Wall clock time and date at job start Mon Mar 30 2020 03:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47282 * 2 1 4 4 H 1.08998 * 110.55728 * 56.42344 * 3 2 1 5 5 C 1.54994 * 110.75487 * 179.39735 * 3 2 1 6 6 C 1.54815 * 102.09409 * 155.58685 * 5 3 2 7 7 H 1.08997 * 110.59924 * 97.85021 * 6 5 3 8 8 N 1.46898 * 110.48560 * 220.44478 * 6 5 3 9 9 C 1.46901 * 111.00443 * 62.26721 * 8 6 5 10 10 C 1.46906 * 110.99820 * 186.22033 * 8 6 5 11 11 C 1.52996 * 109.47022 * 169.99926 * 10 8 6 12 12 C 1.50708 * 109.46924 * 180.02562 * 11 10 8 13 13 H 1.07994 * 119.99744 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99843 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00112 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99862 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46825 * 60.00144 * 16 14 12 18 18 H 1.48507 * 109.47151 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47380 * 300.00210 * 16 14 12 20 20 C 1.54095 * 104.18468 * 339.11708 * 6 5 3 21 21 O 1.43738 * 107.29684 * 357.97279 * 20 6 5 22 22 H 1.09003 * 109.47342 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47173 * 300.00367 * 1 2 3 24 24 H 1.08998 * 109.46881 * 60.00200 * 1 2 3 25 25 H 1.09005 * 109.47173 * 239.99633 * 2 1 3 26 26 H 1.08998 * 109.46881 * 119.99799 * 2 1 3 27 27 H 1.09007 * 110.90482 * 37.39010 * 5 3 2 28 28 H 1.08994 * 110.90929 * 273.78463 * 5 3 2 29 29 H 1.09002 * 109.47401 * 183.95136 * 9 8 6 30 30 H 1.09001 * 109.46874 * 63.95149 * 9 8 6 31 31 H 1.09004 * 109.46970 * 303.95282 * 9 8 6 32 32 H 1.08997 * 109.46995 * 289.99871 * 10 8 6 33 33 H 1.09001 * 109.46848 * 49.99877 * 10 8 6 34 34 H 1.08997 * 109.47190 * 299.99825 * 11 10 8 35 35 H 1.09001 * 109.47349 * 60.00258 * 11 10 8 36 36 H 0.96998 * 119.99904 * 179.97438 * 15 14 12 37 37 H 1.09011 * 109.87918 * 117.39655 * 20 6 5 38 38 H 1.09006 * 109.88178 * 238.39332 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6355 1.9915 0.8503 5 6 3.5895 1.4772 0.0152 6 6 3.8891 2.8603 -0.6123 7 1 4.0816 3.6003 0.1645 8 7 5.0322 2.7714 -1.5307 9 6 4.7401 1.8645 -2.6488 10 6 5.4197 4.1016 -2.0192 11 6 6.7517 4.0027 -2.7654 12 6 7.1495 5.3674 -3.2660 13 1 6.5158 6.2199 -3.0710 14 6 8.3224 5.5275 -3.9729 15 7 9.0943 4.4894 -4.2099 16 14 8.8151 7.2189 -4.5940 17 1 8.9606 8.1458 -3.4429 18 1 10.1081 7.1230 -5.3182 19 1 7.7688 7.7326 -5.5140 20 6 2.6028 3.2112 -1.3848 21 8 1.7006 2.1017 -1.2389 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.0025 0.6749 -0.5962 28 1 3.9698 1.4223 1.0352 29 1 5.6264 1.7624 -3.2750 30 1 3.9210 2.2713 -3.2420 31 1 4.4559 0.8870 -2.2590 32 1 4.6518 4.4784 -2.6948 33 1 5.5261 4.7821 -1.1744 34 1 7.5195 3.6260 -2.0898 35 1 6.6453 3.3222 -3.6102 36 1 9.9192 4.6020 -4.7075 37 1 2.1532 4.1119 -0.9665 38 1 2.8341 3.3677 -2.4384 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688518339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:14 Heat of formation + Delta-G solvation = -73.536944 kcal Electronic energy + Delta-G solvation = -16250.822370 eV Core-core repulsion = 13706.064362 eV Total energy + Delta-G solvation = -2544.758008 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.09425 -37.97103 -35.20731 -34.42792 -32.59519 -30.65208 -28.94811 -27.56214 -25.70204 -24.56766 -22.28621 -21.85781 -20.69393 -18.63684 -17.79281 -17.08375 -16.51420 -16.46260 -16.04941 -15.74632 -14.74444 -14.55915 -14.28320 -14.26807 -13.95615 -13.48728 -13.26310 -12.83601 -12.80350 -12.76227 -12.60708 -12.40080 -12.26120 -11.98963 -11.81591 -11.74559 -11.52485 -11.32167 -11.15194 -10.61450 -10.53346 -9.18454 -8.19891 -6.31429 1.40336 1.43518 1.51408 2.40129 2.80701 3.08987 3.13546 3.62105 3.85763 3.92127 4.07492 4.16165 4.31768 4.34144 4.39804 4.46766 4.53958 4.58738 4.71851 4.77852 4.80428 4.91419 5.00070 5.06490 5.09051 5.11999 5.19527 5.27804 5.44783 5.46269 5.64259 5.77688 5.92827 6.08752 6.24856 6.31461 6.85579 7.37685 8.92066 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.070741 B = 0.004755 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.713420 B = 5886.880136 C = 6026.714620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.072 3.928 4 H 0.081 0.919 5 C -0.138 4.138 6 C 0.047 3.953 7 H 0.100 0.900 8 N -0.539 5.539 9 C 0.027 3.973 10 C 0.077 3.923 11 C 0.036 3.964 12 C -0.546 4.546 13 H 0.061 0.939 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.267 1.267 20 C 0.018 3.982 21 O -0.388 6.388 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.051 0.949 30 H 0.025 0.975 31 H 0.081 0.919 32 H 0.022 0.978 33 H 0.066 0.934 34 H -0.007 1.007 35 H -0.006 1.006 36 H 0.264 0.736 37 H 0.067 0.933 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.974 -6.767 9.579 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.015 3.985 4 H 0.098 0.902 5 C -0.176 4.176 6 C -0.062 4.062 7 H 0.118 0.882 8 N -0.262 5.262 9 C -0.121 4.121 10 C -0.050 4.050 11 C -0.002 4.002 12 C -0.585 4.585 13 H 0.079 0.921 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.060 4.060 21 O -0.308 6.308 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.100 0.900 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.011 0.989 35 H 0.012 0.988 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.582 -7.077 9.617 18.847 hybrid contribution 0.175 1.244 -1.020 1.618 sum -14.407 -5.832 8.597 17.762 Atomic orbital electron populations 1.21697 0.94962 1.02102 1.01733 1.21578 0.96929 0.93392 1.03333 1.23393 0.93249 0.94810 0.87019 0.90154 1.23268 0.95641 0.96039 1.02644 1.23271 0.88228 0.99326 0.95363 0.88211 1.62204 1.34979 1.11156 1.17857 1.22383 0.99565 0.97105 0.93043 1.22019 0.96683 0.88661 0.97635 1.18923 0.92067 0.95416 0.93780 1.21604 1.06549 0.95245 1.35074 0.92128 1.25961 0.96394 1.01054 0.96221 1.70105 1.13688 1.32043 1.41313 0.85489 0.77505 0.79273 0.78700 1.19051 1.20830 1.19222 1.23799 0.90678 0.90330 1.01224 1.88838 1.56296 1.43862 1.41795 0.91572 0.92108 0.93835 0.92037 0.88589 0.90214 0.88250 0.92980 0.95622 0.90005 0.95987 0.91565 0.98891 0.98770 0.92751 0.91508 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.83 71.98 0.71 -1.67 16 2 C -0.11 -1.97 5.72 30.59 0.17 -1.80 16 3 C 0.07 1.51 3.32 31.28 0.10 1.62 16 4 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 5 C -0.14 -3.14 6.05 31.90 0.19 -2.95 16 6 C 0.05 1.34 3.12 45.91 0.14 1.48 16 7 H 0.10 2.65 7.99 -2.39 -0.02 2.63 16 8 N -0.54 -19.50 4.77 -891.22 -4.25 -23.76 16 9 C 0.03 0.94 8.60 127.69 1.10 2.04 16 10 C 0.08 3.28 4.56 86.30 0.39 3.68 16 11 C 0.04 1.92 4.90 29.85 0.15 2.07 16 12 C -0.55 -31.43 9.11 25.60 0.23 -31.20 16 13 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 14 C 0.00 0.10 5.46 84.65 0.46 0.56 16 15 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 16 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 20 C 0.02 0.51 6.44 72.35 0.47 0.98 16 21 O -0.39 -10.65 10.89 -148.98 -1.62 -12.27 16 22 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 24 H 0.04 0.85 7.92 -2.39 -0.02 0.83 16 25 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.08 1.95 5.88 -2.38 -0.01 1.93 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 2.08 6.47 -2.39 -0.02 2.06 16 30 H 0.03 0.89 6.15 -2.39 -0.01 0.87 16 31 H 0.08 2.46 6.03 -2.38 -0.01 2.45 16 32 H 0.02 0.93 7.28 -2.39 -0.02 0.91 16 33 H 0.07 2.72 7.97 -2.39 -0.02 2.70 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H -0.01 -0.35 6.55 -2.39 -0.02 -0.36 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.07 2.21 5.20 -2.38 -0.01 2.20 16 Total: -1.00 -64.86 295.55 1.57 -63.29 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.01 Total: 8.51 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 4.12 Total: -25.19 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -3.97 Total: -80.84 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -1.62 Total: -12.27 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -64.86 1.57 -63.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688518339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.243 kcal (2) G-P(sol) polarization free energy of solvation -64.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds