Wall clock time and date at job start Mon Mar 30 2020 03:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47507 * 2 1 4 4 H 1.09007 * 110.32924 * 307.25395 * 3 2 1 5 5 C 1.54474 * 110.37669 * 185.00354 * 3 2 1 6 6 C 1.54513 * 104.06236 * 217.19163 * 5 3 2 7 7 H 1.08996 * 110.51378 * 118.63974 * 6 5 3 8 8 N 1.46901 * 110.50698 * 241.21617 * 6 5 3 9 9 C 1.46892 * 111.00234 * 60.41373 * 8 6 5 10 10 C 1.46905 * 110.99493 * 184.36544 * 8 6 5 11 11 H 1.08999 * 109.47178 * 299.99555 * 10 8 6 12 12 C 1.52998 * 109.47463 * 59.99906 * 10 8 6 13 13 C 1.50705 * 109.46840 * 179.97438 * 10 8 6 14 14 H 1.07999 * 119.99772 * 359.97438 * 13 10 8 15 15 C 1.37877 * 120.00054 * 179.97438 * 13 10 8 16 16 N 1.31522 * 119.99687 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 120.00187 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47075 * 90.00206 * 17 15 13 19 19 H 1.48494 * 109.46985 * 210.00151 * 17 15 13 20 20 H 1.48501 * 109.47091 * 330.00205 * 17 15 13 21 21 C 1.54473 * 104.06240 * 359.97438 * 6 5 3 22 22 O 1.44423 * 104.80476 * 23.97973 * 21 6 5 23 23 H 1.08998 * 109.47588 * 59.99605 * 1 2 3 24 24 H 1.09006 * 109.47296 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46995 * 299.99601 * 1 2 3 26 26 H 1.09002 * 109.47199 * 239.99661 * 2 1 3 27 27 H 1.09002 * 109.47248 * 120.00059 * 2 1 3 28 28 H 1.08999 * 110.50992 * 335.83411 * 5 3 2 29 29 H 1.08997 * 110.51581 * 98.40442 * 5 3 2 30 30 H 1.08998 * 109.47672 * 67.81165 * 9 8 6 31 31 H 1.08998 * 109.47219 * 187.81724 * 9 8 6 32 32 H 1.09005 * 109.46790 * 307.81539 * 9 8 6 33 33 H 1.09008 * 109.46936 * 59.99689 * 12 10 8 34 34 H 1.08998 * 109.47082 * 179.97438 * 12 10 8 35 35 H 1.09003 * 109.47215 * 300.00088 * 12 10 8 36 36 H 0.97001 * 119.99552 * 180.02562 * 16 15 13 37 37 H 1.08998 * 110.37625 * 142.80993 * 21 6 5 38 38 H 1.09000 * 110.37628 * 265.14599 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5829 2.0058 -0.8136 5 6 3.5794 1.4686 -0.1263 6 6 4.0107 2.6419 0.7818 7 1 4.6523 2.2854 1.5876 8 7 4.6991 3.6747 -0.0039 9 6 3.8194 4.2148 -1.0490 10 6 5.2050 4.7466 0.8640 11 1 4.3721 5.2082 1.3944 12 6 6.1919 4.1606 1.8757 13 6 5.9039 5.7849 0.0246 14 1 5.9664 5.6607 -1.0464 15 6 6.4635 6.8933 0.6240 16 7 6.3877 7.0442 1.9283 17 14 7.3304 8.1800 -0.4164 18 1 6.3522 9.2126 -0.8432 19 1 8.4074 8.8184 0.3820 20 1 7.9207 7.5318 -1.6150 21 6 2.6809 3.1862 1.3488 22 8 1.7628 2.0742 1.2685 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.0078 0.5320 0.2305 29 1 3.8748 1.6536 -1.1590 30 1 3.0083 4.7772 -0.5865 31 1 4.3924 4.8735 -1.7016 32 1 3.4047 3.3942 -1.6346 33 1 7.0248 3.6990 1.3452 34 1 6.5675 4.9560 2.5194 35 1 5.6868 3.4094 2.4829 36 1 6.7811 7.8242 2.3499 37 1 2.8095 3.4979 2.3853 38 1 2.3225 4.0186 0.7431 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688515902.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:23 Heat of formation + Delta-G solvation = -62.304128 kcal Electronic energy + Delta-G solvation = -16812.820835 eV Core-core repulsion = 14268.549918 eV Total energy + Delta-G solvation = -2544.270916 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10017 -38.04100 -34.90743 -34.42351 -32.02601 -30.61696 -29.02830 -27.16546 -25.87014 -24.66915 -22.71323 -21.85183 -20.38442 -18.37259 -17.54557 -17.20007 -16.68173 -16.45834 -15.59430 -15.15854 -14.97568 -14.47793 -14.29266 -13.97812 -13.91181 -13.33740 -13.08341 -12.95726 -12.75690 -12.59477 -12.48575 -12.25004 -12.07962 -12.02433 -11.79106 -11.76849 -11.65956 -11.30680 -10.88609 -10.74184 -10.51211 -8.89153 -8.11306 -6.23032 1.42247 1.43683 1.53983 2.42124 2.86028 3.17841 3.43582 3.73360 3.76653 4.02456 4.07983 4.20877 4.35300 4.45320 4.54672 4.60381 4.67229 4.73046 4.79322 4.89545 4.98931 5.01815 5.04640 5.11002 5.11236 5.20137 5.24914 5.28402 5.45161 5.50240 5.72657 5.75229 5.90858 6.25092 6.37050 6.71976 6.91527 7.46317 8.94698 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.056520 B = 0.006189 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.277529 B = 4523.249517 C = 4669.637413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.068 3.932 4 H 0.066 0.934 5 C -0.136 4.136 6 C 0.047 3.953 7 H 0.085 0.915 8 N -0.529 5.529 9 C 0.035 3.965 10 C 0.215 3.785 11 H -0.031 1.031 12 C -0.123 4.123 13 C -0.520 4.520 14 H 0.061 0.939 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.959 3.041 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.268 1.268 21 C 0.018 3.982 22 O -0.385 6.385 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.010 0.990 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.059 0.941 35 H 0.028 0.972 36 H 0.261 0.739 37 H 0.075 0.925 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.892 -11.569 -4.743 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.011 3.989 4 H 0.084 0.916 5 C -0.173 4.173 6 C -0.062 4.062 7 H 0.103 0.897 8 N -0.253 5.253 9 C -0.113 4.113 10 C 0.109 3.891 11 H -0.014 1.014 12 C -0.181 4.181 13 C -0.558 4.558 14 H 0.079 0.921 15 C -0.187 4.187 16 N -0.561 5.561 17 Si 0.785 3.215 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.192 1.192 21 C -0.061 4.061 22 O -0.304 6.304 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.028 0.972 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.590 -11.738 -4.680 14.741 hybrid contribution 0.026 1.654 0.265 1.675 sum -7.564 -10.085 -4.414 13.357 Atomic orbital electron populations 1.21722 0.95051 1.02256 1.01583 1.21606 0.96846 0.92963 1.03576 1.23256 0.94268 0.95374 0.85996 0.91582 1.23018 0.95171 0.97961 1.01186 1.23152 0.93156 0.93530 0.96381 0.89727 1.62305 1.35320 1.13727 1.13985 1.22274 0.94828 0.99139 0.95018 1.19056 0.92143 0.87540 0.90383 1.01379 1.21677 0.98923 0.98807 0.98672 1.21449 1.35503 1.04863 0.94010 0.92129 1.25708 0.96941 1.00044 0.96041 1.70024 1.46483 1.29403 1.10147 0.85531 0.78188 0.78989 0.78770 1.20291 1.21013 1.19230 1.24005 0.90463 0.90120 1.01467 1.89052 1.58772 1.43796 1.38752 0.92457 0.91125 0.93889 0.88545 0.91357 0.89247 0.89134 0.97196 0.92075 0.90413 0.94949 0.92175 0.95303 0.92982 0.90639 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.85 71.98 0.71 -2.05 16 2 C -0.11 -2.23 5.56 30.59 0.17 -2.06 16 3 C 0.07 1.78 3.25 31.10 0.10 1.88 16 4 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 5 C -0.14 -3.72 5.67 31.61 0.18 -3.54 16 6 C 0.05 1.69 2.94 45.93 0.14 1.83 16 7 H 0.08 3.15 6.03 -2.39 -0.01 3.14 16 8 N -0.53 -22.11 4.60 -870.26 -4.01 -26.12 16 9 C 0.04 1.34 8.37 127.69 1.07 2.41 16 10 C 0.22 10.87 1.89 44.17 0.08 10.95 16 11 H -0.03 -1.75 7.48 -2.39 -0.02 -1.77 16 12 C -0.12 -6.03 8.76 71.98 0.63 -5.40 16 13 C -0.52 -28.35 7.97 25.60 0.20 -28.15 16 14 H 0.06 3.27 6.40 -2.91 -0.02 3.25 16 15 C 0.01 0.62 5.30 84.65 0.45 1.07 16 16 N -0.92 -52.98 11.32 21.45 0.24 -52.73 16 17 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 C 0.02 0.65 6.18 72.48 0.45 1.10 16 22 O -0.38 -12.62 11.13 -148.98 -1.66 -14.28 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.04 8.14 -2.38 -0.02 1.03 16 25 H 0.04 0.94 8.01 -2.39 -0.02 0.92 16 26 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 2.17 7.87 -2.39 -0.02 2.15 16 29 H 0.09 2.41 6.56 -2.39 -0.02 2.39 16 30 H 0.01 0.38 6.15 -2.39 -0.01 0.37 16 31 H 0.06 2.47 6.38 -2.39 -0.02 2.45 16 32 H 0.08 2.40 6.20 -2.38 -0.01 2.38 16 33 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 35 H 0.03 1.25 6.27 -2.39 -0.01 1.23 16 36 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 37 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.05 2.06 5.55 -2.39 -0.01 2.04 16 Total: -1.00 -59.83 287.93 1.80 -58.03 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.02 Total: 11.58 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.18 Total: -21.98 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -3.76 Total: -78.85 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -1.66 Total: -14.28 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -59.83 1.80 -58.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688515902.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.277 kcal (2) G-P(sol) polarization free energy of solvation -59.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds