Wall clock time and date at job start Mon Mar 30 2020 03:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 H 1.08997 * 110.27836 * 304.36543 * 3 2 1 5 5 C 1.54953 * 110.30813 * 182.16451 * 3 2 1 6 6 C 1.55310 * 100.94160 * 204.64188 * 5 3 2 7 7 H 1.08998 * 111.02052 * 275.87106 * 6 5 3 8 8 N 1.46899 * 110.84915 * 152.32507 * 6 5 3 9 9 C 1.46899 * 110.99657 * 299.93844 * 8 6 5 10 10 C 1.46894 * 111.00126 * 175.98341 * 8 6 5 11 11 H 1.09001 * 109.47113 * 59.99845 * 10 8 6 12 12 C 1.53005 * 109.47067 * 300.00320 * 10 8 6 13 13 C 1.50696 * 109.47090 * 179.97438 * 10 8 6 14 14 H 1.07993 * 120.00333 * 0.02562 * 13 10 8 15 15 C 1.37881 * 119.99960 * 180.02562 * 13 10 8 16 16 N 1.31514 * 119.99776 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00194 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.46843 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47341 * 119.99531 * 17 15 13 20 20 H 1.48496 * 109.47107 * 240.00194 * 17 15 13 21 21 C 1.54389 * 102.25217 * 34.13209 * 6 5 3 22 22 O 1.43240 * 107.58874 * 338.64634 * 21 6 5 23 23 H 1.09000 * 109.46766 * 60.00015 * 1 2 3 24 24 H 1.09000 * 109.46985 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46886 * 299.99804 * 1 2 3 26 26 H 1.09000 * 109.47215 * 239.99765 * 2 1 3 27 27 H 1.08997 * 109.47209 * 120.00242 * 2 1 3 28 28 H 1.08999 * 111.12219 * 86.72322 * 5 3 2 29 29 H 1.08996 * 111.12599 * 322.56246 * 5 3 2 30 30 H 1.08998 * 109.47213 * 289.60493 * 9 8 6 31 31 H 1.08996 * 109.47407 * 49.60978 * 9 8 6 32 32 H 1.09003 * 109.47304 * 169.61039 * 9 8 6 33 33 H 1.09001 * 109.46766 * 299.99737 * 12 10 8 34 34 H 1.08998 * 109.47358 * 59.99517 * 12 10 8 35 35 H 1.09004 * 109.47007 * 180.02562 * 12 10 8 36 36 H 0.97008 * 119.99688 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.82288 * 98.15745 * 21 6 5 38 38 H 1.08994 * 109.82993 * 219.12817 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6219 1.9910 -0.8440 5 6 3.5884 1.4654 -0.0549 6 6 3.8857 2.8475 0.5882 7 1 3.8197 3.6452 -0.1516 8 7 5.2026 2.8488 1.2391 9 6 5.2670 1.8336 2.2989 10 6 5.5283 4.1810 1.7657 11 1 4.7763 4.4761 2.4975 12 6 5.5473 5.1924 0.6178 13 6 6.8827 4.1431 2.4251 14 1 7.4456 3.2218 2.4502 15 6 7.4034 5.2848 2.9965 16 7 6.7182 6.4069 2.9655 17 14 9.0827 5.2381 3.8134 18 1 9.6436 3.8667 3.7139 19 1 9.9912 6.1955 3.1326 20 1 8.9482 5.6148 5.2435 21 6 2.7561 2.9725 1.6331 22 8 1.6989 2.0919 1.2350 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9456 1.4259 -1.0839 29 1 4.0146 0.6563 0.5382 30 1 4.6394 2.1412 3.1353 31 1 4.9120 0.8793 1.9100 32 1 6.2974 1.7271 2.6380 33 1 6.2992 4.8972 -0.1141 34 1 4.5674 5.2196 0.1411 35 1 5.7894 6.1808 1.0084 36 1 7.0847 7.2103 3.3672 37 1 3.1281 2.6831 2.6160 38 1 2.3912 3.9991 1.6621 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688515903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:25 Heat of formation + Delta-G solvation = -43.705076 kcal Electronic energy + Delta-G solvation = -16778.361144 eV Core-core repulsion = 14234.896743 eV Total energy + Delta-G solvation = -2543.464401 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.68030 -36.49903 -33.45220 -32.92212 -30.46907 -28.99258 -27.69222 -25.25063 -24.19926 -23.46426 -21.04070 -20.78563 -18.53517 -16.84066 -16.32929 -15.53494 -15.13986 -14.53336 -14.09079 -13.67056 -13.52519 -13.36138 -12.99794 -12.74334 -12.14684 -11.80481 -11.60909 -11.30628 -11.22193 -11.16828 -10.93266 -10.85699 -10.72077 -10.49032 -10.22686 -10.13666 -10.06240 -9.73004 -9.11968 -8.89051 -8.45227 -7.20323 -6.03747 -4.08393 3.28302 3.36297 3.40447 4.06312 4.38842 4.72569 4.92978 5.14990 5.16881 5.26487 5.30714 5.35189 5.51287 5.58706 5.70398 5.90712 5.93006 5.95303 6.07432 6.12380 6.21717 6.29968 6.31925 6.41951 6.55910 6.77652 6.83931 7.00979 7.09040 7.33792 7.47316 7.67244 7.80518 8.14706 8.27902 8.54945 8.98110 9.56945 11.03158 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.058175 B = 0.006109 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.188841 B = 4582.181334 C = 4729.019997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.078 3.922 4 H 0.065 0.935 5 C -0.147 4.147 6 C 0.052 3.948 7 H 0.095 0.905 8 N -0.523 5.523 9 C 0.031 3.969 10 C 0.210 3.790 11 H 0.001 0.999 12 C -0.134 4.134 13 C -0.504 4.504 14 H 0.064 0.936 15 C 0.059 3.941 16 N -0.893 5.893 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.016 3.984 22 O -0.383 6.383 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.020 0.980 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.007 0.993 35 H 0.086 0.914 36 H 0.260 0.740 37 H 0.075 0.925 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.021 -9.168 -5.301 13.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C 0.020 3.980 4 H 0.083 0.917 5 C -0.185 4.185 6 C -0.058 4.058 7 H 0.113 0.887 8 N -0.247 5.247 9 C -0.117 4.117 10 C 0.104 3.896 11 H 0.019 0.981 12 C -0.192 4.192 13 C -0.543 4.543 14 H 0.082 0.918 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.063 4.063 22 O -0.302 6.302 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.026 0.974 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.824 -9.117 -5.475 13.203 hybrid contribution 0.505 0.470 0.981 1.199 sum -7.319 -8.647 -4.494 12.188 Atomic orbital electron populations 1.21708 0.95610 1.01062 1.02194 1.21649 0.96474 0.95321 1.02354 1.22978 0.94252 0.93163 0.87626 0.91698 1.23417 0.94419 0.98567 1.02114 1.23301 0.89136 0.97063 0.96315 0.88703 1.62297 1.23004 1.08847 1.30536 1.22315 1.02063 0.94127 0.93158 1.19304 0.96028 0.82329 0.91916 0.98106 1.21859 0.96504 1.03011 0.97831 1.21185 1.02121 0.96103 1.34866 0.91802 1.24936 0.97665 0.95420 0.96215 1.69902 1.37762 1.00309 1.45242 0.86460 0.84021 0.78101 0.78946 1.19744 1.21017 1.21143 1.23947 0.88509 0.93679 1.00129 1.88344 1.42273 1.59784 1.39777 0.93033 0.93136 0.92063 0.91054 0.91411 0.90174 0.89828 0.96162 0.93420 0.90770 0.94615 0.97385 0.89559 0.93011 0.90710 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.83 37.16 0.37 -1.22 16 2 C -0.12 -1.39 5.68 -26.73 -0.15 -1.54 16 3 C 0.08 1.08 3.43 -25.70 -0.09 1.00 16 4 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.15 -2.19 6.05 -24.48 -0.15 -2.34 16 6 C 0.05 0.94 2.83 -65.76 -0.19 0.76 16 7 H 0.10 1.76 6.03 -51.93 -0.31 1.45 16 8 N -0.52 -11.08 4.66 -225.97 -1.05 -12.13 16 9 C 0.03 0.61 8.34 60.06 0.50 1.12 16 10 C 0.21 5.22 1.89 -68.87 -0.13 5.09 16 11 H 0.00 0.04 7.54 -51.93 -0.39 -0.35 16 12 C -0.13 -3.24 8.77 37.16 0.33 -2.92 16 13 C -0.50 -13.65 7.99 -34.44 -0.28 -13.93 16 14 H 0.06 1.73 6.42 -52.49 -0.34 1.39 16 15 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 16 N -0.89 -25.28 11.32 55.43 0.63 -24.66 16 17 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 C 0.02 0.28 6.45 37.89 0.24 0.53 16 22 O -0.38 -6.50 10.69 -35.23 -0.38 -6.87 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.73 7.91 -51.93 -0.41 0.32 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.25 5.67 -51.93 -0.29 0.95 16 30 H 0.02 0.40 6.23 -51.93 -0.32 0.08 16 31 H 0.05 0.80 5.69 -51.93 -0.30 0.51 16 32 H 0.07 1.52 6.49 -51.93 -0.34 1.19 16 33 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.01 0.16 6.26 -51.93 -0.32 -0.17 16 35 H 0.09 2.29 6.07 -51.93 -0.32 1.98 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.07 1.45 5.52 -51.93 -0.29 1.16 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 287.36 15.07 4.33 4.33 Total: -1.00 -28.14 287.36 -7.28 -35.41 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.15 Total: -0.31 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 0.36 Total: -11.94 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.43 Total: -36.79 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.38 Total: -6.87 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.14 -7.28 -35.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688515903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.290 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds