Wall clock time and date at job start Mon Mar 30 2020 03:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 H 1.08998 * 110.33659 * 304.20735 * 3 2 1 5 5 C 1.54476 * 110.37362 * 181.83235 * 3 2 1 6 6 C 1.54506 * 104.06451 * 217.19411 * 5 3 2 7 7 H 1.08999 * 110.62893 * 118.70710 * 6 5 3 8 8 N 1.46905 * 110.51076 * 241.35854 * 6 5 3 9 9 C 1.46900 * 110.99850 * 300.04632 * 8 6 5 10 10 C 1.46906 * 111.00051 * 176.09665 * 8 6 5 11 11 C 1.52993 * 109.47378 * 189.99991 * 10 8 6 12 12 C 1.50696 * 109.47429 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99822 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00300 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47086 * 59.99960 * 16 14 12 18 18 H 1.48503 * 109.47151 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46879 * 299.99904 * 16 14 12 20 20 C 1.54476 * 104.06347 * 0.02562 * 6 5 3 21 21 O 1.44426 * 104.80470 * 23.97862 * 20 6 5 22 22 H 1.09003 * 109.47485 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47300 * 299.99925 * 1 2 3 24 24 H 1.09005 * 109.47191 * 59.99685 * 1 2 3 25 25 H 1.09002 * 109.46911 * 240.00739 * 2 1 3 26 26 H 1.08991 * 109.47097 * 120.00192 * 2 1 3 27 27 H 1.09004 * 110.50955 * 98.54851 * 5 3 2 28 28 H 1.09002 * 110.51153 * 335.84147 * 5 3 2 29 29 H 1.08996 * 109.47030 * 296.04770 * 9 8 6 30 30 H 1.08999 * 109.46702 * 56.04909 * 9 8 6 31 31 H 1.08996 * 109.46890 * 176.04778 * 9 8 6 32 32 H 1.09004 * 109.47040 * 309.99779 * 10 8 6 33 33 H 1.09000 * 109.47033 * 69.99731 * 10 8 6 34 34 H 1.09004 * 109.46862 * 299.99897 * 11 10 8 35 35 H 1.09004 * 109.46998 * 59.99419 * 11 10 8 36 36 H 0.97000 * 120.00540 * 179.97438 * 15 14 12 37 37 H 1.08998 * 110.37477 * 142.80969 * 20 6 5 38 38 H 1.09007 * 110.37199 * 265.03647 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6246 1.9911 -0.8452 5 6 3.5839 1.4670 -0.0463 6 6 3.9679 2.6570 0.8613 7 1 4.5675 2.3179 1.7060 8 7 4.6939 3.6771 0.0929 9 6 5.9264 3.1236 -0.4838 10 6 4.9833 4.8543 0.9227 11 6 5.5107 5.9851 0.0374 12 6 5.8070 7.1929 0.8885 13 1 5.6367 7.1573 1.9544 14 6 6.2966 8.3430 0.3066 15 7 6.5045 8.3862 -0.9913 16 14 6.6646 9.8400 1.3617 17 1 7.6879 9.4890 2.3791 18 1 7.1763 10.9376 0.5024 19 1 5.4215 10.2834 2.0424 20 6 2.6106 3.2103 1.3491 21 8 1.6979 2.0961 1.2420 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.9328 1.6356 -1.0651 28 1 3.9927 0.5373 0.3495 29 1 6.6021 2.8280 0.3187 30 1 5.6833 2.2533 -1.0933 31 1 6.4081 3.8790 -1.1046 32 1 4.0710 5.1796 1.4226 33 1 5.7347 4.5967 1.6692 34 1 6.4230 5.6598 -0.4626 35 1 4.7593 6.2426 -0.7092 36 1 6.8485 9.1954 -1.4008 37 1 2.6858 3.5408 2.3850 38 1 2.2848 4.0325 0.7119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688518331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:13 Heat of formation + Delta-G solvation = -57.843941 kcal Electronic energy + Delta-G solvation = -16164.191964 eV Core-core repulsion = 13620.114456 eV Total energy + Delta-G solvation = -2544.077508 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69359 -36.64375 -33.57987 -33.12481 -31.03428 -28.99317 -28.27526 -25.59648 -23.71307 -23.37065 -21.09049 -20.44162 -19.65247 -16.78634 -15.96189 -15.86170 -15.69233 -14.53070 -14.39576 -13.95323 -13.71015 -13.43397 -13.11494 -13.01843 -12.46685 -12.17363 -11.99002 -11.62569 -11.28831 -11.13103 -11.01682 -10.98593 -10.81385 -10.63576 -10.56300 -10.47640 -9.85125 -9.59432 -9.37381 -9.13750 -8.33649 -7.79492 -6.00154 -4.02809 3.33226 3.37655 3.39936 3.95497 4.38287 4.53115 4.61560 4.74432 5.07383 5.09233 5.25230 5.35047 5.35718 5.43178 5.57487 5.73153 5.78248 5.83408 5.87460 5.91643 5.94042 6.00814 6.10545 6.15583 6.21331 6.24356 6.43670 6.48028 6.93529 6.94095 7.44542 7.54864 7.77367 7.87488 8.06410 8.42276 9.04118 9.60909 11.11180 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.052074 B = 0.004935 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.571741 B = 5672.806077 C = 5908.178480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.077 3.923 4 H 0.070 0.930 5 C -0.145 4.145 6 C 0.049 3.951 7 H 0.047 0.953 8 N -0.533 5.533 9 C 0.025 3.975 10 C 0.059 3.941 11 C 0.029 3.971 12 C -0.524 4.524 13 H 0.053 0.947 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.054 3.946 21 O -0.375 6.375 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.018 0.982 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.020 0.980 34 H 0.017 0.983 35 H 0.024 0.976 36 H 0.261 0.739 37 H 0.088 0.912 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.133 -15.225 1.356 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C 0.019 3.981 4 H 0.088 0.912 5 C -0.183 4.183 6 C -0.060 4.060 7 H 0.065 0.935 8 N -0.259 5.259 9 C -0.123 4.123 10 C -0.067 4.067 11 C -0.009 4.009 12 C -0.562 4.562 13 H 0.071 0.929 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.023 4.023 21 O -0.294 6.294 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.548 -15.024 0.983 16.842 hybrid contribution 1.056 0.755 1.079 1.688 sum -6.492 -14.269 2.062 15.811 Atomic orbital electron populations 1.21720 0.95412 1.01219 1.02381 1.21592 0.96636 0.94839 1.02390 1.22994 0.93634 0.93600 0.87854 0.91190 1.23077 0.95870 0.97760 1.01577 1.22965 0.95814 0.92324 0.94892 0.93546 1.62261 1.22364 1.06105 1.35137 1.22410 0.90898 1.00057 0.98977 1.22408 0.98957 0.90219 0.95162 1.19085 0.96276 0.90675 0.94833 1.21153 1.43493 0.97528 0.94075 0.92857 1.24983 0.95620 0.98703 0.94920 1.69958 1.45393 1.28246 1.09639 0.86658 0.78690 0.82408 0.80233 1.20303 1.21258 1.20198 1.23462 0.87423 0.89738 1.01725 1.89085 1.56948 1.43342 1.40007 0.93019 0.92014 0.92828 0.90902 0.91375 0.89429 0.91129 0.96341 0.92328 0.90172 0.91969 0.96135 0.96442 0.95725 0.92926 0.89414 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.83 37.16 0.37 -1.07 16 2 C -0.12 -1.18 5.57 -26.73 -0.15 -1.33 16 3 C 0.08 0.97 3.28 -25.96 -0.09 0.88 16 4 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.14 -1.85 5.72 -25.17 -0.14 -1.99 16 6 C 0.05 0.76 2.83 -66.14 -0.19 0.57 16 7 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 8 N -0.53 -9.63 4.56 -233.00 -1.06 -10.69 16 9 C 0.02 0.41 9.06 60.06 0.54 0.95 16 10 C 0.06 1.25 4.76 -3.82 -0.02 1.23 16 11 C 0.03 0.74 4.90 -27.89 -0.14 0.61 16 12 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.05 0.82 5.93 37.93 0.23 1.04 16 21 O -0.37 -5.57 11.00 -35.23 -0.39 -5.96 16 22 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.66 7.91 -51.93 -0.41 0.25 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 1.12 6.49 -51.93 -0.34 0.78 16 28 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.82 6.25 -51.93 -0.32 0.49 16 31 H 0.08 1.48 6.47 -51.93 -0.34 1.14 16 32 H 0.06 1.28 6.77 -51.93 -0.35 0.93 16 33 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 34 H 0.02 0.47 6.55 -51.93 -0.34 0.13 16 35 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.23 7.89 -51.92 -0.41 0.82 16 LS Contribution 299.80 15.07 4.52 4.52 Total: -1.00 -29.89 299.80 -7.90 -37.79 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.69 Total: -3.51 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 0.00 Total: -12.67 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.33 Total: -36.81 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.39 Total: -5.96 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.89 -7.90 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688518331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.056 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds