Wall clock time and date at job start Mon Mar 30 2020 03:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 H 1.08997 * 110.27836 * 304.36543 * 3 2 1 5 5 C 1.54953 * 110.30813 * 182.16451 * 3 2 1 6 6 C 1.55310 * 100.94160 * 204.64188 * 5 3 2 7 7 H 1.08998 * 111.02052 * 275.87106 * 6 5 3 8 8 N 1.46899 * 110.84915 * 152.32507 * 6 5 3 9 9 C 1.46899 * 110.99657 * 299.93844 * 8 6 5 10 10 C 1.46894 * 111.00126 * 175.98341 * 8 6 5 11 11 H 1.09001 * 109.47113 * 59.99845 * 10 8 6 12 12 C 1.53005 * 109.47067 * 300.00320 * 10 8 6 13 13 C 1.50696 * 109.47090 * 179.97438 * 10 8 6 14 14 H 1.07993 * 120.00333 * 0.02562 * 13 10 8 15 15 C 1.37881 * 119.99960 * 180.02562 * 13 10 8 16 16 N 1.31514 * 119.99776 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00194 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.46843 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47341 * 119.99531 * 17 15 13 20 20 H 1.48496 * 109.47107 * 240.00194 * 17 15 13 21 21 C 1.54389 * 102.25217 * 34.13209 * 6 5 3 22 22 O 1.43240 * 107.58874 * 338.64634 * 21 6 5 23 23 H 1.09000 * 109.46766 * 60.00015 * 1 2 3 24 24 H 1.09000 * 109.46985 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46886 * 299.99804 * 1 2 3 26 26 H 1.09000 * 109.47215 * 239.99765 * 2 1 3 27 27 H 1.08997 * 109.47209 * 120.00242 * 2 1 3 28 28 H 1.08999 * 111.12219 * 86.72322 * 5 3 2 29 29 H 1.08996 * 111.12599 * 322.56246 * 5 3 2 30 30 H 1.08998 * 109.47213 * 289.60493 * 9 8 6 31 31 H 1.08996 * 109.47407 * 49.60978 * 9 8 6 32 32 H 1.09003 * 109.47304 * 169.61039 * 9 8 6 33 33 H 1.09001 * 109.46766 * 299.99737 * 12 10 8 34 34 H 1.08998 * 109.47358 * 59.99517 * 12 10 8 35 35 H 1.09004 * 109.47007 * 180.02562 * 12 10 8 36 36 H 0.97008 * 119.99688 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.82288 * 98.15745 * 21 6 5 38 38 H 1.08994 * 109.82993 * 219.12817 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6219 1.9910 -0.8440 5 6 3.5884 1.4654 -0.0549 6 6 3.8857 2.8475 0.5882 7 1 3.8197 3.6452 -0.1516 8 7 5.2026 2.8488 1.2391 9 6 5.2670 1.8336 2.2989 10 6 5.5283 4.1810 1.7657 11 1 4.7763 4.4761 2.4975 12 6 5.5473 5.1924 0.6178 13 6 6.8827 4.1431 2.4251 14 1 7.4456 3.2218 2.4502 15 6 7.4034 5.2848 2.9965 16 7 6.7182 6.4069 2.9655 17 14 9.0827 5.2381 3.8134 18 1 9.6436 3.8667 3.7139 19 1 9.9912 6.1955 3.1326 20 1 8.9482 5.6148 5.2435 21 6 2.7561 2.9725 1.6331 22 8 1.6989 2.0919 1.2350 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.9456 1.4259 -1.0839 29 1 4.0146 0.6563 0.5382 30 1 4.6394 2.1412 3.1353 31 1 4.9120 0.8793 1.9100 32 1 6.2974 1.7271 2.6380 33 1 6.2992 4.8972 -0.1141 34 1 4.5674 5.2196 0.1411 35 1 5.7894 6.1808 1.0084 36 1 7.0847 7.2103 3.3672 37 1 3.1281 2.6831 2.6160 38 1 2.3912 3.9991 1.6621 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688515903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:25 Heat of formation + Delta-G solvation = -61.712208 kcal Electronic energy + Delta-G solvation = -16779.141991 eV Core-core repulsion = 14234.896743 eV Total energy + Delta-G solvation = -2544.245249 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06539 -38.11743 -34.93557 -34.41311 -32.06197 -30.70672 -29.00861 -27.20665 -25.91314 -24.60388 -22.72670 -21.91431 -20.13405 -18.49652 -17.99132 -17.00752 -16.86614 -15.97103 -15.69886 -15.18824 -14.93814 -14.65815 -14.41170 -14.05501 -13.68885 -13.42336 -13.11185 -12.92872 -12.78658 -12.59751 -12.44755 -12.38011 -12.10125 -12.01918 -11.88951 -11.78524 -11.72762 -11.21580 -10.87374 -10.52771 -10.43598 -8.94537 -8.12225 -6.23928 1.41171 1.43261 1.54687 2.41543 2.77965 3.16719 3.34795 3.65432 3.89000 3.94139 4.09656 4.18468 4.34026 4.41119 4.54189 4.62294 4.68828 4.73073 4.78259 4.91130 4.95173 5.00469 5.05949 5.11571 5.12602 5.16739 5.27686 5.34636 5.46119 5.49713 5.72515 5.76895 6.05634 6.23732 6.35366 6.68960 6.90607 7.45520 8.94048 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.058175 B = 0.006109 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.188841 B = 4582.181334 C = 4729.019997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.073 3.927 4 H 0.077 0.923 5 C -0.136 4.136 6 C 0.047 3.953 7 H 0.090 0.910 8 N -0.527 5.527 9 C 0.036 3.964 10 C 0.215 3.785 11 H -0.032 1.032 12 C -0.123 4.123 13 C -0.519 4.519 14 H 0.061 0.939 15 C 0.011 3.989 16 N -0.921 5.921 17 Si 0.960 3.040 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.283 1.283 21 C 0.024 3.976 22 O -0.393 6.393 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.009 0.991 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.060 0.940 36 H 0.261 0.739 37 H 0.059 0.941 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.044 -10.805 -6.342 14.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C 0.016 3.984 4 H 0.094 0.906 5 C -0.174 4.174 6 C -0.063 4.063 7 H 0.108 0.892 8 N -0.250 5.250 9 C -0.112 4.112 10 C 0.108 3.892 11 H -0.015 1.015 12 C -0.181 4.181 13 C -0.558 4.558 14 H 0.079 0.921 15 C -0.187 4.187 16 N -0.561 5.561 17 Si 0.786 3.214 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.209 1.209 21 C -0.055 4.055 22 O -0.312 6.312 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.115 0.885 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.104 0.896 30 H 0.028 0.972 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.859 -10.776 -6.527 14.848 hybrid contribution 0.438 0.950 1.274 1.649 sum -7.421 -9.825 -5.253 13.386 Atomic orbital electron populations 1.21696 0.95019 1.02098 1.01644 1.21673 0.96983 0.93476 1.03332 1.23246 0.93743 0.94717 0.86665 0.90557 1.23392 0.95067 0.96010 1.02881 1.23380 0.87542 0.99345 0.96008 0.89153 1.62226 1.25095 1.07137 1.30560 1.22295 1.01168 0.95020 0.92723 1.19080 0.94276 0.84487 0.91320 1.01499 1.21676 0.97577 1.01349 0.97474 1.21472 1.03057 0.96034 1.35224 0.92135 1.25710 1.01120 0.95106 0.96807 1.70029 1.39288 1.00823 1.45931 0.85472 0.79801 0.78272 0.77879 1.19069 1.20619 1.20857 1.23717 0.88893 0.93381 0.99482 1.88347 1.41832 1.59705 1.41348 0.92235 0.91364 0.93970 0.88528 0.91946 0.88168 0.89616 0.97223 0.90309 0.92081 0.94797 0.95237 0.92160 0.92964 0.92292 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.83 71.98 0.71 -2.04 16 2 C -0.12 -2.34 5.68 30.59 0.17 -2.16 16 3 C 0.07 1.87 3.43 31.26 0.11 1.97 16 4 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 5 C -0.14 -3.67 6.05 32.06 0.19 -3.47 16 6 C 0.05 1.66 2.83 46.18 0.13 1.79 16 7 H 0.09 3.26 6.03 -2.39 -0.01 3.25 16 8 N -0.53 -22.10 4.66 -868.82 -4.05 -26.15 16 9 C 0.04 1.38 8.34 127.69 1.06 2.45 16 10 C 0.22 10.88 1.89 44.17 0.08 10.96 16 11 H -0.03 -1.83 7.54 -2.39 -0.02 -1.85 16 12 C -0.12 -5.99 8.77 71.98 0.63 -5.36 16 13 C -0.52 -28.42 7.99 25.60 0.20 -28.22 16 14 H 0.06 3.29 6.42 -2.91 -0.02 3.27 16 15 C 0.01 0.61 5.30 84.66 0.45 1.06 16 16 N -0.92 -53.04 11.32 21.45 0.24 -52.79 16 17 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 C 0.02 0.87 6.45 72.45 0.47 1.34 16 22 O -0.39 -12.91 10.69 -148.98 -1.59 -14.50 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.04 0.94 7.91 -2.39 -0.02 0.92 16 26 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 28 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.09 2.29 5.67 -2.39 -0.01 2.28 16 30 H 0.01 0.38 6.23 -2.39 -0.01 0.37 16 31 H 0.08 2.52 5.69 -2.39 -0.01 2.50 16 32 H 0.06 2.49 6.49 -2.39 -0.02 2.48 16 33 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.03 1.26 6.26 -2.39 -0.01 1.25 16 35 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 36 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 37 H 0.06 2.33 5.52 -2.39 -0.01 2.32 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -60.21 287.36 1.87 -58.35 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.02 Total: 11.18 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 4.21 Total: -21.69 kcal Atomic # 7 Polarization: -75.14 SS G_CDS: -3.81 Total: -78.94 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -1.59 Total: -14.50 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -60.21 1.87 -58.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688515903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.363 kcal (2) G-P(sol) polarization free energy of solvation -60.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds