Wall clock time and date at job start Mon Mar 30 2020 03:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47282 * 2 1 4 4 H 1.08998 * 110.55728 * 56.42344 * 3 2 1 5 5 C 1.54994 * 110.75487 * 179.39735 * 3 2 1 6 6 C 1.54815 * 102.09409 * 155.58685 * 5 3 2 7 7 H 1.08997 * 110.59924 * 97.85021 * 6 5 3 8 8 N 1.46898 * 110.48560 * 220.44478 * 6 5 3 9 9 C 1.46901 * 111.00443 * 62.26721 * 8 6 5 10 10 C 1.46906 * 110.99820 * 186.22033 * 8 6 5 11 11 C 1.52996 * 109.47022 * 169.99926 * 10 8 6 12 12 C 1.50708 * 109.46924 * 180.02562 * 11 10 8 13 13 H 1.07994 * 119.99744 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99843 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99862 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46825 * 60.00144 * 16 14 12 18 18 H 1.48507 * 109.47151 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47380 * 300.00210 * 16 14 12 20 20 C 1.54095 * 104.18468 * 339.11708 * 6 5 3 21 21 O 1.43738 * 107.29684 * 357.97279 * 20 6 5 22 22 H 1.09003 * 109.47342 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47173 * 300.00367 * 1 2 3 24 24 H 1.08998 * 109.46881 * 60.00200 * 1 2 3 25 25 H 1.09005 * 109.47173 * 239.99633 * 2 1 3 26 26 H 1.08998 * 109.46881 * 119.99799 * 2 1 3 27 27 H 1.09007 * 110.90482 * 37.39010 * 5 3 2 28 28 H 1.08994 * 110.90929 * 273.78463 * 5 3 2 29 29 H 1.09002 * 109.47401 * 183.95136 * 9 8 6 30 30 H 1.09001 * 109.46874 * 63.95149 * 9 8 6 31 31 H 1.09004 * 109.46970 * 303.95282 * 9 8 6 32 32 H 1.08997 * 109.46995 * 289.99871 * 10 8 6 33 33 H 1.09001 * 109.46848 * 49.99877 * 10 8 6 34 34 H 1.08997 * 109.47190 * 299.99825 * 11 10 8 35 35 H 1.09001 * 109.47349 * 60.00258 * 11 10 8 36 36 H 0.96998 * 119.99904 * 179.97438 * 15 14 12 37 37 H 1.09011 * 109.87918 * 117.39655 * 20 6 5 38 38 H 1.09006 * 109.88178 * 238.39332 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6355 1.9915 0.8503 5 6 3.5895 1.4772 0.0152 6 6 3.8891 2.8603 -0.6123 7 1 4.0816 3.6003 0.1645 8 7 5.0322 2.7714 -1.5307 9 6 4.7401 1.8645 -2.6488 10 6 5.4197 4.1016 -2.0192 11 6 6.7517 4.0027 -2.7654 12 6 7.1495 5.3674 -3.2660 13 1 6.5158 6.2199 -3.0710 14 6 8.3224 5.5275 -3.9729 15 7 9.0943 4.4894 -4.2099 16 14 8.8151 7.2189 -4.5940 17 1 8.9606 8.1458 -3.4429 18 1 10.1081 7.1230 -5.3182 19 1 7.7688 7.7326 -5.5140 20 6 2.6028 3.2112 -1.3848 21 8 1.7006 2.1017 -1.2389 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.0025 0.6749 -0.5962 28 1 3.9698 1.4223 1.0352 29 1 5.6264 1.7624 -3.2750 30 1 3.9210 2.2713 -3.2420 31 1 4.4559 0.8870 -2.2590 32 1 4.6518 4.4784 -2.6948 33 1 5.5261 4.7821 -1.1744 34 1 7.5195 3.6260 -2.0898 35 1 6.6453 3.3222 -3.6102 36 1 9.9192 4.6020 -4.7075 37 1 2.1532 4.1119 -0.9665 38 1 2.8341 3.3677 -2.4384 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688518339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:15 Heat of formation + Delta-G solvation = -53.775193 kcal Electronic energy + Delta-G solvation = -16249.965436 eV Core-core repulsion = 13706.064362 eV Total energy + Delta-G solvation = -2543.901074 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94793 -36.56842 -33.61091 -33.09747 -31.06740 -29.07358 -27.82612 -25.88694 -24.11619 -23.39101 -21.02374 -20.54921 -19.30724 -16.86484 -16.44914 -15.82478 -15.32415 -14.67092 -14.47511 -14.28187 -13.72497 -13.59342 -12.99134 -12.76924 -12.30041 -12.12003 -11.80947 -11.56970 -11.47295 -11.16754 -11.10585 -11.03840 -10.90319 -10.85106 -10.56650 -10.42215 -9.86633 -9.54973 -9.36376 -9.13657 -8.32962 -7.72101 -5.99428 -4.02090 3.33535 3.37946 3.40174 3.87283 4.30874 4.49626 4.71191 4.82565 4.97652 5.03410 5.17382 5.25081 5.32107 5.36383 5.48154 5.69036 5.74009 5.77182 5.80313 5.83832 5.90110 6.03587 6.08574 6.15436 6.19917 6.34808 6.45363 6.54519 6.93316 6.96710 7.48469 7.53693 7.77995 7.88729 8.07574 8.42922 9.04875 9.61514 11.11909 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.070741 B = 0.004755 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.713420 B = 5886.880136 C = 6026.714620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.073 3.927 4 H 0.066 0.934 5 C -0.144 4.144 6 C 0.051 3.949 7 H 0.091 0.909 8 N -0.529 5.529 9 C 0.020 3.980 10 C 0.060 3.940 11 C 0.028 3.972 12 C -0.523 4.523 13 H 0.053 0.947 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.013 3.987 21 O -0.373 6.373 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.025 0.975 31 H 0.059 0.941 32 H 0.021 0.979 33 H 0.060 0.940 34 H 0.024 0.976 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.054 0.946 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 -7.242 8.446 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.015 3.985 4 H 0.083 0.917 5 C -0.182 4.182 6 C -0.059 4.059 7 H 0.109 0.891 8 N -0.252 5.252 9 C -0.128 4.128 10 C -0.066 4.066 11 C -0.009 4.009 12 C -0.562 4.562 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.065 4.065 21 O -0.292 6.292 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.443 -7.544 8.470 17.589 hybrid contribution -0.146 1.465 -0.701 1.631 sum -13.590 -6.079 7.769 16.792 Atomic orbital electron populations 1.21716 0.95461 1.01318 1.02189 1.21538 0.96507 0.94605 1.02696 1.23191 0.93925 0.93709 0.87651 0.91654 1.23272 0.94887 0.98081 1.01968 1.23138 0.89458 0.97291 0.95993 0.89092 1.62300 1.32639 1.12825 1.17475 1.22470 1.00872 0.96097 0.93331 1.22395 0.99413 0.86778 0.98058 1.19091 0.90186 0.96817 0.94823 1.21154 1.06052 0.94195 1.34831 0.92862 1.24988 0.96453 0.96674 0.96148 1.69962 1.13185 1.29507 1.40565 0.86655 0.77734 0.84585 0.78992 1.20233 1.21262 1.20290 1.23921 0.90635 0.89574 1.02395 1.88841 1.56345 1.43778 1.40225 0.92909 0.93012 0.92055 0.91117 0.90776 0.89453 0.90207 0.90323 0.95672 0.92226 0.96044 0.92121 0.95720 0.96397 0.92929 0.92760 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.83 37.16 0.37 -1.01 16 2 C -0.12 -1.14 5.72 -26.73 -0.15 -1.30 16 3 C 0.07 0.85 3.32 -25.68 -0.09 0.77 16 4 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 5 C -0.14 -1.81 6.05 -24.72 -0.15 -1.96 16 6 C 0.05 0.76 3.12 -66.19 -0.21 0.56 16 7 H 0.09 1.31 7.99 -51.93 -0.42 0.89 16 8 N -0.53 -9.63 4.77 -233.04 -1.11 -10.74 16 9 C 0.02 0.35 8.60 60.07 0.52 0.87 16 10 C 0.06 1.27 4.56 -3.82 -0.02 1.25 16 11 C 0.03 0.74 4.90 -27.88 -0.14 0.60 16 12 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.01 0.19 6.44 37.73 0.24 0.44 16 21 O -0.37 -5.40 10.89 -35.23 -0.38 -5.79 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.64 7.92 -51.93 -0.41 0.23 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 1.15 5.88 -51.93 -0.31 0.85 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.50 6.47 -51.93 -0.34 1.16 16 30 H 0.02 0.43 6.15 -51.93 -0.32 0.11 16 31 H 0.06 0.91 6.03 -51.93 -0.31 0.60 16 32 H 0.02 0.45 7.28 -51.93 -0.38 0.07 16 33 H 0.06 1.26 7.97 -51.93 -0.41 0.84 16 34 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.02 0.49 6.55 -51.93 -0.34 0.15 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 37 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 38 H 0.09 1.42 5.20 -51.93 -0.27 1.15 16 LS Contribution 295.55 15.07 4.45 4.45 Total: -1.00 -30.06 295.55 -7.79 -37.85 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -6.43 Total: -2.87 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.03 Total: -13.37 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.38 Total: -36.96 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.38 Total: -5.79 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.06 -7.79 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688518339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.927 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds