Wall clock time and date at job start Mon Mar 30 2020 03:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46860 * 2 1 4 4 H 1.08993 * 110.33144 * 304.20443 * 3 2 1 5 5 C 1.54480 * 110.46508 * 181.88760 * 3 2 1 6 6 C 1.54507 * 104.06576 * 217.14325 * 5 3 2 7 7 H 1.08997 * 110.62834 * 118.70366 * 6 5 3 8 8 N 1.46897 * 110.51203 * 241.35984 * 6 5 3 9 9 C 1.46905 * 111.00060 * 201.09610 * 8 6 5 10 10 H 1.09004 * 109.46681 * 324.99913 * 9 8 6 11 11 C 1.52997 * 109.47170 * 84.99377 * 9 8 6 12 12 C 1.52997 * 109.47150 * 204.99892 * 9 8 6 13 13 C 1.50701 * 109.47212 * 64.99640 * 12 9 8 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 9 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 9 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 C 1.54482 * 104.06233 * 0.02562 * 6 5 3 22 22 O 1.44423 * 110.37021 * 66.45535 * 3 2 1 23 23 H 1.08996 * 109.47471 * 59.99890 * 1 2 3 24 24 H 1.08999 * 109.46872 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47067 * 299.99778 * 1 2 3 26 26 H 1.08992 * 109.47014 * 240.00043 * 2 1 3 27 27 H 1.09001 * 109.47145 * 119.99787 * 2 1 3 28 28 H 1.08997 * 110.50671 * 98.49653 * 5 3 2 29 29 H 1.09001 * 110.51242 * 335.78922 * 5 3 2 30 30 H 1.00900 * 111.00494 * 77.13883 * 8 6 5 31 31 H 1.09002 * 109.47016 * 180.02562 * 11 9 8 32 32 H 1.09000 * 109.47400 * 300.00439 * 11 9 8 33 33 H 1.09004 * 109.46881 * 60.00659 * 11 9 8 34 34 H 1.09002 * 109.47153 * 304.99641 * 12 9 8 35 35 H 1.09001 * 109.46832 * 184.99832 * 12 9 8 36 36 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 37 37 H 1.08995 * 110.37310 * 142.81090 * 21 6 5 38 38 H 1.09005 * 110.37283 * 265.03884 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6245 1.9911 -0.8453 5 6 3.5838 1.4697 -0.0477 6 6 3.9666 2.6608 0.8590 7 1 4.5675 2.3231 1.7033 8 7 4.6902 3.6817 0.0895 9 6 5.4800 4.5473 0.9755 10 1 4.9453 4.6905 1.9145 11 6 6.8340 3.8919 1.2545 12 6 5.6988 5.9032 0.3013 13 6 4.3740 6.6026 0.1377 14 1 3.4667 6.1277 0.4808 15 6 4.3204 7.8492 -0.4489 16 7 5.4253 8.4276 -0.8661 17 14 2.6784 8.7165 -0.6509 18 1 2.4045 9.5441 0.5512 19 1 2.7235 9.5882 -1.8523 20 1 1.6017 7.7066 -0.8124 21 6 2.6088 3.2120 1.3477 22 8 1.6976 2.0968 1.2412 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.9314 1.6383 -1.0669 29 1 3.9945 0.5409 0.3483 30 1 4.0557 4.2256 -0.4759 31 1 7.4198 4.5339 1.9123 32 1 6.6780 2.9259 1.7348 33 1 7.3687 3.7486 0.3155 34 1 6.1537 5.7529 -0.6778 35 1 6.3582 6.5135 0.9184 36 1 5.3876 9.3045 -1.2792 37 1 2.6844 3.5433 2.3834 38 1 2.2810 4.0333 0.7104 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688517441.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:37 Heat of formation + Delta-G solvation = -89.588999 kcal Electronic energy + Delta-G solvation = -16383.774109 eV Core-core repulsion = 13838.320032 eV Total energy + Delta-G solvation = -2545.454077 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.74191 -37.88986 -34.93447 -34.41953 -33.06727 -29.96051 -29.31240 -27.97032 -25.12329 -24.55548 -22.11792 -21.56045 -21.18811 -18.51194 -17.46760 -17.07934 -16.67589 -16.50408 -15.84847 -15.20389 -14.79587 -14.49335 -14.14707 -13.98016 -13.61269 -13.54214 -13.35464 -13.04321 -13.01701 -12.61433 -12.38748 -12.37772 -12.26211 -12.12222 -11.82099 -11.62140 -11.56674 -11.16745 -10.99329 -10.76010 -10.58396 -9.19930 -8.20275 -6.30292 1.38183 1.38923 1.48885 2.38680 2.87111 3.12891 3.46805 3.72463 3.78892 4.01822 4.12571 4.21883 4.33552 4.38540 4.47606 4.58309 4.61418 4.70818 4.78707 4.83598 4.93535 5.00582 5.10002 5.11912 5.15698 5.21554 5.24885 5.34730 5.44273 5.48842 5.55652 5.84027 5.87838 6.20024 6.39652 6.58059 6.85083 7.38526 8.91325 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025387 B = 0.007185 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.640900 B = 3896.085400 C = 4726.995671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C 0.065 3.935 4 H 0.060 0.940 5 C -0.133 4.133 6 C 0.058 3.942 7 H 0.091 0.909 8 N -0.671 5.671 9 C 0.094 3.906 10 H 0.027 0.973 11 C -0.128 4.128 12 C 0.027 3.973 13 C -0.532 4.532 14 H 0.058 0.942 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.955 3.045 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.265 1.265 21 C 0.018 3.982 22 O -0.386 6.386 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.344 0.656 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.050 0.950 34 H -0.002 1.002 35 H -0.005 1.005 36 H 0.263 0.737 37 H 0.088 0.912 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.975 -15.593 2.171 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C 0.008 3.992 4 H 0.078 0.922 5 C -0.171 4.171 6 C -0.053 4.053 7 H 0.109 0.891 8 N -0.304 5.304 9 C -0.015 4.015 10 H 0.045 0.955 11 C -0.186 4.186 12 C -0.011 4.011 13 C -0.570 4.570 14 H 0.076 0.924 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.780 3.220 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.189 1.189 21 C -0.060 4.060 22 O -0.304 6.304 23 H 0.071 0.929 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.112 0.888 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.164 0.836 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.017 0.983 35 H 0.014 0.986 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.548 -15.920 2.087 16.987 hybrid contribution -1.090 1.802 0.107 2.109 sum -6.638 -14.118 2.195 15.754 Atomic orbital electron populations 1.21718 0.95324 1.02177 1.01487 1.21593 0.96674 0.93003 1.03601 1.23255 0.94341 0.95024 0.86616 0.92247 1.22958 0.94758 0.98067 1.01348 1.22995 0.92709 0.93225 0.96338 0.89065 1.60740 1.28709 1.17426 1.23505 1.21456 0.94218 0.92272 0.93596 0.95489 1.21724 0.95963 0.99939 1.00982 1.19144 0.95735 0.91440 0.94756 1.21514 0.94122 1.02544 1.38831 0.92418 1.25836 0.99679 0.98404 0.95245 1.70085 1.28996 1.16282 1.41541 0.85596 0.80087 0.78639 0.77631 1.20182 1.20903 1.18896 1.24181 0.90171 0.89565 1.02115 1.89060 1.57370 1.42818 1.41193 0.92877 0.91121 0.93777 0.88772 0.90981 0.89650 0.88936 0.83569 0.92900 0.91945 0.93114 0.98333 0.98625 0.92848 0.89400 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.83 71.98 0.71 -2.09 16 2 C -0.11 -2.13 5.58 30.60 0.17 -1.96 16 3 C 0.07 1.63 3.27 31.10 0.10 1.74 16 4 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 5 C -0.13 -3.32 6.42 31.61 0.20 -3.11 16 6 C 0.06 1.76 3.20 45.93 0.15 1.91 16 7 H 0.09 2.62 7.20 -2.39 -0.02 2.60 16 8 N -0.67 -24.54 6.04 -464.29 -2.80 -27.34 16 9 C 0.09 3.78 2.46 44.91 0.11 3.89 16 10 H 0.03 1.10 7.74 -2.39 -0.02 1.08 16 11 C -0.13 -4.37 9.40 71.98 0.68 -3.69 16 12 C 0.03 1.37 4.57 29.85 0.14 1.50 16 13 C -0.53 -28.97 8.12 25.60 0.21 -28.76 16 14 H 0.06 3.01 7.49 -2.91 -0.02 2.99 16 15 C 0.01 0.38 5.46 84.66 0.46 0.84 16 16 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 17 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 C 0.02 0.59 7.14 72.49 0.52 1.11 16 22 O -0.39 -11.79 11.00 -148.98 -1.64 -13.43 16 23 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.04 0.96 7.91 -2.39 -0.02 0.94 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 2.18 7.97 -2.39 -0.02 2.16 16 29 H 0.09 1.94 7.88 -2.39 -0.02 1.92 16 30 H 0.34 14.04 6.65 -89.69 -0.60 13.44 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.80 7.45 -2.39 -0.02 1.79 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 36 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 37 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.05 1.63 7.61 -2.38 -0.02 1.61 16 Total: -1.00 -60.71 304.25 1.72 -58.99 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.41 Total: 20.00 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 3.44 Total: -28.63 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -2.52 Total: -82.76 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -1.64 Total: -13.43 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -60.71 1.72 -58.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688517441.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.598 kcal (2) G-P(sol) polarization free energy of solvation -60.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds