Wall clock time and date at job start Mon Mar 30 2020 03:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 H 1.08995 * 110.27901 * 304.35991 * 3 2 1 5 5 C 1.54951 * 110.39210 * 182.21644 * 3 2 1 6 6 C 1.55312 * 100.94225 * 204.59612 * 5 3 2 7 7 H 1.08999 * 110.84840 * 275.94257 * 6 5 3 8 8 N 1.46896 * 110.84760 * 152.32060 * 6 5 3 9 9 C 1.46903 * 110.99905 * 160.71846 * 8 6 5 10 10 H 1.08996 * 109.46912 * 34.99732 * 9 8 6 11 11 C 1.53003 * 109.46826 * 274.99868 * 9 8 6 12 12 C 1.52998 * 109.47283 * 155.00179 * 9 8 6 13 13 C 1.50703 * 109.47052 * 294.99776 * 12 9 8 14 14 H 1.07996 * 119.99562 * 359.97438 * 13 12 9 15 15 C 1.37873 * 119.99754 * 179.97438 * 13 12 9 16 16 N 1.31514 * 120.00470 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99656 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47342 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46911 * 120.00406 * 17 15 13 20 20 H 1.48500 * 109.47310 * 240.00323 * 17 15 13 21 21 C 1.54380 * 102.25056 * 34.13333 * 6 5 3 22 22 O 1.43245 * 107.59000 * 338.64209 * 21 6 5 23 23 H 1.08991 * 109.47265 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46930 * 300.00113 * 1 2 3 25 25 H 1.09005 * 109.47289 * 59.99639 * 1 2 3 26 26 H 1.09000 * 109.47391 * 240.00111 * 2 1 3 27 27 H 1.08996 * 109.47231 * 120.00159 * 2 1 3 28 28 H 1.09000 * 111.12523 * 322.51641 * 5 3 2 29 29 H 1.09000 * 111.12500 * 86.63759 * 5 3 2 30 30 H 1.00903 * 111.00296 * 36.76541 * 8 6 5 31 31 H 1.08995 * 109.46978 * 179.97438 * 11 9 8 32 32 H 1.08995 * 109.47116 * 300.00177 * 11 9 8 33 33 H 1.09003 * 109.46839 * 60.00012 * 11 9 8 34 34 H 1.09002 * 109.47302 * 54.99662 * 12 9 8 35 35 H 1.08995 * 109.46844 * 174.99590 * 12 9 8 36 36 H 0.96999 * 120.00201 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.83192 * 219.13077 * 21 6 5 38 38 H 1.09002 * 109.83458 * 98.15431 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6218 1.9910 -0.8440 5 6 3.5882 1.4678 -0.0562 6 6 3.8840 2.8506 0.5860 7 1 3.8142 3.6459 -0.1561 8 7 5.2014 2.8542 1.2360 9 6 5.6856 4.2265 1.4368 10 1 4.8425 4.8802 1.6601 11 6 6.3845 4.7119 0.1652 12 6 6.6745 4.2527 2.6040 13 6 5.9563 3.8928 3.8790 14 1 4.9001 3.6682 3.8589 15 6 6.6476 3.8501 5.0711 16 7 7.9337 4.1240 5.0957 17 14 5.7573 3.4047 6.6517 18 1 4.3255 3.1433 6.3565 19 1 6.3714 2.1870 7.2394 20 1 5.8671 4.5290 7.6155 21 6 2.7551 2.9743 1.6318 22 8 1.6988 2.0920 1.2349 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 4.0161 0.6596 0.5370 29 1 3.9447 1.4276 -1.0855 30 1 5.8667 2.3097 0.7078 31 1 6.7434 5.7302 0.3141 32 1 7.2276 4.0581 -0.0581 33 1 5.6800 4.6932 -0.6663 34 1 7.4722 3.5328 2.4206 35 1 7.1008 5.2515 2.6966 36 1 8.4200 4.0944 5.9345 37 1 2.3886 4.0004 1.6607 38 1 3.1282 2.6859 2.6146 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688517443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:39 Heat of formation + Delta-G solvation = -86.899308 kcal Electronic energy + Delta-G solvation = -16333.715745 eV Core-core repulsion = 13788.378301 eV Total energy + Delta-G solvation = -2545.337443 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67019 -37.93774 -34.90417 -34.43324 -33.07419 -29.98215 -29.16633 -28.11658 -25.11190 -24.44375 -22.25837 -21.63531 -20.87826 -18.41818 -17.95714 -17.04779 -16.53873 -16.12578 -15.64777 -15.23025 -14.92055 -14.33156 -14.28480 -14.11904 -13.95778 -13.56612 -13.23153 -13.20059 -12.81247 -12.57441 -12.45024 -12.36125 -12.19767 -11.97012 -11.90116 -11.73756 -11.43021 -11.10972 -11.05855 -10.49024 -10.40491 -9.09399 -8.09957 -6.13889 1.39435 1.41083 1.53687 2.46871 2.85480 3.22263 3.34772 3.52219 3.86053 4.09834 4.18674 4.26651 4.27383 4.33922 4.45946 4.49841 4.58310 4.66543 4.79015 4.87109 4.94156 4.95689 5.08275 5.10666 5.14070 5.23843 5.28918 5.34440 5.45691 5.52116 5.69975 5.90579 6.13565 6.32464 6.47016 6.70551 7.00475 7.51728 9.02371 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025900 B = 0.007009 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.839416 B = 3993.743449 C = 4801.555958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.076 3.924 4 H 0.081 0.919 5 C -0.143 4.143 6 C 0.060 3.940 7 H 0.065 0.935 8 N -0.670 5.670 9 C 0.098 3.902 10 H 0.056 0.944 11 C -0.169 4.169 12 C 0.037 3.963 13 C -0.495 4.495 14 H 0.055 0.945 15 C -0.005 4.005 16 N -0.940 5.940 17 Si 0.952 3.048 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.281 1.281 21 C 0.059 3.941 22 O -0.399 6.399 23 H 0.065 0.935 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.344 0.656 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.066 0.934 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.258 0.742 37 H 0.060 0.940 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.943 -5.743 -14.108 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.019 3.981 4 H 0.099 0.901 5 C -0.181 4.181 6 C -0.051 4.051 7 H 0.083 0.917 8 N -0.302 5.302 9 C -0.011 4.011 10 H 0.075 0.925 11 C -0.228 4.228 12 C 0.000 4.000 13 C -0.533 4.533 14 H 0.073 0.927 15 C -0.201 4.201 16 N -0.582 5.582 17 Si 0.778 3.222 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.207 1.207 21 C -0.018 4.018 22 O -0.319 6.319 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.163 0.837 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.011 0.989 35 H 0.011 0.989 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.270 -5.822 -13.245 18.340 hybrid contribution 0.503 0.349 0.379 0.720 sum -10.767 -5.473 -12.867 17.648 Atomic orbital electron populations 1.21691 0.95045 1.02012 1.01710 1.21687 0.97018 0.94004 1.03076 1.23155 0.93665 0.94484 0.86821 0.90079 1.23424 0.95848 0.96273 1.02558 1.22974 0.90244 0.98025 0.93810 0.91692 1.60328 1.03344 1.13439 1.53070 1.21505 0.96821 0.88432 0.94383 0.92528 1.22408 1.00805 1.01806 0.97779 1.19000 0.93769 0.94392 0.92885 1.21514 0.95604 1.43381 0.92848 0.92665 1.25811 0.95568 0.96298 1.02426 1.70089 1.08981 1.52157 1.27012 0.85592 0.78965 0.77658 0.79976 1.19299 1.20893 1.20701 1.23090 0.87061 0.93107 0.98546 1.88381 1.42159 1.59940 1.41402 0.91633 0.94043 0.91934 0.88515 0.92540 0.90294 0.87531 0.83678 0.92555 0.92573 0.91540 0.98896 0.98918 0.93306 0.92160 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.83 71.98 0.71 -2.00 16 2 C -0.12 -2.35 5.68 30.59 0.17 -2.18 16 3 C 0.08 1.76 3.43 31.26 0.11 1.87 16 4 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 5 C -0.14 -3.28 6.03 32.06 0.19 -3.09 16 6 C 0.06 1.74 3.06 46.18 0.14 1.88 16 7 H 0.07 1.71 7.25 -2.39 -0.02 1.69 16 8 N -0.67 -23.71 5.76 -463.04 -2.66 -26.38 16 9 C 0.10 3.84 2.41 44.92 0.11 3.95 16 10 H 0.06 2.29 7.75 -2.39 -0.02 2.27 16 11 C -0.17 -5.23 9.15 71.98 0.66 -4.57 16 12 C 0.04 1.92 4.65 29.85 0.14 2.06 16 13 C -0.49 -28.32 8.84 25.60 0.23 -28.10 16 14 H 0.06 3.14 7.66 -2.91 -0.02 3.12 16 15 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 16 N -0.94 -58.22 13.29 21.45 0.28 -57.94 16 17 Si 0.95 46.40 29.54 68.60 2.03 48.43 16 18 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 C 0.06 2.00 7.39 72.45 0.54 2.54 16 22 O -0.40 -12.61 10.69 -148.98 -1.59 -14.21 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.04 0.93 7.91 -2.39 -0.02 0.91 16 25 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 2.00 8.06 -2.39 -0.02 1.98 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.34 11.05 8.25 -89.69 -0.74 10.31 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 33 H 0.07 1.68 7.46 -2.39 -0.02 1.66 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 38 H 0.05 2.21 7.94 -2.39 -0.02 2.19 16 Total: -1.00 -65.93 306.64 1.77 -64.16 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 0.26 Total: 13.42 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 3.45 Total: -27.49 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -2.38 Total: -84.31 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -1.59 Total: -14.21 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -65.93 1.77 -64.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688517443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.741 kcal (2) G-P(sol) polarization free energy of solvation -65.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds