Wall clock time and date at job start Mon Mar 30 2020 03:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47070 * 2 1 4 4 H 1.09000 * 109.99034 * 53.92339 * 3 2 1 5 5 C 1.54108 * 109.87844 * 175.00036 * 3 2 1 6 6 C 1.54810 * 104.18439 * 121.45585 * 5 3 2 7 7 H 1.09000 * 110.90856 * 262.65079 * 6 5 3 8 8 N 1.46899 * 110.90785 * 139.08179 * 6 5 3 9 9 C 1.46901 * 111.00275 * 187.88006 * 8 6 5 10 10 C 1.46896 * 111.00149 * 63.91714 * 8 6 5 11 11 C 1.52997 * 109.47316 * 189.99966 * 10 8 6 12 12 C 1.50704 * 109.47171 * 180.02562 * 11 10 8 13 13 H 1.07995 * 120.00128 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99925 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99967 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99998 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47072 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47260 * 120.00300 * 16 14 12 19 19 H 1.48504 * 109.47114 * 240.00569 * 16 14 12 20 20 C 1.54993 * 102.09461 * 20.87971 * 6 5 3 21 21 O 1.43745 * 109.88209 * 292.83447 * 3 2 1 22 22 H 1.09003 * 109.46939 * 299.99792 * 1 2 3 23 23 H 1.09001 * 109.47710 * 59.99403 * 1 2 3 24 24 H 1.08991 * 109.47445 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46939 * 240.00208 * 2 1 3 26 26 H 1.08999 * 109.47408 * 119.99881 * 2 1 3 27 27 H 1.08995 * 110.48956 * 240.12992 * 5 3 2 28 28 H 1.08999 * 110.48684 * 2.64802 * 5 3 2 29 29 H 1.08999 * 109.47349 * 54.43183 * 9 8 6 30 30 H 1.08999 * 109.47403 * 174.44187 * 9 8 6 31 31 H 1.09001 * 109.46440 * 294.43499 * 9 8 6 32 32 H 1.08992 * 109.47361 * 310.00719 * 10 8 6 33 33 H 1.09005 * 109.46729 * 70.00343 * 10 8 6 34 34 H 1.09001 * 109.47628 * 300.00589 * 11 10 8 35 35 H 1.09005 * 109.46913 * 60.00490 * 11 10 8 36 36 H 0.97000 * 119.99588 * 179.97438 * 15 14 12 37 37 H 1.09003 * 110.61486 * 81.47580 * 20 6 5 38 38 H 1.09001 * 110.62119 * 204.31425 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5954 1.9949 0.8279 5 6 3.5758 1.4553 0.1263 6 6 4.0544 2.2042 -1.1413 7 1 4.3468 1.5012 -1.9213 8 7 5.1583 3.1199 -0.8237 9 6 5.4898 3.9653 -1.9784 10 6 6.3383 2.3800 -0.3568 11 6 7.3711 3.3637 0.1968 12 6 8.5819 2.6047 0.6752 13 1 8.6120 1.5283 0.5923 14 6 9.6513 3.2844 1.2188 15 7 9.6144 4.5952 1.3202 16 14 11.1518 2.3435 1.8125 17 1 10.9451 0.8901 1.5888 18 1 12.3491 2.7946 1.0587 19 1 11.3542 2.5979 3.2615 20 6 2.7840 2.9910 -1.5528 21 8 1.7083 2.0783 -1.2458 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8803 1.9925 1.0245 28 1 3.9659 0.4376 0.1408 29 1 4.5924 4.4799 -2.3216 30 1 6.2410 4.6995 -1.6875 31 1 5.8822 3.3435 -2.7831 32 1 6.0433 1.6831 0.4276 33 1 6.7732 1.8269 -1.1894 34 1 7.6661 4.0606 -0.5877 35 1 6.9362 3.9168 1.0294 36 1 10.3666 5.0733 1.7030 37 1 2.6915 3.9047 -0.9656 38 1 2.8032 3.2211 -2.6181 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688518342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:16 Heat of formation + Delta-G solvation = -78.921559 kcal Electronic energy + Delta-G solvation = -16165.170436 eV Core-core repulsion = 13620.178933 eV Total energy + Delta-G solvation = -2544.991502 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.86082 -38.10291 -35.20306 -34.46679 -32.45952 -31.14034 -28.69671 -27.60003 -25.58263 -24.10521 -22.41725 -21.94197 -21.04389 -18.62868 -17.50270 -17.15871 -16.57859 -16.48341 -15.68451 -15.57103 -14.87648 -14.54121 -14.31325 -14.29446 -14.06678 -13.82199 -13.31056 -13.10872 -12.83566 -12.71686 -12.47405 -12.40518 -12.13128 -11.90914 -11.82521 -11.63371 -11.47500 -11.31253 -11.19408 -10.61645 -10.54741 -9.27090 -8.20475 -6.31648 1.40298 1.40503 1.53710 2.39627 2.74509 3.13218 3.15364 3.57179 3.73250 3.99239 4.14607 4.19145 4.28252 4.32379 4.43755 4.50667 4.63323 4.66560 4.70181 4.76470 4.86682 4.89335 4.99057 5.02638 5.07940 5.12170 5.13963 5.27627 5.44723 5.45980 5.64121 5.76553 5.90068 6.05968 6.27214 6.30949 6.85592 7.37593 8.91852 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.041166 B = 0.005205 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.008217 B = 5378.586311 C = 5858.906106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.080 3.920 4 H 0.071 0.929 5 C -0.144 4.144 6 C 0.048 3.952 7 H 0.051 0.949 8 N -0.542 5.542 9 C 0.026 3.974 10 C 0.079 3.921 11 C 0.036 3.964 12 C -0.544 4.544 13 H 0.059 0.941 14 C 0.003 3.997 15 N -0.931 5.931 16 Si 0.965 3.035 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.278 1.278 20 C 0.061 3.939 21 O -0.384 6.384 22 H 0.056 0.944 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.018 0.982 34 H -0.004 1.004 35 H -0.007 1.007 36 H 0.264 0.736 37 H 0.067 0.933 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.078 -7.188 -4.381 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.022 3.978 4 H 0.089 0.911 5 C -0.182 4.182 6 C -0.061 4.061 7 H 0.069 0.931 8 N -0.267 5.267 9 C -0.122 4.122 10 C -0.048 4.048 11 C -0.002 4.002 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.195 4.195 15 N -0.571 5.571 16 Si 0.790 3.210 17 H -0.186 1.186 18 H -0.204 1.204 19 H -0.203 1.203 20 C -0.016 4.016 21 O -0.303 6.303 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.014 0.986 35 H 0.011 0.989 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.352 -6.789 -4.073 17.273 hybrid contribution 1.592 -0.423 -0.149 1.654 sum -13.760 -7.213 -4.223 16.099 Atomic orbital electron populations 1.21694 0.94700 1.02114 1.01862 1.21739 0.97238 0.93780 1.03047 1.22842 0.93197 0.94942 0.86837 0.91113 1.23029 0.95553 1.01238 0.98372 1.23207 0.92169 0.93889 0.96863 0.93071 1.62104 1.07559 1.22816 1.34224 1.22400 1.01777 0.97113 0.90940 1.22001 0.89394 0.95699 0.97690 1.18925 0.92375 0.94235 0.94625 1.21643 1.02096 0.93872 1.40613 0.92273 1.25942 1.01954 0.95754 0.95898 1.70115 1.32557 1.08310 1.46145 0.85396 0.78595 0.79058 0.77968 1.18586 1.20377 1.20326 1.23540 0.83738 0.92548 1.01742 1.88828 1.43593 1.57667 1.40223 0.92459 0.93187 0.91574 0.91621 0.89572 0.90710 0.89985 0.89404 0.92746 0.95607 0.91591 0.96370 0.98604 0.98891 0.92757 0.91453 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.83 71.98 0.71 -1.81 16 2 C -0.12 -2.32 5.42 30.59 0.17 -2.16 16 3 C 0.08 1.88 3.41 30.97 0.11 1.98 16 4 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 5 C -0.14 -3.87 5.11 31.59 0.16 -3.71 16 6 C 0.05 1.39 2.80 46.22 0.13 1.52 16 7 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 8 N -0.54 -19.36 4.60 -889.44 -4.10 -23.46 16 9 C 0.03 0.84 9.12 127.69 1.16 2.00 16 10 C 0.08 3.37 4.78 86.30 0.41 3.78 16 11 C 0.04 1.92 4.90 29.85 0.15 2.06 16 12 C -0.54 -31.08 9.11 25.60 0.23 -30.85 16 13 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 14 C 0.00 0.15 5.46 84.65 0.46 0.61 16 15 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 16 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 17 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 C 0.06 1.55 6.01 72.66 0.44 1.99 16 21 O -0.38 -10.09 10.84 -148.98 -1.61 -11.70 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.05 0.96 7.91 -2.39 -0.02 0.94 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 2.25 7.91 -2.39 -0.02 2.23 16 28 H 0.08 2.06 7.70 -2.39 -0.02 2.04 16 29 H 0.09 2.29 6.79 -2.39 -0.02 2.28 16 30 H 0.05 2.05 6.55 -2.39 -0.02 2.04 16 31 H 0.03 0.80 8.13 -2.39 -0.02 0.78 16 32 H 0.07 2.72 6.90 -2.39 -0.02 2.71 16 33 H 0.02 0.77 8.11 -2.38 -0.02 0.75 16 34 H 0.00 -0.25 6.59 -2.39 -0.02 -0.26 16 35 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 36 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.10 2.27 7.89 -2.39 -0.02 2.25 16 Total: -1.00 -63.74 301.19 1.72 -62.02 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.99 Total: 8.09 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 4.13 Total: -24.59 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -3.81 Total: -80.04 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -1.61 Total: -11.70 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -63.74 1.72 -62.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688518342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.905 kcal (2) G-P(sol) polarization free energy of solvation -63.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds