Wall clock time and date at job start Mon Mar 30 2020 03:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47094 * 2 1 4 4 H 1.08994 * 109.46991 * 180.83529 * 3 2 1 5 5 C 1.50697 * 109.47341 * 60.83354 * 3 2 1 6 6 H 1.07993 * 120.00325 * 240.00029 * 5 3 2 7 7 C 1.37875 * 119.99856 * 60.00040 * 5 3 2 8 8 N 1.31522 * 120.00106 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00140 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46930 * 60.00195 * 9 7 5 11 11 H 1.48499 * 109.47139 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47128 * 299.99998 * 9 7 5 13 13 N 1.46898 * 109.46927 * 300.83332 * 3 2 1 14 14 C 1.46899 * 110.99943 * 174.14581 * 13 3 2 15 15 C 1.46900 * 111.00401 * 298.09734 * 13 3 2 16 16 C 1.52998 * 109.47120 * 166.47266 * 15 13 3 17 17 H 1.08998 * 109.46887 * 60.01155 * 16 15 13 18 18 O 1.42894 * 109.47561 * 300.00425 * 16 15 13 19 19 C 1.53000 * 109.46929 * 180.02562 * 16 15 13 20 20 C 1.53006 * 117.49946 * 248.75180 * 19 16 15 21 21 C 1.53001 * 117.49761 * 180.09041 * 19 16 15 22 22 H 1.09005 * 109.47162 * 174.83574 * 1 2 3 23 23 H 1.09002 * 109.47478 * 54.83379 * 1 2 3 24 24 H 1.09001 * 109.47255 * 294.83950 * 1 2 3 25 25 H 1.09003 * 109.46662 * 119.99862 * 2 1 3 26 26 H 1.08995 * 109.47168 * 239.99524 * 2 1 3 27 27 H 0.96997 * 119.99841 * 180.02562 * 8 7 5 28 28 H 1.08996 * 109.47351 * 60.00362 * 14 13 3 29 29 H 1.09006 * 109.47500 * 180.02562 * 14 13 3 30 30 H 1.09005 * 109.47402 * 300.00159 * 14 13 3 31 31 H 1.08997 * 109.47216 * 286.48039 * 15 13 3 32 32 H 1.09007 * 109.46366 * 46.48185 * 15 13 3 33 33 H 0.96698 * 114.00170 * 300.00167 * 18 16 15 34 34 H 1.09003 * 115.55041 * 34.41920 * 19 16 15 35 35 H 1.09004 * 117.49620 * 359.97438 * 20 19 16 36 36 H 1.08992 * 117.50181 * 145.01935 * 20 19 16 37 37 H 1.08998 * 117.49992 * 214.97433 * 21 19 16 38 38 H 1.08999 * 117.49926 * 359.97438 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 -0.0150 5 6 1.5546 2.1469 1.2406 6 1 0.9325 3.0254 1.1544 7 6 1.9049 1.6698 2.4859 8 7 2.6630 0.6002 2.5910 9 14 1.3039 2.5434 4.0238 10 1 -0.1811 2.5439 4.0444 11 1 1.8149 1.8371 5.2259 12 1 1.7994 3.9433 4.0235 13 7 1.5339 2.1407 -1.1892 14 6 1.8878 3.5660 -1.1533 15 6 2.0249 1.5074 -2.4204 16 6 1.2277 2.0316 -3.6165 17 1 1.3510 3.1121 -3.6898 18 8 -0.1558 1.7208 -3.4400 19 6 1.7387 1.3714 -4.8987 20 6 2.4825 2.2565 -5.9009 21 6 1.0658 1.7684 -6.2142 22 1 -0.3634 -1.0235 -0.0925 23 1 -0.3634 0.5919 -0.8401 24 1 -0.3634 0.4317 0.9326 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 2.9090 0.2644 3.4671 28 1 2.9723 3.6704 -1.1218 29 1 1.5007 4.0592 -2.0450 30 1 1.4526 4.0262 -0.2661 31 1 3.0802 1.7444 -2.5550 32 1 1.9016 0.4268 -2.3471 33 1 -0.3402 0.7743 -3.3670 34 1 2.0716 0.3387 -4.7953 35 1 2.6074 3.3091 -5.6470 36 1 3.3044 1.8059 -6.4571 37 1 0.9564 0.9970 -6.9764 38 1 0.2588 2.4995 -6.1661 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690147818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:40 Heat of formation + Delta-G solvation = -24.151135 kcal Electronic energy + Delta-G solvation = -16771.054706 eV Core-core repulsion = 14228.438227 eV Total energy + Delta-G solvation = -2542.616478 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.67593 -36.75916 -34.98550 -32.89899 -30.92552 -28.84583 -26.16044 -25.33659 -22.97492 -22.35559 -21.54174 -20.55349 -18.81468 -16.30636 -16.16193 -15.54560 -15.33528 -14.46624 -14.31682 -13.63715 -13.45260 -13.23721 -12.69275 -12.23694 -11.91745 -11.79137 -11.55237 -11.14499 -10.96417 -10.89203 -10.71858 -10.62919 -10.44526 -10.20304 -10.03154 -9.97547 -9.77173 -9.41896 -9.22716 -8.73506 -8.37059 -7.04103 -5.97502 -4.00673 3.34108 3.38419 3.41645 3.75546 4.40941 4.57337 4.79614 4.94508 5.13867 5.18029 5.33988 5.51545 5.61260 5.61984 5.79902 5.86964 6.09168 6.13689 6.17983 6.28645 6.43194 6.49250 6.55664 6.67960 6.82507 6.87290 7.18957 7.37659 7.46553 7.70944 7.78421 7.87345 8.10766 8.23850 8.38411 8.65892 9.04823 9.63147 11.09096 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.046149 B = 0.006643 C = 0.006430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.578360 B = 4214.248701 C = 4353.532038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C 0.216 3.784 4 H -0.006 1.006 5 C -0.497 4.497 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.523 5.523 14 C 0.038 3.962 15 C 0.022 3.978 16 C 0.144 3.856 17 H 0.091 0.909 18 O -0.544 6.544 19 C -0.189 4.189 20 C -0.177 4.177 21 C -0.168 4.168 22 H 0.012 0.988 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.090 0.910 26 H 0.011 0.989 27 H 0.260 0.740 28 H 0.008 0.992 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.369 0.631 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.140 0.645 -12.649 12.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.148 4.148 3 C 0.110 3.890 4 H 0.012 0.988 5 C -0.535 4.535 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.247 5.247 14 C -0.111 4.111 15 C -0.107 4.107 16 C 0.084 3.916 17 H 0.108 0.892 18 O -0.348 6.348 19 C -0.208 4.208 20 C -0.214 4.214 21 C -0.205 4.205 22 H 0.032 0.968 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.108 0.892 26 H 0.029 0.971 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.215 0.785 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.618 1.147 -12.506 12.662 hybrid contribution 0.896 -0.209 0.905 1.291 sum -0.721 0.938 -11.601 11.661 Atomic orbital electron populations 1.21477 0.97133 0.97154 1.02197 1.21561 0.95344 0.98151 0.99722 1.19262 0.92437 0.91023 0.86284 0.98842 1.21071 1.30910 1.11868 0.89665 0.91947 1.24903 0.95244 0.95103 0.98902 1.69874 1.36841 1.22834 1.23807 0.86633 0.79205 0.79594 0.82413 1.20218 1.21448 1.20432 1.62010 1.59408 1.01739 1.01517 1.22227 0.97133 0.90601 1.01098 1.22776 0.95951 1.00202 0.91759 1.21442 0.81720 0.98637 0.89796 0.89158 1.86561 1.23699 1.29073 1.95446 1.23171 1.05097 1.00359 0.92203 1.22927 0.95367 0.99905 1.03214 1.22824 0.95846 1.03672 0.98162 0.96849 0.92865 0.92814 0.89181 0.97070 0.93029 0.97349 0.94028 0.90609 0.95563 0.90617 0.78452 0.87886 0.88826 0.89003 0.89163 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.49 37.16 0.35 -2.34 16 2 C -0.11 -2.60 5.20 -26.73 -0.14 -2.74 16 3 C 0.22 5.38 1.76 -68.87 -0.12 5.26 16 4 H -0.01 -0.17 8.14 -51.93 -0.42 -0.59 16 5 C -0.50 -13.39 6.80 -34.44 -0.23 -13.63 16 6 H 0.06 1.70 6.26 -52.49 -0.33 1.37 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -25.35 11.31 55.43 0.63 -24.72 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.52 -11.12 3.57 -236.29 -0.84 -11.96 16 14 C 0.04 0.77 9.04 60.06 0.54 1.31 16 15 C 0.02 0.40 4.47 -3.82 -0.02 0.38 16 16 C 0.14 2.17 3.11 -26.73 -0.08 2.09 16 17 H 0.09 1.42 6.36 -51.93 -0.33 1.09 16 18 O -0.54 -8.75 13.11 -35.23 -0.46 -9.21 16 19 C -0.19 -2.35 5.36 -90.62 -0.49 -2.83 16 20 C -0.18 -1.93 10.18 -26.69 -0.27 -2.20 16 21 C -0.17 -1.84 10.16 -26.69 -0.27 -2.11 16 22 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.05 1.13 7.42 -51.93 -0.39 0.74 16 24 H 0.05 1.30 7.43 -51.93 -0.39 0.91 16 25 H 0.09 2.40 6.05 -51.93 -0.31 2.09 16 26 H 0.01 0.24 6.22 -51.93 -0.32 -0.09 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.04 0.74 6.45 -51.93 -0.33 0.40 16 30 H 0.08 1.63 6.13 -51.93 -0.32 1.31 16 31 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.08 1.36 5.80 -51.92 -0.30 1.06 16 33 H 0.37 5.03 9.04 45.56 0.41 5.44 16 34 H 0.10 1.24 8.11 -51.93 -0.42 0.81 16 35 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 298.30 15.07 4.50 4.50 Total: -1.00 -28.52 298.30 -7.57 -36.09 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.54 Total: 4.25 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -0.82 Total: -15.29 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.22 Total: -36.68 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.46 Total: -9.21 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.52 -7.57 -36.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690147818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.938 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds