Wall clock time and date at job start Mon Mar 30 2020 03:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47070 * 2 1 4 4 H 1.09000 * 109.99034 * 53.92339 * 3 2 1 5 5 C 1.54108 * 109.87844 * 175.00036 * 3 2 1 6 6 C 1.54810 * 104.18439 * 121.45585 * 5 3 2 7 7 H 1.09000 * 110.90856 * 262.65079 * 6 5 3 8 8 N 1.46899 * 110.90785 * 139.08179 * 6 5 3 9 9 C 1.46901 * 111.00275 * 187.88006 * 8 6 5 10 10 C 1.46896 * 111.00149 * 63.91714 * 8 6 5 11 11 C 1.52997 * 109.47316 * 189.99966 * 10 8 6 12 12 C 1.50704 * 109.47171 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00128 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99925 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99967 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99998 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47072 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47260 * 120.00300 * 16 14 12 19 19 H 1.48504 * 109.47114 * 240.00569 * 16 14 12 20 20 C 1.54993 * 102.09461 * 20.87971 * 6 5 3 21 21 O 1.43745 * 109.88209 * 292.83447 * 3 2 1 22 22 H 1.09003 * 109.46939 * 299.99792 * 1 2 3 23 23 H 1.09001 * 109.47710 * 59.99403 * 1 2 3 24 24 H 1.08991 * 109.47445 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46939 * 240.00208 * 2 1 3 26 26 H 1.08999 * 109.47408 * 119.99881 * 2 1 3 27 27 H 1.08995 * 110.48956 * 240.12992 * 5 3 2 28 28 H 1.08999 * 110.48684 * 2.64802 * 5 3 2 29 29 H 1.08999 * 109.47349 * 54.43183 * 9 8 6 30 30 H 1.08999 * 109.47403 * 174.44187 * 9 8 6 31 31 H 1.09001 * 109.46440 * 294.43499 * 9 8 6 32 32 H 1.08992 * 109.47361 * 310.00719 * 10 8 6 33 33 H 1.09005 * 109.46729 * 70.00343 * 10 8 6 34 34 H 1.09001 * 109.47628 * 300.00589 * 11 10 8 35 35 H 1.09005 * 109.46913 * 60.00490 * 11 10 8 36 36 H 0.97000 * 119.99588 * 179.97438 * 15 14 12 37 37 H 1.09003 * 110.61486 * 81.47580 * 20 6 5 38 38 H 1.09001 * 110.62119 * 204.31425 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5954 1.9949 0.8279 5 6 3.5758 1.4553 0.1263 6 6 4.0544 2.2042 -1.1413 7 1 4.3468 1.5012 -1.9213 8 7 5.1583 3.1199 -0.8237 9 6 5.4898 3.9653 -1.9784 10 6 6.3383 2.3800 -0.3568 11 6 7.3711 3.3637 0.1968 12 6 8.5819 2.6047 0.6752 13 1 8.6120 1.5283 0.5923 14 6 9.6513 3.2844 1.2188 15 7 9.6144 4.5952 1.3202 16 14 11.1518 2.3435 1.8125 17 1 10.9451 0.8901 1.5888 18 1 12.3491 2.7946 1.0587 19 1 11.3542 2.5979 3.2615 20 6 2.7840 2.9910 -1.5528 21 8 1.7083 2.0783 -1.2458 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8803 1.9925 1.0245 28 1 3.9659 0.4376 0.1408 29 1 4.5924 4.4799 -2.3216 30 1 6.2410 4.6995 -1.6875 31 1 5.8822 3.3435 -2.7831 32 1 6.0433 1.6831 0.4276 33 1 6.7732 1.8269 -1.1894 34 1 7.6661 4.0606 -0.5877 35 1 6.9362 3.9168 1.0294 36 1 10.3666 5.0733 1.7030 37 1 2.6915 3.9047 -0.9656 38 1 2.8032 3.2211 -2.6181 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688518342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:16 Heat of formation + Delta-G solvation = -59.827493 kcal Electronic energy + Delta-G solvation = -16164.342455 eV Core-core repulsion = 13620.178933 eV Total energy + Delta-G solvation = -2544.163521 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.71915 -36.67097 -33.61722 -33.07177 -30.95823 -29.58745 -27.50682 -26.01218 -23.79274 -23.11428 -20.95720 -20.77235 -19.58206 -16.70883 -16.06694 -15.98629 -15.54597 -14.52324 -14.20487 -14.15076 -13.69515 -13.34070 -13.20065 -13.06433 -12.58506 -12.21450 -11.88141 -11.59491 -11.39662 -11.21125 -11.11564 -10.94579 -10.72321 -10.70041 -10.49858 -10.42605 -9.85439 -9.60955 -9.34750 -9.12106 -8.34879 -7.81020 -6.01139 -4.03556 3.30033 3.37544 3.41332 3.86749 4.36849 4.53819 4.66645 4.73957 5.04509 5.09977 5.23887 5.34950 5.35499 5.39776 5.58353 5.71177 5.76734 5.79710 5.86687 5.88567 5.94051 6.07479 6.12541 6.19439 6.24981 6.26056 6.43447 6.49287 6.92749 6.97490 7.43738 7.54009 7.76975 7.87373 8.05767 8.41818 9.03845 9.60271 11.10281 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041166 B = 0.005205 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.008217 B = 5378.586311 C = 5858.906106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.079 3.921 4 H 0.068 0.932 5 C -0.145 4.145 6 C 0.050 3.950 7 H 0.049 0.951 8 N -0.532 5.532 9 C 0.024 3.976 10 C 0.062 3.938 11 C 0.028 3.972 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.056 3.944 21 O -0.377 6.377 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.019 0.981 32 H 0.062 0.938 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.024 0.976 36 H 0.260 0.740 37 H 0.070 0.930 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.535 -5.744 -4.200 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.021 3.979 4 H 0.085 0.915 5 C -0.183 4.183 6 C -0.060 4.060 7 H 0.067 0.933 8 N -0.257 5.257 9 C -0.124 4.124 10 C -0.065 4.065 11 C -0.010 4.010 12 C -0.561 4.561 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.021 4.021 21 O -0.296 6.296 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.788 -5.338 -3.883 16.195 hybrid contribution 1.468 -0.913 -0.197 1.740 sum -13.321 -6.251 -4.080 15.270 Atomic orbital electron populations 1.21717 0.95542 1.01208 1.02158 1.21729 0.96523 0.95221 1.02533 1.22761 0.94319 0.93642 0.87181 0.91452 1.23032 0.94341 1.01245 0.99643 1.23135 0.92703 0.93966 0.96160 0.93298 1.62216 1.08138 1.22318 1.33043 1.22404 1.00982 0.97635 0.91393 1.22385 0.89296 0.97013 0.97782 1.19100 0.91497 0.93989 0.96390 1.21224 1.01057 0.93389 1.40383 0.92786 1.24991 0.98548 0.94834 0.95912 1.69984 1.31351 1.06522 1.45355 0.86547 0.82924 0.80107 0.78481 1.19785 1.21028 1.20961 1.23557 0.84835 0.93038 1.00707 1.88826 1.43548 1.57532 1.39655 0.92923 0.92142 0.93039 0.91368 0.90852 0.89149 0.90721 0.92477 0.90128 0.96198 0.91933 0.96232 0.96442 0.95724 0.93042 0.91132 0.89543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.83 37.15 0.37 -1.08 16 2 C -0.12 -1.31 5.42 -26.73 -0.14 -1.45 16 3 C 0.08 1.00 3.41 -26.15 -0.09 0.91 16 4 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 5 C -0.14 -2.03 5.11 -25.20 -0.13 -2.16 16 6 C 0.05 0.76 2.80 -65.71 -0.18 0.57 16 7 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 8 N -0.53 -9.58 4.60 -232.48 -1.07 -10.65 16 9 C 0.02 0.40 9.12 60.06 0.55 0.95 16 10 C 0.06 1.30 4.78 -3.83 -0.02 1.28 16 11 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 12 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 13 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 16 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.06 0.76 6.01 38.21 0.23 0.99 16 21 O -0.38 -5.31 10.84 -35.23 -0.38 -5.69 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.64 7.91 -51.93 -0.41 0.23 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 1.38 7.91 -51.93 -0.41 0.97 16 28 H 0.07 0.99 7.70 -51.93 -0.40 0.59 16 29 H 0.06 0.79 6.79 -51.93 -0.35 0.44 16 30 H 0.08 1.48 6.55 -51.93 -0.34 1.14 16 31 H 0.02 0.32 8.13 -51.93 -0.42 -0.11 16 32 H 0.06 1.29 6.90 -51.93 -0.36 0.93 16 33 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16 34 H 0.02 0.47 6.59 -51.93 -0.34 0.13 16 35 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.06 7.89 -51.93 -0.41 0.65 16 LS Contribution 301.19 15.07 4.54 4.54 Total: -1.00 -29.84 301.19 -7.96 -37.79 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -6.79 Total: -3.60 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 0.03 Total: -12.90 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.33 Total: -36.72 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.38 Total: -5.69 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.84 -7.96 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688518342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.033 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds