Wall clock time and date at job start Mon Mar 30 2020 03:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 H 1.08998 * 110.33659 * 304.20735 * 3 2 1 5 5 C 1.54476 * 110.37362 * 181.83235 * 3 2 1 6 6 C 1.54506 * 104.06451 * 217.19411 * 5 3 2 7 7 H 1.08999 * 110.62893 * 118.70710 * 6 5 3 8 8 N 1.46905 * 110.51076 * 241.35854 * 6 5 3 9 9 C 1.46900 * 110.99850 * 300.04632 * 8 6 5 10 10 C 1.46906 * 111.00051 * 176.09665 * 8 6 5 11 11 C 1.52993 * 109.47378 * 189.99991 * 10 8 6 12 12 C 1.50696 * 109.47429 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99822 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00339 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00300 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47086 * 59.99960 * 16 14 12 18 18 H 1.48503 * 109.47151 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46879 * 299.99904 * 16 14 12 20 20 C 1.54476 * 104.06347 * 0.02562 * 6 5 3 21 21 O 1.44426 * 104.80470 * 23.97862 * 20 6 5 22 22 H 1.09003 * 109.47485 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47300 * 299.99925 * 1 2 3 24 24 H 1.09005 * 109.47191 * 59.99685 * 1 2 3 25 25 H 1.09002 * 109.46911 * 240.00739 * 2 1 3 26 26 H 1.08991 * 109.47097 * 120.00192 * 2 1 3 27 27 H 1.09004 * 110.50955 * 98.54851 * 5 3 2 28 28 H 1.09002 * 110.51153 * 335.84147 * 5 3 2 29 29 H 1.08996 * 109.47030 * 296.04770 * 9 8 6 30 30 H 1.08999 * 109.46702 * 56.04909 * 9 8 6 31 31 H 1.08996 * 109.46890 * 176.04778 * 9 8 6 32 32 H 1.09004 * 109.47040 * 309.99779 * 10 8 6 33 33 H 1.09000 * 109.47033 * 69.99731 * 10 8 6 34 34 H 1.09004 * 109.46862 * 299.99897 * 11 10 8 35 35 H 1.09004 * 109.46998 * 59.99419 * 11 10 8 36 36 H 0.97000 * 120.00540 * 179.97438 * 15 14 12 37 37 H 1.08998 * 110.37477 * 142.80969 * 20 6 5 38 38 H 1.09007 * 110.37199 * 265.03647 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6246 1.9911 -0.8452 5 6 3.5839 1.4670 -0.0463 6 6 3.9679 2.6570 0.8613 7 1 4.5675 2.3179 1.7060 8 7 4.6939 3.6771 0.0929 9 6 5.9264 3.1236 -0.4838 10 6 4.9833 4.8543 0.9227 11 6 5.5107 5.9851 0.0374 12 6 5.8070 7.1929 0.8885 13 1 5.6367 7.1573 1.9544 14 6 6.2966 8.3430 0.3066 15 7 6.5045 8.3862 -0.9913 16 14 6.6646 9.8400 1.3617 17 1 7.6879 9.4890 2.3791 18 1 7.1763 10.9376 0.5024 19 1 5.4215 10.2834 2.0424 20 6 2.6106 3.2103 1.3491 21 8 1.6979 2.0961 1.2420 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.9328 1.6356 -1.0651 28 1 3.9927 0.5373 0.3495 29 1 6.6021 2.8280 0.3187 30 1 5.6833 2.2533 -1.0933 31 1 6.4081 3.8790 -1.1046 32 1 4.0710 5.1796 1.4226 33 1 5.7347 4.5967 1.6692 34 1 6.4230 5.6598 -0.4626 35 1 4.7593 6.2426 -0.7092 36 1 6.8485 9.1954 -1.4008 37 1 2.6858 3.5408 2.3850 38 1 2.2848 4.0325 0.7119 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688518331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:13 Heat of formation + Delta-G solvation = -77.130273 kcal Electronic energy + Delta-G solvation = -16165.028282 eV Core-core repulsion = 13620.114456 eV Total energy + Delta-G solvation = -2544.913826 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.86135 -38.07327 -35.20162 -34.46225 -32.58909 -30.61619 -29.40303 -27.25518 -25.36475 -24.48227 -22.31569 -21.82860 -21.04271 -18.65985 -17.48843 -17.04221 -16.80443 -16.49240 -15.72961 -15.35133 -15.05605 -14.60163 -14.41665 -14.10551 -14.02833 -13.58275 -13.38195 -13.15309 -12.83218 -12.65972 -12.48301 -12.27466 -12.13697 -11.95605 -11.73679 -11.68122 -11.54007 -11.30381 -11.17797 -10.72129 -10.53515 -9.24980 -8.20092 -6.31497 1.40295 1.43340 1.51219 2.39919 2.79984 3.13389 3.17533 3.54267 3.73822 4.01467 4.18346 4.21582 4.27931 4.35881 4.44203 4.49042 4.61120 4.64293 4.73980 4.78685 4.87835 4.92079 4.92256 5.04007 5.08433 5.11553 5.14707 5.26382 5.45335 5.45817 5.63597 5.75770 5.85089 6.06435 6.28474 6.31343 6.85363 7.37630 8.91803 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.052074 B = 0.004935 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.571741 B = 5672.806077 C = 5908.178480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.071 3.929 4 H 0.063 0.937 5 C -0.137 4.137 6 C 0.048 3.952 7 H 0.052 0.948 8 N -0.544 5.544 9 C 0.027 3.973 10 C 0.076 3.924 11 C 0.037 3.963 12 C -0.547 4.547 13 H 0.060 0.940 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.965 3.035 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.267 1.267 20 C 0.055 3.945 21 O -0.384 6.384 22 H 0.069 0.931 23 H 0.045 0.955 24 H 0.053 0.947 25 H 0.094 0.906 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.024 0.976 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.020 0.980 34 H -0.004 1.004 35 H -0.008 1.008 36 H 0.264 0.736 37 H 0.093 0.907 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.299 -16.361 2.224 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C 0.014 3.986 4 H 0.081 0.919 5 C -0.175 4.175 6 C -0.061 4.061 7 H 0.070 0.930 8 N -0.269 5.269 9 C -0.121 4.121 10 C -0.052 4.052 11 C -0.001 4.001 12 C -0.585 4.585 13 H 0.078 0.922 14 C -0.195 4.195 15 N -0.571 5.571 16 Si 0.789 3.211 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.023 4.023 21 O -0.303 6.303 22 H 0.088 0.912 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.112 0.888 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.043 0.957 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.015 0.985 35 H 0.010 0.990 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.723 -16.183 1.855 18.027 hybrid contribution 1.076 1.061 0.758 1.691 sum -6.646 -15.123 2.614 16.724 Atomic orbital electron populations 1.21716 0.95200 1.02167 1.01625 1.21610 0.96818 0.93029 1.03543 1.23180 0.93678 0.94973 0.86775 0.91862 1.23067 0.95910 0.97369 1.01125 1.23040 0.95267 0.92354 0.95412 0.93013 1.62157 1.23196 1.06388 1.35167 1.22398 0.90359 1.00204 0.99109 1.22033 0.98680 0.90180 0.94261 1.18909 0.94459 0.92154 0.94532 1.21602 1.43599 0.98646 0.94693 0.92223 1.25940 0.95216 1.02122 0.96226 1.70096 1.46146 1.29284 1.11558 0.85506 0.78936 0.78150 0.78481 1.19167 1.20787 1.19175 1.23383 0.87608 0.89585 1.01698 1.89087 1.56986 1.43139 1.41109 0.91238 0.93618 0.92764 0.88797 0.91081 0.89259 0.88936 0.95709 0.89214 0.92864 0.91688 0.96141 0.98543 0.98977 0.92739 0.88839 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.83 71.98 0.71 -1.87 16 2 C -0.11 -1.98 5.57 30.59 0.17 -1.81 16 3 C 0.07 1.67 3.28 31.10 0.10 1.77 16 4 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 5 C -0.14 -3.16 5.72 31.61 0.18 -2.98 16 6 C 0.05 1.40 2.83 45.93 0.13 1.53 16 7 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 8 N -0.54 -19.44 4.56 -891.08 -4.06 -23.50 16 9 C 0.03 0.88 9.06 127.69 1.16 2.04 16 10 C 0.08 3.22 4.76 86.30 0.41 3.63 16 11 C 0.04 1.98 4.90 29.84 0.15 2.13 16 12 C -0.55 -31.41 9.11 25.60 0.23 -31.18 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 14 C 0.00 0.18 5.46 84.65 0.46 0.64 16 15 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 16 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 C 0.05 1.63 5.93 72.48 0.43 2.06 16 21 O -0.38 -10.97 11.00 -148.98 -1.64 -12.61 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.04 0.92 7.91 -2.39 -0.02 0.90 16 24 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 2.05 6.49 -2.39 -0.02 2.03 16 28 H 0.09 1.76 7.87 -2.39 -0.02 1.74 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.09 2.33 6.25 -2.39 -0.01 2.31 16 31 H 0.05 2.01 6.47 -2.39 -0.02 1.99 16 32 H 0.06 2.70 6.77 -2.38 -0.02 2.68 16 33 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 34 H 0.00 -0.21 6.55 -2.38 -0.02 -0.23 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.06 1.89 7.89 -2.38 -0.02 1.87 16 Total: -1.00 -64.41 299.80 1.74 -62.67 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.00 Total: 7.83 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 4.13 Total: -24.03 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -3.78 Total: -80.27 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -1.64 Total: -12.61 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -64.41 1.74 -62.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688518331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.457 kcal (2) G-P(sol) polarization free energy of solvation -64.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds