.69796 -10.43849 -10.18882 -10.10972 -10.06227 -9.76477 -9.46601 -8.87312 -8.44277 -7.16506 -6.03083 -4.07807 3.29135 3.36043 3.39817 4.15099 4.39907 4.78284 4.97874 5.05337 5.19411 5.28600 5.35382 5.40028 5.48496 5.60324 5.70617 5.90332 5.93929 6.02681 6.06008 6.11522 6.22066 6.22578 6.34289 6.39719 6.52629 6.75744 6.83922 7.02721 7.06895 7.18487 7.49245 7.69525 7.80952 8.16368 8.29232 8.56638 8.98391 9.57420 11.03728 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.056520 B = 0.006189 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.277529 B = 4523.249517 C = 4669.637413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.072 3.928 4 H 0.062 0.938 5 C -0.145 4.145 6 C 0.052 3.948 7 H 0.093 0.907 8 N -0.525 5.525 9 C 0.031 3.969 10 C 0.210 3.790 11 H 0.001 0.999 12 C -0.134 4.134 13 C -0.505 4.505 14 H 0.063 0.937 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.011 3.989 22 O -0.376 6.376 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.018 0.982 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.085 0.915 35 H 0.008 0.992 36 H 0.260 0.740 37 H 0.087 0.913 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.570 -10.265 -3.343 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.014 3.986 4 H 0.080 0.920 5 C -0.183 4.183 6 C -0.058 4.058 7 H 0.111 0.889 8 N -0.250 5.250 9 C -0.117 4.117 10 C 0.105 3.895 11 H 0.018 0.982 12 C -0.192 4.192 13 C -0.543 4.543 14 H 0.081 0.919 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.067 4.067 22 O -0.295 6.295 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.036 0.964 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.104 0.896 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.255 -10.414 -3.269 13.107 hybrid contribution -0.022 1.300 -0.175 1.312 sum -7.278 -9.114 -3.444 12.161 Atomic orbital electron populations 1.21731 0.95644 1.01154 1.02183 1.21574 0.96337 0.94986 1.02466 1.23026 0.94737 0.93714 0.87117 0.91989 1.23046 0.94633 0.98906 1.01724 1.23091 0.93545 0.93249 0.95936 0.88852 1.62375 1.33967 1.14552 1.14058 1.22289 0.95597 0.98236 0.95565 1.19280 0.93212 0.86788 0.90256 0.98161 1.21857 0.99071 0.99296 0.98975 1.21151 1.35347 1.03965 0.93866 0.91885 1.24933 0.96223 0.98076 0.94982 1.69894 1.45740 1.28846 1.08733 0.86521 0.79297 0.81494 0.80247 1.20806 1.21250 1.19849 1.24213 0.90225 0.89922 1.02361 1.89047 1.59099 1.44214 1.37107 0.92995 0.93029 0.92130 0.90951 0.91215 0.90987 0.89726 0.96406 0.90666 0.93689 0.94641 0.89604 0.97321 0.92967 0.89499 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.85 37.15 0.37 -1.23 16 2 C -0.12 -1.34 5.56 -26.73 -0.15 -1.49 16 3 C 0.07 1.02 3.25 -25.96 -0.08 0.94 16 4 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 5 C -0.15 -2.18 5.67 -25.16 -0.14 -2.32 16 6 C 0.05 0.95 2.94 -66.14 -0.19 0.75 16 7 H 0.09 1.77 6.03 -51.93 -0.31 1.46 16 8 N -0.53 -11.09 4.60 -226.42 -1.04 -12.13 16 9 C 0.03 0.61 8.37 60.06 0.50 1.11 16 10 C 0.21 5.22 1.89 -68.86 -0.13 5.09 16 11 H 0.00 0.02 7.48 -51.93 -0.39 -0.37 16 12 C -0.13 -3.25 8.76 37.16 0.33 -2.92 16 13 C -0.50 -13.65 7.97 -34.44 -0.27 -13.92 16 14 H 0.06 1.70 6.40 -52.49 -0.34 1.36 16 15 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 16 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 17 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.01 0.20 6.18 37.93 0.23 0.43 16 22 O -0.38 -6.38 11.13 -35.23 -0.39 -6.77 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.72 8.01 -51.93 -0.42 0.30 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.99 7.87 -51.93 -0.41 0.58 16 29 H 0.08 1.27 6.56 -51.93 -0.34 0.93 16 30 H 0.02 0.35 6.15 -51.93 -0.32 0.03 16 31 H 0.07 1.54 6.38 -51.93 -0.33 1.21 16 32 H 0.04 0.74 6.20 -51.93 -0.32 0.42 16 33 H 0.03 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 35 H 0.01 0.17 6.27 -51.93 -0.33 -0.15 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.06 1.22 5.55 -51.93 -0.29 0.94 16 LS Contribution 287.93 15.07 4.34 4.34 Total: -1.00 -28.07 287.93 -7.33 -35.40 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.20 Total: -0.29 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 0.36 Total: -12.03 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.41 Total: -36.77 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.39 Total: -6.77 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.07 -7.33 -35.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688515902.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.005 kcal (2) G-P(sol) polarization free energy of solvation -28.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds